CmoCh09G006090 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh09G006090
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	DNA-directed RNA polymerase subunit beta''
Location	Cmo_Chr09: 3021990 .. 3027385 (-)
RNA-Seq Expression	CmoCh09G006090
Synteny	CmoCh09G006090

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TTCAGGCTTGGGTGGGCGCAATCACATTCTTCCAACATCCTCGCAAACAAAGCAGGCAATACCCAAAGCCGGCACGACAGCGCCACTCTGTATCTCTTATCCTACATGCTTCTCCGAGCGTCCCCTCTTCTTCGCGCCTCCCACCGTCCATTCTCCTCTGGGGTTCACATGGCGCTAGCTGCCCATCTCCCTGTCTCTCCCAACCGTCAAAGTTTCCATTCATGGCGATCTTCTTCGCACTTGCCGCCTGTTTGTCAAGCGAATGGCTACGACCGCATTTCGACCAAAATAACATTTCCACAATTTGTTCGGAGTTTCTACGTCTTGTCGGGAACATACAATAAGGTACAGAGGCCTTGTGGAAGGATTTTCTGTGGGCAAAGAGAGTATAGAAAGGTGAGGAGACGAGTCCCCAAAACCAAGAGAAAGGAATTAGAGCTCAACGTCAGTATCTGTATCGAAGAAAAGTTGCCGGACGACCCTGAACTTTTGGTATCCATTTCTTCACGTACATTTTACACTGTCCTTTTTTCGGTATTTTTTTGTTGTTGATTATACGTTCATAAAAGAATTTATTTCATGATGATGGTGGGAAGAGTAATAATGAGAGGGATCGAGAATGCTTGTTTTGGGCAATCCTGTTGCATTCTATGTTGTAATTGTGCATGATATCCTAGCATTCGTCTAGGAGTCTATAGGTTGAATTAATTTTCAATGACATTGTTCTCAATCTCCACCCTCCTTTTGTTTAGACTCAAGAAAACGAGCAGCACGTTACTAAGTGGACTTGCTACTTGACACATTCCTCTCTCTTATATTTAATTTTGGTATTGCAATAATCTAGGAATCATATTGTACTTTCTTTACGTTAAATGTAACAGCCTAAGCCACCGCTAGCAGATTTCGTCCTCTCTGGGCTTTCCCTCAAGATTTTTAAAACACGTATGCTAGGGAGAGGTTTTAGACACCGGGCGATGTGCCAGCGAGGATGTTGGACCACTAAGGAGGGTGGATTGTGAGATCTCACGTCGGTTGGAGAGGGGAATGAAACATTCTTTATAAGGGGGTGAAAACCTCTCCCTAACAGACGCGTTTTAAAAACCTTGAGGGGAAGCCCGAAAGGAAAAGCCCAAAGGGGACAATATCTGCTAGTGGTTTGGACGGTTAGAAAAGAAATCTTAGGGAAATGAGAGCGAAAAAAGCAGTTAAGCTATGAAATTCAGTTGTGTCATCAACTTCTCCCAACGGTTTTAGAACATAGCTTCTCCCAGCTGCTTAACGTGCAATGCACCAAATGCATCTAGACGACAATAATTTCATATGTGGATACGAATTTCTACTTCTTGATTACAAGTGCTTTGACGTTAGAATATTTGAGAGATTGATGCTTTAAGATATCAAAGTTGGATCGGTAGAATATGTCAAGAATTAGGAGTAAAATAAGTTTTTCATGTCTGATCTCTTCTGCATTGTTGCAAGGTTCGTTTTTTATTGATCATTTAATACTGATAGCTTTCCTTTTTTTGAATGCTTCAGAGTATTGCAGAAATGCTTCGTTTGAATGTTCCCAAGGCTCTGAAGTTAGCTTTCAACAATTTAAAGGATTCACAATACAAAACTCGAGATAGTTCAATAAACGATGTTGGTTTATTTGAAAGTGTTGAGATGTCCGTGCTACTTTGTAACGACGAGTTTATTTGTAAACTTAACAAAGAATGGAGGGACGAGGATCATGCCACTGATGTCCTGTCCATGTCACAGCATGTCCCAGAACTGAAGCTTCCAATTGTAAGAACTTGAGTAGAAGTGAGTACGGACTAATGTCTTTGAGAATGATAAATGATTGACTGATTTTTGTATCTTCAGCTTATGTTAGGTGATATTGTCATTTCTGTTGAGACTGCTGCGAGGCAGGCGGAGGAACGGGGACACACACTCCTTGATGAGATTCGGATACTCCTGGTTCGTCACTTGATCGCCCTTTTTGTTTTAAGATAGAAGCTAATAATTTTGTCCTTGCATCCGTATGTTTGAGAACTAGTAACATTGCTACTATTCACATAGCATACGTGCCTTTAGGGGAGCGTGTAAGACGAAGATGGCGTTTAGTATGCGGGCATGATGGGTCCATGGGATTTGGTTTCAAAATTAAAAGTTCTTGCACAATCTATACACAAACATTTTATTCCCAAGCTTCACATTCCCATGCAACACATAAAATAGGCCCAATATCACAATCATTAGCACATTTCTCACACTGCATCCTTCATTTTCAAGCATTTGAAACTCATTAATGTGTATTCTAAACTGGACCATGCAAAGCCTGCTAAACAAAGAACTTGACCTTCTTGGAAATTTTCGCCATCCACCTTGAGGAGAAATCACTAGGCTTTCAATTTTCAAATCCTGTTTTTTCAAGGCGATGGGAATTAAACTGTCCAAGGATTCATTTCCTAAAACTGGAAAGTTGAGTGATTTACTTATCCATTTTCTTTTGATTTAGGAATGCCAAAACTATGTGAAAGGAAAGAAAGGCAGTCGGTATAAAAGTATGCCCAAAATCTAGTTTAAAGAAAGGCAACCAAACTGAAACAACCATCTTTTTTCTTTTCTAGCCTCCTGAGAAATTTTTACTATCAAGAACTCAACTAAGCAAAGGAAATTCATCATTCCATGGGGTTTGTACAGGTGCACGGATTGTTGCATCTTTTGGGATTTGATCATGAGATTAGTGAAGAGGCTGAAGTAGAAATGGAAAAGGAGGAGGAACTACTTTTGAAGAGTTTAGAGTGGAAAGGGAAAGGGCTGATTCAGAGTGCAATTGATGCTGAAACTAATTCAAACTCAGTTGCAGAAGTTTCAGATGGTAATTATAGTAGTCTGCTTTATTGTTCTACTAATGACTGCACCAATGCACCAAAATTCCTTTGTGATTATAATTAAGCTGTGTTATGTTCTGTACATTTGTTACTGTTCTTATGTTGTAAGACCATGTTCTCTGTGTACGTTCTTACTATTCACATGTTAAAGACAGGAAAAAAGAAGGAAGTCTCCGATTCTACCGCCCAAGGTTCAGCTATATTTTCTGTGATATGGATGGTAAGAGCCCTCTTGAGGCGAATCCAAATTATTCCACGACCTGTGGTGTTGACTTGTATTAAGTATATGAATTATATGTAGGTACATTGCTCAACAGTAAAAGTCAAATTACTCCAACAACTGTCAAGGCCCTGAAGGAGGCCTTGTCAAGAGGTGTGAAAGTTGTTATAGCTACTGGAAAGGTATGACATTTTGCTTGATTGTTAGGATATTGACCTTAAGCTTGTTTTCCAACTGTTTTTCCATGTTCTGTTCTTAACTCTTCACTGAATGTCTGGGTGTTTTTGTAGTTTTTTTTCTTGTAACTTTCATCTGCTATTGCTTTATTTTCACAATTTAAGGAATAATGGTTAGATTTAATGCATGGACTAGGCCCGCCCAGCAGTAATAAGCATTTTGGAGAAGGCAGGTTTAGCTGGAAAAGATGGTGCCGTGTCTGAATTTTCTCCAGGAGTTTTCTTACAGGTTTCTATTTTTCCCTCCTCTTTTCTTTTTTATCTCTTTTTCGATTAGGAATCACGACTCTCCACAATAGTATGATATTGTCCACTTTGAGCATAAGCTCTCATGGCTTTGCTTTGGACTTCCCCAAAGGGTCTCATACCAATGAAGATGTATTTCTTACTTATAAACCCATGATCATCTTCTAAATTACCCAATGTGGGACTCCTTCCCAACAATCCTCAACAATCCTCCCCTCGAACAAAGTACACCATAGAGCCTCCCTTGAGGTCTATGTAGCCCTCGAACAGGCTCCCCTTAATCGAGACTTGACTCCTTTCTCTAGAGCCCTCGAACTAAGTACACCCTTTGTTCGACACATGAGTCACTTTTGATTACACTTGCAAGGTTCACAACTTCTTTGTTCGACATTTGAGGATTTTATAGACATGGCTAAATTAAGGGATGACTCTGATACCATATGTTAGGAATCACGACTTTCCACAATAGTATGATATTGTCCACTTTGAGTATAAGGTCTCATGGCTTTCCTTTGGGCTTCCCCAGAAGGCCTCATACCAATGAAGATGTATTCCTTACTTATAACCCATGATCATCCTCTAAATTAGCCAATGTGGGACTCCCTCCCAACAATCCTCAACATCTTCATGTTTCTTTCTAAAGTTGATGCATGGCTACTTTTGATTATATGTTAGGAATTTTCTTGAGGTGCTTTTATGTCTTGTAATGGTGATCTTTGTGTCATCAAGCGATGGAAGATCTGGATTATACGTTGGGAGACTGGCTTTAACTTTCAGTTTACTTTTATGTTTTCTCCAACTTTAATCTTATGCATTATATATTCTCTTTCCTTCCTTGGTGATAGGGACTACTTGTTTATGGTAGACAAGGCAAGGAAATTTATAGGCGGAACTTAGATCAAGATATCTGCAGAGAGGTACGTCTCGTGCTGTTTGCTGTACGTACTATTCAGCAGTTTCAATGACGATTAAGTAAATTTTTTTAAAGATGAGTCTTGGGGATTAAAGCCATGCGAGCACAAAACATTCTACAATAGATGTATCCATGTAGTTATGCTTGCCAAAGAAAATGACTCAGCTAGCTGCCCTCTCTTTTATGTACGGTTTGAAACTAAAAACCGTAAGAATCACCGAAAATAATGATAGTTTTATGAACGGTTAACTAACAAACCTAATAAAGGAAAAGGTTTTTTAACACAAGATGCTTGTTAATGATACCTAAATTTGTGTTTGTTGAAGTGCAGGCATGCCTTTATTCTTTAGAGAAGAATGTTCCTCTGATTGCATTTGGTGAAGGCCGTTGCTTAACTCTATTTGATCATCCACTTACTGATGCATTGCACACTATATACCATGAGCCCAAGGTACTTGAACATATCTTTGTCATGGTTCTAAGTCTTATATGTAGTAAATGTGATATTTGTACTTGTAAAGGTGGAGATTCGTGCGTGAACATACACTCTTAATTTAAAAGAGAGGGTCCGAAAACATATTTATTCTGACTTAGAGGGAGAAATGCATTAGAGTACTGATGTGTACCATGGACCCGAATTTACATATAGTAATGTCCATCTCTTACCAAAAACAAGTCATTTATGGATATTATCAGGAGGTTCGTGCGGATGCAGTATAGTCCCTTTTTCACTCTACAAGGATCAAGATCAAATTAACGTTCATTCTCTTTCTGTCGAAAGGAGATATATTTCTAGCTTTTCAGTAGATAATGATAAAGTGAGACAAAAATTTTATGGTCCGGATTTCTCTGGTAAAAACGAAAGCGGAATTCCTGATTATTCAGTTTACATGGCTAACTAC

mRNA sequence

TTCAGGCTTGGGTGGGCGCAATCACATTCTTCCAACATCCTCGCAAACAAAGCAGGCAATACCCAAAGCCGGCACGACAGCGCCACTCTGTATCTCTTATCCTACATGCTTCTCCGAGCGTCCCCTCTTCTTCGCGCCTCCCACCGTCCATTCTCCTCTGGGGTTCACATGGCGCTAGCTGCCCATCTCCCTGTCTCTCCCAACCGTCAAAGTTTCCATTCATGGCGATCTTCTTCGCACTTGCCGCCTGTTTGTCAAGCGAATGGCTACGACCGCATTTCGACCAAAATAACATTTCCACAATTTGTTCGGAGTTTCTACGTCTTGTCGGGAACATACAATAAGGTACAGAGGCCTTGTGGAAGGATTTTCTGTGGGCAAAGAGAGTATAGAAAGGTGAGGAGACGAGTCCCCAAAACCAAGAGAAAGGAATTAGAGCTCAACGTCAGTATCTGTATCGAAGAAAAGTTGCCGGACGACCCTGAACTTTTGAGTATTGCAGAAATGCTTCGTTTGAATGTTCCCAAGGCTCTGAAGTTAGCTTTCAACAATTTAAAGGATTCACAATACAAAACTCGAGATAGTTCAATAAACGATGTTGGTTTATTTGAAAGTGTTGAGATGTCCGTGCTACTTTGTAACGACGAGTTTATTTGTAAACTTAACAAAGAATGGAGGGACGAGGATCATGCCACTGATGTCCTGTCCATGTCACAGCATGTCCCAGAACTGAAGCTTCCAATTCTTATGTTAGGTGATATTGTCATTTCTGTTGAGACTGCTGCGAGGCAGGCGGAGGAACGGGGACACACACTCCTTGATGAGATTCGGATACTCCTGGTGCACGGATTGTTGCATCTTTTGGGATTTGATCATGAGATTAGTGAAGAGGCTGAAGTAGAAATGGAAAAGGAGGAGGAACTACTTTTGAAGAGTTTAGAGTGGAAAGGGAAAGGGCTGATTCAGAGTGCAATTGATGCTGAAACTAATTCAAACTCAGTTGCAGAAGTTTCAGATGGAAAAAAGAAGGAAGTCTCCGATTCTACCGCCCAAGGTTCAGCTATATTTTCTGTGATATGGATGGTAAGAGCCCTCTTGAGGCGAATCCAAATTATTCCACGACCTGTGGTGTTGACTTGTACATTGCTCAACAGTAAAAGTCAAATTACTCCAACAACTGTCAAGGCCCTGAAGGAGGCCTTGTCAAGAGGTGTGAAAGTTGTTATAGCTACTGGAAAGGCCCGCCCAGCAGTAATAAGCATTTTGGAGAAGGCAGGTTTAGCTGGAAAAGATGGTGCCGTGTCTGAATTTTCTCCAGGAGGACTACTTGTTTATGGTAGACAAGGCAAGGAAATTTATAGGCGGAACTTAGATCAAGATATCTGCAGAGAGGCATGCCTTTATTCTTTAGAGAAGAATGTTCCTCTGATTGCATTTGGTGAAGGCCGTTGCTTAACTCTATTTGATCATCCACTTACTGATGCATTGCACACTATATACCATGAGCCCAAGAGTACTGATGTGTACCATGGACCCGAATTTACATATAGTAATGTCCATCTCTTACCAAAAACAAGTCATTTATGGATATTATCAGGAGGTTCGTGCGGATGCAGTATAGTCCCTTTTTCACTCTACAAGGATCAAGATCAAATTAACGTTCATTCTCTTTCTGTCGAAAGGAGATATATTTCTAGCTTTTCAGTAGATAATGATAAAGTGAGACAAAAATTTTATGGTCCGGATTTCTCTGGTAAAAACGAAAGCGGAATTCCTGATTATTCAGTTTACATGGCTAACTAC

Coding sequence (CDS)

TTCAGGCTTGGGTGGGCGCAATCACATTCTTCCAACATCCTCGCAAACAAAGCAGGCAATACCCAAAGCCGGCACGACAGCGCCACTCTGTATCTCTTATCCTACATGCTTCTCCGAGCGTCCCCTCTTCTTCGCGCCTCCCACCGTCCATTCTCCTCTGGGGTTCACATGGCGCTAGCTGCCCATCTCCCTGTCTCTCCCAACCGTCAAAGTTTCCATTCATGGCGATCTTCTTCGCACTTGCCGCCTGTTTGTCAAGCGAATGGCTACGACCGCATTTCGACCAAAATAACATTTCCACAATTTGTTCGGAGTTTCTACGTCTTGTCGGGAACATACAATAAGGTACAGAGGCCTTGTGGAAGGATTTTCTGTGGGCAAAGAGAGTATAGAAAGGTGAGGAGACGAGTCCCCAAAACCAAGAGAAAGGAATTAGAGCTCAACGTCAGTATCTGTATCGAAGAAAAGTTGCCGGACGACCCTGAACTTTTGAGTATTGCAGAAATGCTTCGTTTGAATGTTCCCAAGGCTCTGAAGTTAGCTTTCAACAATTTAAAGGATTCACAATACAAAACTCGAGATAGTTCAATAAACGATGTTGGTTTATTTGAAAGTGTTGAGATGTCCGTGCTACTTTGTAACGACGAGTTTATTTGTAAACTTAACAAAGAATGGAGGGACGAGGATCATGCCACTGATGTCCTGTCCATGTCACAGCATGTCCCAGAACTGAAGCTTCCAATTCTTATGTTAGGTGATATTGTCATTTCTGTTGAGACTGCTGCGAGGCAGGCGGAGGAACGGGGACACACACTCCTTGATGAGATTCGGATACTCCTGGTGCACGGATTGTTGCATCTTTTGGGATTTGATCATGAGATTAGTGAAGAGGCTGAAGTAGAAATGGAAAAGGAGGAGGAACTACTTTTGAAGAGTTTAGAGTGGAAAGGGAAAGGGCTGATTCAGAGTGCAATTGATGCTGAAACTAATTCAAACTCAGTTGCAGAAGTTTCAGATGGAAAAAAGAAGGAAGTCTCCGATTCTACCGCCCAAGGTTCAGCTATATTTTCTGTGATATGGATGGTAAGAGCCCTCTTGAGGCGAATCCAAATTATTCCACGACCTGTGGTGTTGACTTGTACATTGCTCAACAGTAAAAGTCAAATTACTCCAACAACTGTCAAGGCCCTGAAGGAGGCCTTGTCAAGAGGTGTGAAAGTTGTTATAGCTACTGGAAAGGCCCGCCCAGCAGTAATAAGCATTTTGGAGAAGGCAGGTTTAGCTGGAAAAGATGGTGCCGTGTCTGAATTTTCTCCAGGAGGACTACTTGTTTATGGTAGACAAGGCAAGGAAATTTATAGGCGGAACTTAGATCAAGATATCTGCAGAGAGGCATGCCTTTATTCTTTAGAGAAGAATGTTCCTCTGATTGCATTTGGTGAAGGCCGTTGCTTAACTCTATTTGATCATCCACTTACTGATGCATTGCACACTATATACCATGAGCCCAAGAGTACTGATGTGTACCATGGACCCGAATTTACATATAGTAATGTCCATCTCTTACCAAAAACAAGTCATTTATGGATATTATCAGGAGGTTCGTGCGGATGCAGTATAGTCCCTTTTTCACTCTACAAGGATCAAGATCAAATTAACGTTCATTCTCTTTCTGTCGAAAGGAGATATATTTCTAGCTTTTCAGTAGATAATGATAAAGTGAGACAAAAATTTTATGGTCCGGATTTCTCTGGTAAAAACGAAAGCGGAATTCCTGATTATTCAGTTTACATGGCTAACTAC

Protein sequence

FRLGWAQSHSSNILANKAGNTQSRHDSATLYLLSYMLLRASPLLRASHRPFSSGVHMALAAHLPVSPNRQSFHSWRSSSHLPPVCQANGYDRISTKITFPQFVRSFYVLSGTYNKVQRPCGRIFCGQREYRKVRRRVPKTKRKELELNVSICIEEKLPDDPELLSIAEMLRLNVPKALKLAFNNLKDSQYKTRDSSINDVGLFESVEMSVLLCNDEFICKLNKEWRDEDHATDVLSMSQHVPELKLPILMLGDIVISVETAARQAEERGHTLLDEIRILLVHGLLHLLGFDHEISEEAEVEMEKEEELLLKSLEWKGKGLIQSAIDAETNSNSVAEVSDGKKKEVSDSTAQGSAIFSVIWMVRALLRRIQIIPRPVVLTCTLLNSKSQITPTTVKALKEALSRGVKVVIATGKARPAVISILEKAGLAGKDGAVSEFSPGGLLVYGRQGKEIYRRNLDQDICREACLYSLEKNVPLIAFGEGRCLTLFDHPLTDALHTIYHEPKSTDVYHGPEFTYSNVHLLPKTSHLWILSGGSCGCSIVPFSLYKDQDQINVHSLSVERRYISSFSVDNDKVRQKFYGPDFSGKNESGIPDYSVYMANY

Homology

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BLAST of CmoCh09G006090 vs. ExPASy Swiss-Prot
Match: Q8L5Z4 (Endoribonuclease YBEY, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=YBEY PE=1 SV=1)

HSP 1 Score: 510.4 bits (1313), Expect = 2.8e-143
Identity = 286/477 (59.96%), Postives = 343/477 (71.91%), Query Frame = 0


Query: 36  MLLRASPLLRASHRPFSSGVHMALAAHLPVSPNRQSFHSWRSSSHLPPVCQANGYDRIST 95
           ML R  P LR +    +    M  A  L + PN   FHS       P     N  D  S+
Sbjct: 1   MLSRVCPTLRYNRIWSAHAREMPRATLLLLQPN--FFHS------SPKTALVNRLDVTSS 60

Query: 96  KITFPQFVRSFYVLS---GTYNKVQRPCGRIFCGQREYRKVRRRVPKTKRKELELNVSIC 155
           + +   F RSF+ L    G + K+ +P G++F  +REYRK+RRR PK K++ELEL+VSIC
Sbjct: 61  EFS-SMFRRSFHALRSTVGDWRKLPKPPGQVFAERREYRKIRRRAPK-KKQELELSVSIC 120

Query: 156 IEEKLPDDPELLSIAEMLRLNVPKALKLAFNNLKDSQYKTRDSSINDVGLFESVEMSVLL 215
           IEE+LPDD E+ +IAEMLRLNVP A+ LAFN LKDS+YKTR++ I D+G +E+VE+SV+L
Sbjct: 121 IEEQLPDDLEIQNIAEMLRLNVPMAMTLAFNGLKDSKYKTRETDIEDLGGYETVELSVML 180

Query: 216 CNDEFICKLNKEWRDEDHATDVLSMSQHVPELKLPILMLGDIVISVETAARQAEERGHTL 275
           CND+FICKLNKEWR EDHATDVLSMSQHVPELKLP+LM+GD+VISVETAARQA ERGHTL
Sbjct: 181 CNDDFICKLNKEWRGEDHATDVLSMSQHVPELKLPVLMMGDLVISVETAARQAAERGHTL 240

Query: 276 LDEIRILLVHGLLHLLGFDHEISEEAEVEMEKEEELLLKSLEWKGKGLIQSAIDAETNSN 335
           LDEIRIL++HGLLHLLGFDHEIS+EAE EME+EEELLLK+L WKGKGLIQSA D +  + 
Sbjct: 241 LDEIRILVIHGLLHLLGFDHEISDEAEQEMEEEEELLLKNLGWKGKGLIQSAYDIQKTTT 300

Query: 336 SVAEVSDGKKKEVSDSTAQGSAIFSVIWMVRALLRRIQIIPRPVVLTCTLLNSKSQITPT 395
              E SD +K+   D        FS I+                 +  TLLNSKSQI+  
Sbjct: 301 VQPEKSDDRKE--GDGLRLYKPKFSYIF---------------CDMDGTLLNSKSQISEA 360

Query: 396 TVKALKEALSRGVKVVIATGKARPAVISILEKAGLAGKDGAVSEFSPG----GLLVYGRQ 455
             KALKEAL RG+KVVIATGK+RP  I IL+ A L G DG +SE SPG    GLLVYGRQ
Sbjct: 361 NAKALKEALLRGLKVVIATGKSRPGAIRILKTADLTGSDGIISESSPGVFVQGLLVYGRQ 420

Query: 456 GKEIYRRNLDQDICREACLYSLEKNVPLIAFGEGRCLTLFDHPLTDALHTIYHEPKS 506
           GKE+YR NLD+D+CRE CLYSLE  +PLIAF + RCLTLFDHPL D+LHTIY+EPK+
Sbjct: 421 GKEVYRGNLDRDVCRETCLYSLEHRIPLIAFSQDRCLTLFDHPLVDSLHTIYNEPKA 450

[Close]

BLAST of CmoCh09G006090 vs. ExPASy Swiss-Prot
Match: Q4VZP3 (DNA-directed RNA polymerase subunit beta'' OS=Cucumis sativus OX=3659 GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 8.7e-44
Identity = 83/91 (91.21%), Postives = 86/91 (94.51%), Query Frame = 0


Query: 505 STDVYHGPEFTYSNVHLLPKTSHLWILSGGSCGCSIVPFSLYKDQDQINVHSLSVERRYI 564
           STDVYH PEFTYSNVHLLPKTSHLWILSGGSCGCS+VPFSLYKDQDQINVHSL VERRYI
Sbjct: 455 STDVYHAPEFTYSNVHLLPKTSHLWILSGGSCGCSLVPFSLYKDQDQINVHSLCVERRYI 514

Query: 565 SSFSVDNDKVRQKFYGPDFSGKNESGIPDYS 596
           SS SV+NDKV QKFYGPD SGKNE+GIPDYS
Sbjct: 515 SSLSVNNDKVGQKFYGPDLSGKNENGIPDYS 545

[Close]

BLAST of CmoCh09G006090 vs. ExPASy Swiss-Prot
Match: B1NWE0 (DNA-directed RNA polymerase subunit beta'' OS=Manihot esculenta OX=3983 GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 1.2e-37
Identity = 75/91 (82.42%), Postives = 82/91 (90.11%), Query Frame = 0


Query: 505 STDVYHGPEFTYSNVHLLPKTSHLWILSGGSCGCSIVPFSLYKDQDQINVHSLSVERRYI 564
           STDVYH PEFTYSNVHLLPKTSHLWILSG SC  SIVPFSL+KDQDQ+NVHSLSV+RRYI
Sbjct: 455 STDVYHAPEFTYSNVHLLPKTSHLWILSGSSCRSSIVPFSLHKDQDQMNVHSLSVKRRYI 514

Query: 565 SSFSVDNDKVRQKFYGPDFSGKNESGIPDYS 596
           SS SV+ND+V+ KF+  DFSGK ESGIPDYS
Sbjct: 515 SSPSVNNDQVKHKFFSSDFSGKKESGIPDYS 545

[Close]

BLAST of CmoCh09G006090 vs. ExPASy Swiss-Prot
Match: A4QJA5 (DNA-directed RNA polymerase subunit beta'' OS=Aethionema cordifolium OX=434059 GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 9.0e-33
Identity = 65/91 (71.43%), Postives = 78/91 (85.71%), Query Frame = 0


Query: 505 STDVYHGPEFTYSNVHLLPKTSHLWILSGGSCGCSIVPFSLYKDQDQINVHSLSVERRYI 564
           STDVYH PEFTYSNVHL+PKTSHLWILSGGSCG S++ FS++KDQDQ+N+  LSV+R+ I
Sbjct: 453 STDVYHAPEFTYSNVHLVPKTSHLWILSGGSCGASLILFSIHKDQDQMNIPFLSVKRKSI 512

Query: 565 SSFSVDNDKVRQKFYGPDFSGKNESGIPDYS 596
            S SV+ND+V QKF+  DFS K +SGIPDYS
Sbjct: 513 CSLSVNNDQVSQKFFSSDFSDKKKSGIPDYS 543

[Close]

BLAST of CmoCh09G006090 vs. ExPASy Swiss-Prot
Match: B1A925 (DNA-directed RNA polymerase subunit beta'' OS=Carica papaya OX=3649 GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 1.5e-32
Identity = 66/93 (70.97%), Postives = 78/93 (83.87%), Query Frame = 0


Query: 505 STDVYHGPEFTYSNVHLLPKTSHLWILSGGSCGCSIVPFSLYKDQDQINVHSLSVERRYI 564
           STDVYH PEFTYSNVHLLPKTSHLWILSGGS   S+VPFSL+KDQDQ+N+HSLSVE+  I
Sbjct: 451 STDVYHAPEFTYSNVHLLPKTSHLWILSGGSSRSSLVPFSLHKDQDQMNIHSLSVEQESI 510

Query: 565 SSFSVDNDKVRQKFYGPDFSGKNESGIPDYSVY 598
           SS +V+ND+ R KF+  +FS K + GIPDYS +
Sbjct: 511 SSLAVNNDQGRHKFFSSNFSDKKKCGIPDYSEF 543

[Close]

BLAST of CmoCh09G006090 vs. ExPASy TrEMBL
Match: A0A6J1FDM0 (endoribonuclease YBEY, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111443143 PE=3 SV=1)

HSP 1 Score: 827.0 bits (2135), Expect = 5.0e-236
Identity = 437/478 (91.42%), Postives = 440/478 (92.05%), Query Frame = 0


Query: 36  MLLRASPLLRASHRPFSSGVHMALAAHLPVSPNRQSFHSWRSSSHLPPVCQANGYDRIST 95
           MLLRASPLLRASHRPFSSGVHMALAAHLPVSPNRQSFHSWRSSSHLPPVCQANGYDRIST
Sbjct: 1   MLLRASPLLRASHRPFSSGVHMALAAHLPVSPNRQSFHSWRSSSHLPPVCQANGYDRIST 60

Query: 96  KITFPQFVRSFYVLSGTYNKVQRPCGRIFCGQREYRKVRRRVPKTKRKELELNVSICIEE 155
           KITFPQFVRSFYVLSGTYNKVQRPCGRIFCGQREYRKVRRRVPKTKRKELELNVSICIEE
Sbjct: 61  KITFPQFVRSFYVLSGTYNKVQRPCGRIFCGQREYRKVRRRVPKTKRKELELNVSICIEE 120

Query: 156 KLPDDPELLSIAEMLRLNVPKALKLAFNNLKDSQYKTRDSSINDVGLFESVEMSVLLCND 215
           KLPDDPELLSIAEMLRLNVPKALKLAFNNLKDSQYKTRDSSINDVGLFESVEMSVLLCND
Sbjct: 121 KLPDDPELLSIAEMLRLNVPKALKLAFNNLKDSQYKTRDSSINDVGLFESVEMSVLLCND 180

Query: 216 EFICKLNKEWRDEDHATDVLSMSQHVPELKLPILMLGDIVISVETAARQAEERGHTLLDE 275
           EFICKLNKEWRDEDHATDVLSMSQHVPELKLPILMLGDIVISVETAARQAEERGHTLLDE
Sbjct: 181 EFICKLNKEWRDEDHATDVLSMSQHVPELKLPILMLGDIVISVETAARQAEERGHTLLDE 240

Query: 276 IRILLVHGLLHLLGFDHEISEEAEVEMEKEEELLLKSLEWKGKGLIQSAIDAETNSNSVA 335
           IRILLVHGLLHLLGFDHEISEEAEVEMEKEEELLLKSLEWKGKGLIQSAIDAETNSNSVA
Sbjct: 241 IRILLVHGLLHLLGFDHEISEEAEVEMEKEEELLLKSLEWKGKGLIQSAIDAETNSNSVA 300

Query: 336 EVSDGKKKEVSDSTAQGSAIFSVIWMVRALLRRIQIIPRPVVLTC----TLLNSKSQITP 395
           EVSD +KKE       GS  F                PR   + C    TLLNSKSQITP
Sbjct: 301 EVSDDRKKE-------GSLRF--------------YRPRFSYIFCDMDGTLLNSKSQITP 360

Query: 396 TTVKALKEALSRGVKVVIATGKARPAVISILEKAGLAGKDGAVSEFSPG----GLLVYGR 455
           TTVKALKEALSRGVKVVIATGKARPAVISILEKAGLAGKDGAVSEFSPG    GLLVYGR
Sbjct: 361 TTVKALKEALSRGVKVVIATGKARPAVISILEKAGLAGKDGAVSEFSPGVFLQGLLVYGR 420

Query: 456 QGKEIYRRNLDQDICREACLYSLEKNVPLIAFGEGRCLTLFDHPLTDALHTIYHEPKS 506
           QGKEIYRRNLDQDICREACLYSLEKNVPLIAFGEGRCLTLFDHPLTDALHTIYHEPK+
Sbjct: 421 QGKEIYRRNLDQDICREACLYSLEKNVPLIAFGEGRCLTLFDHPLTDALHTIYHEPKA 457

[Close]

BLAST of CmoCh09G006090 vs. ExPASy TrEMBL
Match: A0A6J1IL90 (endoribonuclease YBEY, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111475505 PE=3 SV=1)

HSP 1 Score: 800.8 bits (2067), Expect = 3.9e-228
Identity = 427/478 (89.33%), Postives = 432/478 (90.38%), Query Frame = 0


Query: 36  MLLRASPLLRASHRPFSSGVHMALAAHLPVSPNRQSFHSWRSSSHLPPVCQANGYDRIST 95
           MLLRASPLLRASHRPFSSGVHMALAAH  V PN QSF SWRSSSHLPPVCQANGYDRIS 
Sbjct: 1   MLLRASPLLRASHRPFSSGVHMALAAH--VLPNHQSFPSWRSSSHLPPVCQANGYDRISP 60

Query: 96  KITFPQFVRSFYVLSGTYNKVQRPCGRIFCGQREYRKVRRRVPKTKRKELELNVSICIEE 155
           K+TF QFVRSFYVLSGTYNKVQRPCGRIFCGQREYRKVRRRVPKTK+KELELNVSICIEE
Sbjct: 61  KLTFSQFVRSFYVLSGTYNKVQRPCGRIFCGQREYRKVRRRVPKTKKKELELNVSICIEE 120

Query: 156 KLPDDPELLSIAEMLRLNVPKALKLAFNNLKDSQYKTRDSSINDVGLFESVEMSVLLCND 215
           KLPDDPELLSIAEMLRLNVPKALKLAFNNLKDSQYKTRDSSINDVGLFESVEMSVLLCND
Sbjct: 121 KLPDDPELLSIAEMLRLNVPKALKLAFNNLKDSQYKTRDSSINDVGLFESVEMSVLLCND 180

Query: 216 EFICKLNKEWRDEDHATDVLSMSQHVPELKLPILMLGDIVISVETAARQAEERGHTLLDE 275
           EFICKLNKEWRDEDHATDVLSMSQHVPELKLPILMLGDIVISVETAARQAEERGHTLLDE
Sbjct: 181 EFICKLNKEWRDEDHATDVLSMSQHVPELKLPILMLGDIVISVETAARQAEERGHTLLDE 240

Query: 276 IRILLVHGLLHLLGFDHEISEEAEVEMEKEEELLLKSLEWKGKGLIQSAIDAETNSNSVA 335
           IRILLVHGLLHLLGFDHEISEEAEVEMEKEEELLLKSLEWKGKGLIQSAIDAETNSNSVA
Sbjct: 241 IRILLVHGLLHLLGFDHEISEEAEVEMEKEEELLLKSLEWKGKGLIQSAIDAETNSNSVA 300

Query: 336 EVSDGKKKEVSDSTAQGSAIFSVIWMVRALLRRIQIIPRPVVLTC----TLLNSKSQITP 395
           EVSD +KKE       GS  F                PR   + C    TLLNSKSQITP
Sbjct: 301 EVSDDRKKE-------GSLRF--------------YRPRFSYIFCDMDGTLLNSKSQITP 360

Query: 396 TTVKALKEALSRGVKVVIATGKARPAVISILEKAGLAGKDGAVSEFSPG----GLLVYGR 455
           TTVKALKEALSRGVKVVIATGKARPAVISILEKAGLAGKDG VSEFSPG    GLLVYGR
Sbjct: 361 TTVKALKEALSRGVKVVIATGKARPAVISILEKAGLAGKDGVVSEFSPGVFLQGLLVYGR 420

Query: 456 QGKEIYRRNLDQDICREACLYSLEKNVPLIAFGEGRCLTLFDHPLTDALHTIYHEPKS 506
           QGKEIYRRNLDQDICREACLYSLEKNVPLIAFGEGRCLTLFDHPLTDALHTIYHEPK+
Sbjct: 421 QGKEIYRRNLDQDICREACLYSLEKNVPLIAFGEGRCLTLFDHPLTDALHTIYHEPKA 455

[Close]

BLAST of CmoCh09G006090 vs. ExPASy TrEMBL
Match: A0A0A0LJV1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G895080 PE=3 SV=1)

HSP 1 Score: 734.9 bits (1896), Expect = 2.6e-208
Identity = 390/478 (81.59%), Postives = 414/478 (86.61%), Query Frame = 0


Query: 36  MLLRASPLLRASHRPFSSGVHMALAAHLPVSPNRQSFHSWRSSSHLPPVCQANGYDRIST 95
           MLLRASPLLRASH PF SG+HMALA HLP+ PN ++  S RSSSHL  VCQ N YDRIS 
Sbjct: 1   MLLRASPLLRASHLPFLSGIHMALALHLPLYPNYKTSTSSRSSSHLVSVCQTNCYDRISG 60

Query: 96  KITFPQFVRSFYVLSGTYNKVQRPCGRIFCGQREYRKVRRRVPKTKRKELELNVSICIEE 155
           KI F QFVR+FY LSG+YNKV+ PCGRIFCGQREYRKVRRRVPK K KELELNVSICIEE
Sbjct: 61  KINFSQFVRNFYALSGSYNKVRAPCGRIFCGQREYRKVRRRVPKRKIKELELNVSICIEE 120

Query: 156 KLPDDPELLSIAEMLRLNVPKALKLAFNNLKDSQYKTRDSSINDVGLFESVEMSVLLCND 215
           +LPDDPE+LSIAEMLRLNVPKALK A NNLKDS+YKTRD+SI+DVGLF+SVE+SVLLCND
Sbjct: 121 ELPDDPEVLSIAEMLRLNVPKALKFALNNLKDSEYKTRDNSIDDVGLFDSVELSVLLCND 180

Query: 216 EFICKLNKEWRDEDHATDVLSMSQHVPELKLPILMLGDIVISVETAARQAEERGHTLLDE 275
           +FICKLNKEWRDEDHATDVLSMSQHVPELKLPILMLGDIVISVETAARQAEERGHTLLDE
Sbjct: 181 DFICKLNKEWRDEDHATDVLSMSQHVPELKLPILMLGDIVISVETAARQAEERGHTLLDE 240

Query: 276 IRILLVHGLLHLLGFDHEISEEAEVEMEKEEELLLKSLEWKGKGLIQSAIDAETNSNSVA 335
           IRILLVHGLLHLLGFDHEISEEAEVEMEKEEELLL SLEW+GKGLIQSAIDA+TNS+S A
Sbjct: 241 IRILLVHGLLHLLGFDHEISEEAEVEMEKEEELLLTSLEWRGKGLIQSAIDAQTNSDSAA 300

Query: 336 EVSDGKKKEVSDSTAQGSAIFSVIWMVRALLRRIQIIPRPVVLTC----TLLNSKSQITP 395
            VSD +KKE       GS  F                PR   + C    TLLNSKSQITP
Sbjct: 301 VVSDDRKKE-------GSLRF--------------YRPRFSYIFCDMDGTLLNSKSQITP 360

Query: 396 TTVKALKEALSRGVKVVIATGKARPAVISILEKAGLAGKDGAVSEFSPG----GLLVYGR 455
           TTVKALKE LSRGVKVVIATGKARPAVISILEKAGLAGKDGAVSEFSPG    GLLVYGR
Sbjct: 361 TTVKALKEVLSRGVKVVIATGKARPAVISILEKAGLAGKDGAVSEFSPGVFLQGLLVYGR 420

Query: 456 QGKEIYRRNLDQDICREACLYSLEKNVPLIAFGEGRCLTLFDHPLTDALHTIYHEPKS 506
           QGKEIYRRNLDQD+C+EACLYSLEK VPLIAFGEGRCLTLFDHPLTDALHT+YHEPK+
Sbjct: 421 QGKEIYRRNLDQDVCKEACLYSLEKKVPLIAFGEGRCLTLFDHPLTDALHTVYHEPKA 457

[Close]

BLAST of CmoCh09G006090 vs. ExPASy TrEMBL
Match: A0A1S3CQE9 (uncharacterized protein LOC103503611 OS=Cucumis melo OX=3656 GN=LOC103503611 PE=3 SV=1)

HSP 1 Score: 733.4 bits (1892), Expect = 7.6e-208
Identity = 392/479 (81.84%), Postives = 412/479 (86.01%), Query Frame = 0


Query: 36  MLLRASPLLRASHRPFSSGVHMALAAHLPVSPNRQSFHSWR-SSSHLPPVCQANGYDRIS 95
           MLLRASPLLRASH PF SG+HMALA HLP+ PN ++  SWR SSSHL  VCQ NGYDRIS
Sbjct: 1   MLLRASPLLRASHLPFPSGIHMALALHLPLYPNCKTSTSWRSSSSHLVSVCQTNGYDRIS 60

Query: 96  TKITFPQFVRSFYVLSGTYNKVQRPCGRIFCGQREYRKVRRRVPKTKRKELELNVSICIE 155
            KI F QFVR+FY LSG+YNKVQ PCGRIFCGQREYRKVRRRVPK K KELELNVSICIE
Sbjct: 61  AKINFSQFVRNFYALSGSYNKVQAPCGRIFCGQREYRKVRRRVPKRKIKELELNVSICIE 120

Query: 156 EKLPDDPELLSIAEMLRLNVPKALKLAFNNLKDSQYKTRDSSINDVGLFESVEMSVLLCN 215
           E+LPDDPE+LSIAEMLRLNVPKALK A NNLKDS+YKTR SSI+DVGLF+SVE+SVLLCN
Sbjct: 121 EELPDDPEILSIAEMLRLNVPKALKFALNNLKDSEYKTRYSSIDDVGLFDSVELSVLLCN 180

Query: 216 DEFICKLNKEWRDEDHATDVLSMSQHVPELKLPILMLGDIVISVETAARQAEERGHTLLD 275
           D+FI KLNKEWRDEDHATDVLSMSQHVPELKLPILMLGDIVISVETAARQAEERGHTLLD
Sbjct: 181 DDFIRKLNKEWRDEDHATDVLSMSQHVPELKLPILMLGDIVISVETAARQAEERGHTLLD 240

Query: 276 EIRILLVHGLLHLLGFDHEISEEAEVEMEKEEELLLKSLEWKGKGLIQSAIDAETNSNSV 335
           EIRILLVHGLLHLLGFDHEISEEAE EMEKEEELLLKSLEW+GKGLIQSAIDAETNSNS 
Sbjct: 241 EIRILLVHGLLHLLGFDHEISEEAEEEMEKEEELLLKSLEWRGKGLIQSAIDAETNSNSA 300

Query: 336 AEVSDGKKKEVSDSTAQGSAIFSVIWMVRALLRRIQIIPRPVVLTC----TLLNSKSQIT 395
           A VSD +KKE       GS  F                PR   + C    TLLNSKSQIT
Sbjct: 301 AVVSDDRKKE-------GSLRF--------------YRPRFSYIFCDMDGTLLNSKSQIT 360

Query: 396 PTTVKALKEALSRGVKVVIATGKARPAVISILEKAGLAGKDGAVSEFSPG----GLLVYG 455
           PTTV+ALKE LSRGVKVVIATGKARPAVISILEKAGLAGKDGAVSEFSPG    GLLVYG
Sbjct: 361 PTTVRALKEVLSRGVKVVIATGKARPAVISILEKAGLAGKDGAVSEFSPGVFLQGLLVYG 420

Query: 456 RQGKEIYRRNLDQDICREACLYSLEKNVPLIAFGEGRCLTLFDHPLTDALHTIYHEPKS 506
           RQGKEIYRRNLDQD+CR ACLYSLEK VPLIAFGEGRCLTLFDHPL DALHT+YHEPK+
Sbjct: 421 RQGKEIYRRNLDQDVCRGACLYSLEKKVPLIAFGEGRCLTLFDHPLADALHTVYHEPKA 458

[Close]

BLAST of CmoCh09G006090 vs. ExPASy TrEMBL
Match: A0A6J1CCA3 (uncharacterized protein LOC111009890 OS=Momordica charantia OX=3673 GN=LOC111009890 PE=3 SV=1)

HSP 1 Score: 711.4 bits (1835), Expect = 3.1e-201
Identity = 385/478 (80.54%), Postives = 403/478 (84.31%), Query Frame = 0


Query: 36  MLLRASPLLRASHRPFSSGVHMALAAHLPVSPNRQSFHSWRSSSHLPPVCQANGYDRIST 95
           MLLRASPLLR SH P SSG+ MALAA+LP  P  QS  SWRSSSHL  V Q NGYDRIS 
Sbjct: 1   MLLRASPLLRGSHLPLSSGIQMALAAYLPFYPISQSSSSWRSSSHLAFVFQPNGYDRISA 60

Query: 96  KITFPQFVRSFYVLSGTYNKVQRPCGRIFCGQREYRKVRRRVPKTKRKELELNVSICIEE 155
           K +F  FVRSF VLSG Y+ V RPC RIFCGQREYRKVRRR PK+K KELELNV ICIEE
Sbjct: 61  KKSFSLFVRSFNVLSGVYSNVPRPCXRIFCGQREYRKVRRR-PKSKNKELELNVGICIEE 120

Query: 156 KLPDDPELLSIAEMLRLNVPKALKLAFNNLKDSQYKTRDSSINDVGLFESVEMSVLLCND 215
           +LPDDPE+LSIAE+LRLNVPKALKLAFNNLKDS+YKTRDSSINDVGLF+SVE+SVLLCND
Sbjct: 121 ELPDDPEILSIAELLRLNVPKALKLAFNNLKDSEYKTRDSSINDVGLFDSVELSVLLCND 180

Query: 216 EFICKLNKEWRDEDHATDVLSMSQHVPELKLPILMLGDIVISVETAARQAEERGHTLLDE 275
           EFI KLNKEWRDEDHATDVLSMSQHVPELKLPILMLGDIVIS+ETAARQAEERGHTLLDE
Sbjct: 181 EFIRKLNKEWRDEDHATDVLSMSQHVPELKLPILMLGDIVISLETAARQAEERGHTLLDE 240

Query: 276 IRILLVHGLLHLLGFDHEISEEAEVEMEKEEELLLKSLEWKGKGLIQSAIDAETNSNSVA 335
           IRILLVHGLLHLLGFDHEISEEAE EMEKEEELLLKSLEWKGKGLIQSAIDAETN NSVA
Sbjct: 241 IRILLVHGLLHLLGFDHEISEEAEAEMEKEEELLLKSLEWKGKGLIQSAIDAETNLNSVA 300

Query: 336 EVSDGKKKEVSDSTAQGSAIFSVIWMVRALLRRIQIIPRPVVLTC----TLLNSKSQITP 395
           EVSD +KKE       GS  F                PR   + C    TLLNSKSQITP
Sbjct: 301 EVSDDRKKE-------GSLRF--------------YRPRFSYIFCDMDGTLLNSKSQITP 360

Query: 396 TTVKALKEALSRGVKVVIATGKARPAVISILEKAGLAGKDGAVSEFSPG----GLLVYGR 455
           TT  ALKE LSRGVKVVIATGKAR A ISILEKAGLAGKDGAVSEFSPG    GLLVYGR
Sbjct: 361 TTANALKEVLSRGVKVVIATGKARQAAISILEKAGLAGKDGAVSEFSPGVFLQGLLVYGR 420

Query: 456 QGKEIYRRNLDQDICREACLYSLEKNVPLIAFGEGRCLTLFDHPLTDALHTIYHEPKS 506
           QGKEIYR NLDQD+CREACLYS+EK VPLIAFG GRCLTLFDHPLTD+LHTIYHEPK+
Sbjct: 421 QGKEIYRHNLDQDVCREACLYSVEKKVPLIAFGGGRCLTLFDHPLTDSLHTIYHEPKA 456

[Close]

BLAST of CmoCh09G006090 vs. NCBI nr
Match: KAG6591726.1 (Endoribonuclease YBEY, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 885.2 bits (2286), Expect = 3.2e-253
Identity = 466/512 (91.02%), Postives = 472/512 (92.19%), Query Frame = 0


Query: 2   RLGWAQSHSSNILANKAGNTQSRHDSATLYLLSYMLLRASPLLRASHRPFSSGVHMALAA 61
           +LGWAQSHSSNILANKAGNTQSRHDSATLYLLSYMLLRASPLLRASHRPFSSGVHMALAA
Sbjct: 352 KLGWAQSHSSNILANKAGNTQSRHDSATLYLLSYMLLRASPLLRASHRPFSSGVHMALAA 411

Query: 62  HLPVSPNRQSFHSWRSSSHLPPVCQANGYDRISTKITFPQFVRSFYVLSGTYNKVQRPCG 121
           HLPVSPNRQSFHSWRSSSHLPPVCQANGYDRIS K+TF QFVRSFYVLSGTYNKVQRPCG
Sbjct: 412 HLPVSPNRQSFHSWRSSSHLPPVCQANGYDRISPKLTFSQFVRSFYVLSGTYNKVQRPCG 471

Query: 122 RIFCGQREYRKVRRRVPKTKRKELELNVSICIEEKLPDDPELLSIAEMLRLNVPKALKLA 181
           RIFCGQREYRKVRRRVPKTK+KELELNVSICIEEKLPDDPELLSIAEMLRLNVPKALKLA
Sbjct: 472 RIFCGQREYRKVRRRVPKTKKKELELNVSICIEEKLPDDPELLSIAEMLRLNVPKALKLA 531

Query: 182 FNNLKDSQYKTRDSSINDVGLFESVEMSVLLCNDEFICKLNKEWRDEDHATDVLSMSQHV 241
           FNNLKDSQYKTRDSSINDVGLFESVEMSVLLCNDEFICKLNKEWRDEDHATDVLSMSQHV
Sbjct: 532 FNNLKDSQYKTRDSSINDVGLFESVEMSVLLCNDEFICKLNKEWRDEDHATDVLSMSQHV 591

Query: 242 PELKLPILMLGDIVISVETAARQAEERGHTLLDEIRILLVHGLLHLLGFDHEISEEAEVE 301
           PELKLPILMLGDIVISVETAARQAEERGHTLLDEIRILLVHGLLHLLGFDHEISEEAEVE
Sbjct: 592 PELKLPILMLGDIVISVETAARQAEERGHTLLDEIRILLVHGLLHLLGFDHEISEEAEVE 651

Query: 302 MEKEEELLLKSLEWKGKGLIQSAIDAETNSNSVAEVSDGKKKEVSDSTAQGSAIFSVIWM 361
           MEKEEELLLKSLEWKGKGLIQSAIDAETNSNSVAEVSD +KKE       GS  F     
Sbjct: 652 MEKEEELLLKSLEWKGKGLIQSAIDAETNSNSVAEVSDDRKKE-------GSLRF----- 711

Query: 362 VRALLRRIQIIPRPVVLTC----TLLNSKSQITPTTVKALKEALSRGVKVVIATGKARPA 421
                      PR   + C    TLLNSKSQITPTTVKALKEALSRGVKVVIATGKARPA
Sbjct: 712 ---------YRPRFSYIFCDMDGTLLNSKSQITPTTVKALKEALSRGVKVVIATGKARPA 771

Query: 422 VISILEKAGLAGKDGAVSEFSPG----GLLVYGRQGKEIYRRNLDQDICREACLYSLEKN 481
           VISILEKAGLAGKDGAVSEFSPG    GLLVYGRQGKEIYRRNLDQDICREACLYSLEKN
Sbjct: 772 VISILEKAGLAGKDGAVSEFSPGVFLQGLLVYGRQGKEIYRRNLDQDICREACLYSLEKN 831

Query: 482 VPLIAFGEGRCLTLFDHPLTDALHTIYHEPKS 506
           VPLIAFGEGRCLTLFDHPLTDALHTIYHEPK+
Sbjct: 832 VPLIAFGEGRCLTLFDHPLTDALHTIYHEPKA 842

[Close]

BLAST of CmoCh09G006090 vs. NCBI nr
Match: XP_022936578.1 (endoribonuclease YBEY, chloroplastic [Cucurbita moschata])

HSP 1 Score: 827.0 bits (2135), Expect = 1.0e-235
Identity = 437/478 (91.42%), Postives = 440/478 (92.05%), Query Frame = 0


Query: 36  MLLRASPLLRASHRPFSSGVHMALAAHLPVSPNRQSFHSWRSSSHLPPVCQANGYDRIST 95
           MLLRASPLLRASHRPFSSGVHMALAAHLPVSPNRQSFHSWRSSSHLPPVCQANGYDRIST
Sbjct: 1   MLLRASPLLRASHRPFSSGVHMALAAHLPVSPNRQSFHSWRSSSHLPPVCQANGYDRIST 60

Query: 96  KITFPQFVRSFYVLSGTYNKVQRPCGRIFCGQREYRKVRRRVPKTKRKELELNVSICIEE 155
           KITFPQFVRSFYVLSGTYNKVQRPCGRIFCGQREYRKVRRRVPKTKRKELELNVSICIEE
Sbjct: 61  KITFPQFVRSFYVLSGTYNKVQRPCGRIFCGQREYRKVRRRVPKTKRKELELNVSICIEE 120

Query: 156 KLPDDPELLSIAEMLRLNVPKALKLAFNNLKDSQYKTRDSSINDVGLFESVEMSVLLCND 215
           KLPDDPELLSIAEMLRLNVPKALKLAFNNLKDSQYKTRDSSINDVGLFESVEMSVLLCND
Sbjct: 121 KLPDDPELLSIAEMLRLNVPKALKLAFNNLKDSQYKTRDSSINDVGLFESVEMSVLLCND 180

Query: 216 EFICKLNKEWRDEDHATDVLSMSQHVPELKLPILMLGDIVISVETAARQAEERGHTLLDE 275
           EFICKLNKEWRDEDHATDVLSMSQHVPELKLPILMLGDIVISVETAARQAEERGHTLLDE
Sbjct: 181 EFICKLNKEWRDEDHATDVLSMSQHVPELKLPILMLGDIVISVETAARQAEERGHTLLDE 240

Query: 276 IRILLVHGLLHLLGFDHEISEEAEVEMEKEEELLLKSLEWKGKGLIQSAIDAETNSNSVA 335
           IRILLVHGLLHLLGFDHEISEEAEVEMEKEEELLLKSLEWKGKGLIQSAIDAETNSNSVA
Sbjct: 241 IRILLVHGLLHLLGFDHEISEEAEVEMEKEEELLLKSLEWKGKGLIQSAIDAETNSNSVA 300

Query: 336 EVSDGKKKEVSDSTAQGSAIFSVIWMVRALLRRIQIIPRPVVLTC----TLLNSKSQITP 395
           EVSD +KKE       GS  F                PR   + C    TLLNSKSQITP
Sbjct: 301 EVSDDRKKE-------GSLRF--------------YRPRFSYIFCDMDGTLLNSKSQITP 360

Query: 396 TTVKALKEALSRGVKVVIATGKARPAVISILEKAGLAGKDGAVSEFSPG----GLLVYGR 455
           TTVKALKEALSRGVKVVIATGKARPAVISILEKAGLAGKDGAVSEFSPG    GLLVYGR
Sbjct: 361 TTVKALKEALSRGVKVVIATGKARPAVISILEKAGLAGKDGAVSEFSPGVFLQGLLVYGR 420

Query: 456 QGKEIYRRNLDQDICREACLYSLEKNVPLIAFGEGRCLTLFDHPLTDALHTIYHEPKS 506
           QGKEIYRRNLDQDICREACLYSLEKNVPLIAFGEGRCLTLFDHPLTDALHTIYHEPK+
Sbjct: 421 QGKEIYRRNLDQDICREACLYSLEKNVPLIAFGEGRCLTLFDHPLTDALHTIYHEPKA 457

[Close]

BLAST of CmoCh09G006090 vs. NCBI nr
Match: XP_023534861.1 (endoribonuclease YBEY, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 805.8 bits (2080), Expect = 2.5e-229
Identity = 428/478 (89.54%), Postives = 434/478 (90.79%), Query Frame = 0


Query: 36  MLLRASPLLRASHRPFSSGVHMALAAHLPVSPNRQSFHSWRSSSHLPPVCQANGYDRIST 95
           MLLRASPLLRASHRPFSSGVHMALAAHL V PN QSF SWRSSSHLPPVCQANGYDRIS 
Sbjct: 1   MLLRASPLLRASHRPFSSGVHMALAAHLLVYPNHQSFPSWRSSSHLPPVCQANGYDRISP 60

Query: 96  KITFPQFVRSFYVLSGTYNKVQRPCGRIFCGQREYRKVRRRVPKTKRKELELNVSICIEE 155
           K+TF QFVRSFYVLSGT+NKVQRPCGRIFCGQREYRKVRRRVPKTK+KELELNVSICIEE
Sbjct: 61  KLTFSQFVRSFYVLSGTHNKVQRPCGRIFCGQREYRKVRRRVPKTKKKELELNVSICIEE 120

Query: 156 KLPDDPELLSIAEMLRLNVPKALKLAFNNLKDSQYKTRDSSINDVGLFESVEMSVLLCND 215
           KLPDDPELLSIAEMLRLNVPKALKLAFNNLKDSQYKTRDSSINDVGLFESVEMSVLLCND
Sbjct: 121 KLPDDPELLSIAEMLRLNVPKALKLAFNNLKDSQYKTRDSSINDVGLFESVEMSVLLCND 180

Query: 216 EFICKLNKEWRDEDHATDVLSMSQHVPELKLPILMLGDIVISVETAARQAEERGHTLLDE 275
           EFICKLNKEWRDEDHATDVLSMSQHVPELKLPILMLGDIVISVETAARQAEERGHTLLDE
Sbjct: 181 EFICKLNKEWRDEDHATDVLSMSQHVPELKLPILMLGDIVISVETAARQAEERGHTLLDE 240

Query: 276 IRILLVHGLLHLLGFDHEISEEAEVEMEKEEELLLKSLEWKGKGLIQSAIDAETNSNSVA 335
           IRILLVHGLLHLLGFDHEISEEAEVEMEKEEELLLKSLEWKGKGLIQSAIDAETNSNSVA
Sbjct: 241 IRILLVHGLLHLLGFDHEISEEAEVEMEKEEELLLKSLEWKGKGLIQSAIDAETNSNSVA 300

Query: 336 EVSDGKKKEVSDSTAQGSAIFSVIWMVRALLRRIQIIPRPVVLTC----TLLNSKSQITP 395
           EVSD +KKE       GS  F                PR   + C    TLLNSKSQITP
Sbjct: 301 EVSDDRKKE-------GSLRF--------------YRPRFSYIFCDMDGTLLNSKSQITP 360

Query: 396 TTVKALKEALSRGVKVVIATGKARPAVISILEKAGLAGKDGAVSEFSPG----GLLVYGR 455
           TTVKALKEALSRGVKVVIATGKARPAVISILEKAGLAGKDGAVSEFSPG    GLLVYGR
Sbjct: 361 TTVKALKEALSRGVKVVIATGKARPAVISILEKAGLAGKDGAVSEFSPGVFLQGLLVYGR 420

Query: 456 QGKEIYRRNLDQDICREACLYSLEKNVPLIAFGEGRCLTLFDHPLTDALHTIYHEPKS 506
           QGKEIYRRNLDQDICREACLYSLEKNVPLIAFGEGRCLTLFDHPLTDALHTIYHEPK+
Sbjct: 421 QGKEIYRRNLDQDICREACLYSLEKNVPLIAFGEGRCLTLFDHPLTDALHTIYHEPKA 457

[Close]

BLAST of CmoCh09G006090 vs. NCBI nr
Match: XP_022975664.1 (endoribonuclease YBEY, chloroplastic [Cucurbita maxima])

HSP 1 Score: 800.8 bits (2067), Expect = 8.0e-228
Identity = 427/478 (89.33%), Postives = 432/478 (90.38%), Query Frame = 0


Query: 36  MLLRASPLLRASHRPFSSGVHMALAAHLPVSPNRQSFHSWRSSSHLPPVCQANGYDRIST 95
           MLLRASPLLRASHRPFSSGVHMALAAH  V PN QSF SWRSSSHLPPVCQANGYDRIS 
Sbjct: 1   MLLRASPLLRASHRPFSSGVHMALAAH--VLPNHQSFPSWRSSSHLPPVCQANGYDRISP 60

Query: 96  KITFPQFVRSFYVLSGTYNKVQRPCGRIFCGQREYRKVRRRVPKTKRKELELNVSICIEE 155
           K+TF QFVRSFYVLSGTYNKVQRPCGRIFCGQREYRKVRRRVPKTK+KELELNVSICIEE
Sbjct: 61  KLTFSQFVRSFYVLSGTYNKVQRPCGRIFCGQREYRKVRRRVPKTKKKELELNVSICIEE 120

Query: 156 KLPDDPELLSIAEMLRLNVPKALKLAFNNLKDSQYKTRDSSINDVGLFESVEMSVLLCND 215
           KLPDDPELLSIAEMLRLNVPKALKLAFNNLKDSQYKTRDSSINDVGLFESVEMSVLLCND
Sbjct: 121 KLPDDPELLSIAEMLRLNVPKALKLAFNNLKDSQYKTRDSSINDVGLFESVEMSVLLCND 180

Query: 216 EFICKLNKEWRDEDHATDVLSMSQHVPELKLPILMLGDIVISVETAARQAEERGHTLLDE 275
           EFICKLNKEWRDEDHATDVLSMSQHVPELKLPILMLGDIVISVETAARQAEERGHTLLDE
Sbjct: 181 EFICKLNKEWRDEDHATDVLSMSQHVPELKLPILMLGDIVISVETAARQAEERGHTLLDE 240

Query: 276 IRILLVHGLLHLLGFDHEISEEAEVEMEKEEELLLKSLEWKGKGLIQSAIDAETNSNSVA 335
           IRILLVHGLLHLLGFDHEISEEAEVEMEKEEELLLKSLEWKGKGLIQSAIDAETNSNSVA
Sbjct: 241 IRILLVHGLLHLLGFDHEISEEAEVEMEKEEELLLKSLEWKGKGLIQSAIDAETNSNSVA 300

Query: 336 EVSDGKKKEVSDSTAQGSAIFSVIWMVRALLRRIQIIPRPVVLTC----TLLNSKSQITP 395
           EVSD +KKE       GS  F                PR   + C    TLLNSKSQITP
Sbjct: 301 EVSDDRKKE-------GSLRF--------------YRPRFSYIFCDMDGTLLNSKSQITP 360

Query: 396 TTVKALKEALSRGVKVVIATGKARPAVISILEKAGLAGKDGAVSEFSPG----GLLVYGR 455
           TTVKALKEALSRGVKVVIATGKARPAVISILEKAGLAGKDG VSEFSPG    GLLVYGR
Sbjct: 361 TTVKALKEALSRGVKVVIATGKARPAVISILEKAGLAGKDGVVSEFSPGVFLQGLLVYGR 420

Query: 456 QGKEIYRRNLDQDICREACLYSLEKNVPLIAFGEGRCLTLFDHPLTDALHTIYHEPKS 506
           QGKEIYRRNLDQDICREACLYSLEKNVPLIAFGEGRCLTLFDHPLTDALHTIYHEPK+
Sbjct: 421 QGKEIYRRNLDQDICREACLYSLEKNVPLIAFGEGRCLTLFDHPLTDALHTIYHEPKA 455

[Close]

BLAST of CmoCh09G006090 vs. NCBI nr
Match: KAG7024608.1 (Sugar phosphatase YidA [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 760.4 bits (1962), Expect = 1.2e-215
Identity = 407/481 (84.62%), Postives = 411/481 (85.45%), Query Frame = 0


Query: 36  MLLRASPLLRASHRPFSSGVHMALAAHLPVSPNRQSFHSWRSSSHLPPVCQANGYDRIST 95
           MLLRASPLLRASHRPFSSGVHMALAAHLPVSPNRQS HSWRSSSHLPPVCQANGYDRIST
Sbjct: 1   MLLRASPLLRASHRPFSSGVHMALAAHLPVSPNRQSLHSWRSSSHLPPVCQANGYDRIST 60

Query: 96  KITFPQFVRSFYVLSGTYNKVQRPCGRIFCGQREYRKVRRRVPKTKRKELELNVSICIEE 155
           KITFPQFVRSFYVLSGTYNKVQRPCGRIFCGQREYRKVRRRVPKTK+KELELNVSICIEE
Sbjct: 61  KITFPQFVRSFYVLSGTYNKVQRPCGRIFCGQREYRKVRRRVPKTKKKELELNVSICIEE 120

Query: 156 KLPDDPELLSIAEMLRLNVPKALKLAFNNLKDSQYKTRDSSINDVGLFESVEMSVLLCND 215
           KLPDDPELLSIAEMLRLNVPKALKLAFNNLKDSQYKTRDSSINDVGLFESVEMSVLLCND
Sbjct: 121 KLPDDPELLSIAEMLRLNVPKALKLAFNNLKDSQYKTRDSSINDVGLFESVEMSVLLCND 180

Query: 216 EFICKLNKEWRDEDHATDVLSMSQHVPELKLPILMLGDIVISVETAARQAEERGHTLLDE 275
           EFICKLNKEWRDEDHATDVLSMSQHVPELKLPILMLGDIVISVETAARQAEERGHTLLDE
Sbjct: 181 EFICKLNKEWRDEDHATDVLSMSQHVPELKLPILMLGDIVISVETAARQAEERGHTLLDE 240

Query: 276 IRILLVHGLLHLLGFDHEISEEAEVEMEKEEELLLKSLEWKGKGLIQSAIDAETNSNSVA 335
           IRILLVHGLLHLLGFDHEISEEAEVEMEKEEELLLKSLEWKGKGLIQSAIDAETNSNSVA
Sbjct: 241 IRILLVHGLLHLLGFDHEISEEAEVEMEKEEELLLKSLEWKGKGLIQSAIDAETNSNSVA 300

Query: 336 EVSD-------GKKKEVSDSTAQGSAIFSVIWMVRALLRRIQIIPRPVVLTC----TLLN 395
           EVSD            V D   +GS  F                PR   + C    TLLN
Sbjct: 301 EVSDDHVLCVRSYYSHVKDRKKEGSLRF--------------YRPRFSYIFCDMDGTLLN 360

Query: 396 SKSQITPTTVKALKEALSRGVKVVIATGKARPAVISILEKAGLAGKDGAVSEFSPGGLLV 455
           SKSQITPTTVKALKEALSRGVKVVIATGK                           GLLV
Sbjct: 361 SKSQITPTTVKALKEALSRGVKVVIATGK---------------------------GLLV 420

Query: 456 YGRQGKEIYRRNLDQDICREACLYSLEKNVPLIAFGEGRCLTLFDHPLTDALHTIYHEPK 506
           YGRQGKEIYRRNLDQDICREACLYSLEKNVPLIAFGEGRCLTLFDHPLTDALHTIYHEPK
Sbjct: 421 YGRQGKEIYRRNLDQDICREACLYSLEKNVPLIAFGEGRCLTLFDHPLTDALHTIYHEPK 440

[Close]

BLAST of CmoCh09G006090 vs. TAIR 10
Match: AT2G25870.1 (haloacid dehalogenase-like hydrolase family protein )

HSP 1 Score: 510.4 bits (1313), Expect = 2.0e-144
Identity = 286/477 (59.96%), Postives = 343/477 (71.91%), Query Frame = 0


Query: 36  MLLRASPLLRASHRPFSSGVHMALAAHLPVSPNRQSFHSWRSSSHLPPVCQANGYDRIST 95
           ML R  P LR +    +    M  A  L + PN   FHS       P     N  D  S+
Sbjct: 1   MLSRVCPTLRYNRIWSAHAREMPRATLLLLQPN--FFHS------SPKTALVNRLDVTSS 60

Query: 96  KITFPQFVRSFYVLS---GTYNKVQRPCGRIFCGQREYRKVRRRVPKTKRKELELNVSIC 155
           + +   F RSF+ L    G + K+ +P G++F  +REYRK+RRR PK K++ELEL+VSIC
Sbjct: 61  EFS-SMFRRSFHALRSTVGDWRKLPKPPGQVFAERREYRKIRRRAPK-KKQELELSVSIC 120

Query: 156 IEEKLPDDPELLSIAEMLRLNVPKALKLAFNNLKDSQYKTRDSSINDVGLFESVEMSVLL 215
           IEE+LPDD E+ +IAEMLRLNVP A+ LAFN LKDS+YKTR++ I D+G +E+VE+SV+L
Sbjct: 121 IEEQLPDDLEIQNIAEMLRLNVPMAMTLAFNGLKDSKYKTRETDIEDLGGYETVELSVML 180

Query: 216 CNDEFICKLNKEWRDEDHATDVLSMSQHVPELKLPILMLGDIVISVETAARQAEERGHTL 275
           CND+FICKLNKEWR EDHATDVLSMSQHVPELKLP+LM+GD+VISVETAARQA ERGHTL
Sbjct: 181 CNDDFICKLNKEWRGEDHATDVLSMSQHVPELKLPVLMMGDLVISVETAARQAAERGHTL 240

Query: 276 LDEIRILLVHGLLHLLGFDHEISEEAEVEMEKEEELLLKSLEWKGKGLIQSAIDAETNSN 335
           LDEIRIL++HGLLHLLGFDHEIS+EAE EME+EEELLLK+L WKGKGLIQSA D +  + 
Sbjct: 241 LDEIRILVIHGLLHLLGFDHEISDEAEQEMEEEEELLLKNLGWKGKGLIQSAYDIQKTTT 300

Query: 336 SVAEVSDGKKKEVSDSTAQGSAIFSVIWMVRALLRRIQIIPRPVVLTCTLLNSKSQITPT 395
              E SD +K+   D        FS I+                 +  TLLNSKSQI+  
Sbjct: 301 VQPEKSDDRKE--GDGLRLYKPKFSYIF---------------CDMDGTLLNSKSQISEA 360

Query: 396 TVKALKEALSRGVKVVIATGKARPAVISILEKAGLAGKDGAVSEFSPG----GLLVYGRQ 455
             KALKEAL RG+KVVIATGK+RP  I IL+ A L G DG +SE SPG    GLLVYGRQ
Sbjct: 361 NAKALKEALLRGLKVVIATGKSRPGAIRILKTADLTGSDGIISESSPGVFVQGLLVYGRQ 420

Query: 456 GKEIYRRNLDQDICREACLYSLEKNVPLIAFGEGRCLTLFDHPLTDALHTIYHEPKS 506
           GKE+YR NLD+D+CRE CLYSLE  +PLIAF + RCLTLFDHPL D+LHTIY+EPK+
Sbjct: 421 GKEVYRGNLDRDVCRETCLYSLEHRIPLIAFSQDRCLTLFDHPLVDSLHTIYNEPKA 450

[Close]

BLAST of CmoCh09G006090 vs. TAIR 10
Match: ATCG00170.1 (DNA-directed RNA polymerase family protein )

HSP 1 Score: 134.0 bits (336), Expect = 3.9e-31
Identity = 63/96 (65.62%), Postives = 75/96 (78.12%), Query Frame = 0


Query: 505 STDVYHGPEFTYSNVHLLPKTSHLWILSGGSCGCSIVPFSLYKDQDQINVHSLSVERRYI 564
           STDV H PEFTYSNVHLLPKTSHLWILSGGSCG S++ FS++KDQDQ+N+  LS ER+ I
Sbjct: 453 STDVSHAPEFTYSNVHLLPKTSHLWILSGGSCGSSLIRFSIHKDQDQMNIPFLSAERKSI 512

Query: 565 SSFSVDNDKVRQKFYGPDFSGKNESGIPDYSVYMAN 601
           SS SV+ND+V QKF+  DF+   + GI DYS    N
Sbjct: 513 SSLSVNNDQVSQKFFSSDFADPKKLGIYDYSELNGN 548

The following BLAST results are available for this feature:

BLAST of CmoCh09G006090 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8L5Z4	2.8e-143	59.96	Endoribonuclease YBEY, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=YBEY PE=...	[more]
Q4VZP3	8.7e-44	91.21	DNA-directed RNA polymerase subunit beta'' OS=Cucumis sativus OX=3659 GN=rpoC2 P...	[more]
B1NWE0	1.2e-37	82.42	DNA-directed RNA polymerase subunit beta'' OS=Manihot esculenta OX=3983 GN=rpoC2...	[more]
A4QJA5	9.0e-33	71.43	DNA-directed RNA polymerase subunit beta'' OS=Aethionema cordifolium OX=434059 G...	[more]
B1A925	1.5e-32	70.97	DNA-directed RNA polymerase subunit beta'' OS=Carica papaya OX=3649 GN=rpoC2 PE=...	[more]

BLAST of CmoCh09G006090 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FDM0	5.0e-236	91.42	endoribonuclease YBEY, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC1114431...	[more]
A0A6J1IL90	3.9e-228	89.33	endoribonuclease YBEY, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111475505...	[more]
A0A0A0LJV1	2.6e-208	81.59	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G895080 PE=3 SV=1	[more]
A0A1S3CQE9	7.6e-208	81.84	uncharacterized protein LOC103503611 OS=Cucumis melo OX=3656 GN=LOC103503611 PE=...	[more]
A0A6J1CCA3	3.1e-201	80.54	uncharacterized protein LOC111009890 OS=Momordica charantia OX=3673 GN=LOC111009...	[more]

BLAST of CmoCh09G006090 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6591726.1	3.2e-253	91.02	Endoribonuclease YBEY, chloroplastic, partial [Cucurbita argyrosperma subsp. sor...	[more]
XP_022936578.1	1.0e-235	91.42	endoribonuclease YBEY, chloroplastic [Cucurbita moschata]	[more]
XP_023534861.1	2.5e-229	89.54	endoribonuclease YBEY, chloroplastic [Cucurbita pepo subsp. pepo]	[more]
XP_022975664.1	8.0e-228	89.33	endoribonuclease YBEY, chloroplastic [Cucurbita maxima]	[more]
KAG7024608.1	1.2e-215	84.62	Sugar phosphatase YidA [Cucurbita argyrosperma subsp. argyrosperma]	[more]

BLAST of CmoCh09G006090 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G25870.1	2.0e-144	59.96	haloacid dehalogenase-like hydrolase family protein	[more]
ATCG00170.1	3.9e-31	65.63	DNA-directed RNA polymerase family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR023214	HAD superfamily	GENE3D	3.40.50.1000		coord: 380..483 e-value: 2.7E-11 score: 45.6
IPR002036	Endoribonuclease YbeY	TIGRFAM	TIGR00043	TIGR00043	coord: 207..313 e-value: 5.5E-31 score: 104.9
IPR002036	Endoribonuclease YbeY	PFAM	PF02130	UPF0054	coord: 200..312 e-value: 1.5E-32 score: 112.1
IPR002036	Endoribonuclease YbeY	PANTHER	PTHR46986	ENDORIBONUCLEASE YBEY, CHLOROPLASTIC	coord: 70..505
IPR002036	Endoribonuclease YbeY	HAMAP	MF_00009	Endoribonucl_YbeY	coord: 144..322 score: 21.292931
IPR023091	Metalloprotease catalytic domain superfamily, predicted	GENE3D	3.40.390.30	Metalloproteases ("zincins"), catalytic domain	coord: 177..319 e-value: 1.3E-38 score: 133.8
None	No IPR available	PFAM	PF08282	Hydrolase_3	coord: 381..489 e-value: 2.0E-11 score: 44.2
None	No IPR available	PANTHER	PTHR46986:SF1	ENDORIBONUCLEASE YBEY, CHLOROPLASTIC	coord: 70..505
None	No IPR available	SUPERFAMILY	55486	Metalloproteases ("zincins"), catalytic domain	coord: 204..318
IPR020549	Endoribonuclease YbeY, conserved site	PROSITE	PS01306	UPF0054	coord: 282..292
IPR036412	HAD-like superfamily	SUPERFAMILY	56784	HAD-like	coord: 380..513

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh09G006090.1	CmoCh09G006090.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009658	chloroplast organization
biological_process	GO:1901259	chloroplast rRNA processing
biological_process	GO:0006508	proteolysis
biological_process	GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic
biological_process	GO:0006364	rRNA processing
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0004521	endoribonuclease activity
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0004222	metalloendopeptidase activity