CmoCh09G005890 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh09G005890
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	MADS-box transcription factor 23-like isoform X1
Location	Cmo_Chr09: 2898282 .. 2901053 (+)
RNA-Seq Expression	CmoCh09G005890
Synteny	CmoCh09G005890

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTACGGCAGCAACTCCAGAGCTTACATGAAAATCATCGGTACTAACGTATCCTATTCTATTCTATGTCGTTACATGTTACTTGATAAACACTAATACCAGAGGAAAATGCAATAAAGTGAAATGCAAAATGAAACTTCTTTCAATTCCTTAATGGCCATAGCGTTAAGTGAATTGAGCCTAAAATCTTCCTCATTAACTCATTACCATGTGCTTAATGAGATATGGGAATAGCATTTATTGACGACCAAGCATGACCCAAATGTATATTTTCTAACATACTTCCACATGCTGCTCAAGTTAAAGCTGATACACAAGCTGAAAGAAAATGAATCTTAGAAAAGTTCAAAACACCACTAATAGATAATAACTATCAGGCAAATGATGGGTGAAGAGCTGACTGGTCTAAGCGTCAAAGATCTGCAGAATCTAGAAAATCAATTGGAGATGAGTCTCCGTGGCATCCGTATGAAGAAGGTATCTAACTATGTCATTTGTTAAATGCATTTGGTGTTATACTGAACTTTTCGCTTCTTTGAGCAGGACAAAATTTTAATGGATGAGATACAAGACCTAAATAGAAAGGTTAAGGAACTACGGCTCTGAAATTTTGTTCTCAATTGTTTTGGTTGCTAAATATCCTTCTTTTTGATACAGGTAAACCTAATTCACCAAGACAATATGGAACTCTATAAGAAGGTAAATCTAATTCATCAAGAAAATCTGGAATTACAGAAAAAGGTACAGATGTAGATAACTGGAACAACTTTAATTATTACCAAAAAGAAACTTAGGATTAAATTGTTAAACCAATAAAACTTTGTGTTGTTTAGTTACCCTCAAAACAAATTTTTGACCATCCTAGGTCTATGGAACAAAAGATGCCAATGGAGCACACATAAGCAGTCTTACAAACGGACTTAGTTTTGGAGAGGATGCAGGCATACCTATCGACCTTCAGCTCAGCCAGCCACAGCCACAAGAACATGCGGCACCAGAAAGAGCTACAAAACTAGGGTAAAATTACGAAAAAAATTCATAAATGTTCTACATGAATACAAATGAACTTTTCCAGGGTCACTATTTCAATCTTGTTCTTTTGATGGTTGCAGCAGACTATAGCTACGCTAGCAAAAAGACACCCTACACCAACCAGGAAGATGTTTCTTATTTTGCATCAAGAAAACGGTGTATGGTTGCTAATTATCTTTCAATCGACGAGATGTGGTAGAGTAGCGGATTATTCCATACCAAAAGAAACCAGCTTTGTCTAGTTTGTGGTGATTAAAACAAGCGTATTTTTGTGAAGAGAAGACTATGCAAAACAAAAAATAATTGGAACCGCACCAGCATGCACACTTCATTTTCCAGAAATCTTAAGGTCTGTTTGCTATCTTCATTATAATCGGCTAGGTTCAAATGTTCATACTTATTTTAAGACTGATGCTTGCGATATAATAAAGGAAAATTCTGGAGAATCGTCCAGAAAAGGAAACAAGTAGATTAAAAAAGAACATTTATCGTACACTAATTCCACCCAACAATTGTATATGATACTCATCATGAAAGGGCATATAATATTTACCTCGAATCTCTCTTGCTCGACTAGAGTAAACTGTCCCAGCAGTCTGTTTAGAAAGATAAATTGCATGACATTAGAGTAAGCAACAATTCAGCAAAGAAATTTAATAGATAAATTATTATTAAAAAAACCCATCTCTACTAAACAGAGTCATTATTAAATCCAAGACAATAATTTAATCAGTACATCGATATTCCCAACAGCATAAATCCAATTTTTAAAGTAAGTAAATTATTAAATATGAAGGGAAGGGCCAAACTCCATAGAAGTTATATATGAGACGTTACAATTGTTGGCAATATAGTGTAACTGGATGAAGGATTATGCTCGCCAGGTTGCTAATATACACCTAAAGTTTGAGACCACCTTACACATAAACAAGAACATTCCCAAATGGATATGATATAAATGGCAGAAAATGATGGAAAAAGAATTACAAATGGTTCACAAACATATTGCATTGCACATCACAGAAACCATCAATATATAAAGTACTTTTGCAGAAAACAGTCTTAATAACAGCTTATAAAGTAAACGAGGCCTCTAGAGAATCAAAAATAATCTAGCTACTAACTTGAATGTATTCCTAGCTAGCTTAGAGCCACTGACCTTCAATAATGTGCACAATGCATAAATAGAATAGGCTTTAGAATGATCTAGTTAAATTATTCCTATTTTCAGTAACAAAAAAAATAAACATTGAAATTCGTGGCATGCATGAACACCTATGATTATTAGATATAAAATGCCTATGGGAGGAGTTACTAACAGATAATGGAATGCAGGTGACAGAAAGAAATTGTTGGTCCTCTGAGAATCGATCCTGGAACCTTCTCTCCAGAAGGAACATTAGAGAAGCTGAAATTGAAAAGTGGGTTAATCACTCCAACTTGCTTTCCCAATTTACCTCCTCACAGAATGCTGATTACTGGCCTTGGAACGTTGAAAAGGATGAGATTTTATTCTTCAAAGTCCCTCTCTCAAACATGGACTTCTTCTTGCACGGGAGGTGATAACATTTATTCTCATATTGGAAAAGGGGCTTACCCTAAGAAGATCAAAAGTTTTATATGGGAGCTCAGCCATTCATGCATCATAACTCAAGATTGCCTACAAAGGAGGCTCCCTTGGCTCTATCTCTCCCACAATTATGTCCTTTTTGTTACAGGGATGCTGAAACGCAGATACA

mRNA sequence

ATGTTACGGCAGCAACTCCAGAGCTTACATGAAAATCATCGGCAAATGATGGGTGAAGAGCTGACTGGTCTAAGCGTCAAAGATCTGCAGAATCTAGAAAATCAATTGGAGATGAGTCTCCGTGGCATCCGTATGAAGAAGGACAAAATTTTAATGGATGAGATACAAGACCTAAATAGAAAGGTAAACCTAATTCACCAAGACAATATGGAACTCTATAAGAAGGTCTATGGAACAAAAGATGCCAATGGAGCACACATAAGCAGTCTTACAAACGGACTTAGTTTTGGAGAGGATGCAGGCATACCTATCGACCTTCAGCTCAGCCAGCCACAGCCACAAGAACATGCGGCACCAGAAAGAGCTACAAAACTAGGACTATAGCTACGCTAGCAAAAAGACACCCTACACCAACCAGGAAGATGTTTCTTATTTTGCATCAAGAAAACGGTGTATGGTTGCTAATTATCTTTCAATCGACGAGATGTGGTAGAGTAGCGGATTATTCCATACCAAAAGAAACCAGCTTTGTCTAGTTTGTGGTGATTAAAACAAGCGTATTTTTGTGAAGAGAAGACTATGCAAAACAAAAAATAATTGGAACCGCACCAGCATGCACACTTCATTTTCCAGAAATCTTAAGGTGACAGAAAGAAATTGTTGGTCCTCTGAGAATCGATCCTGGAACCTTCTCTCCAGAAGGAACATTAGAGAAGCTGAAATTGAAAAGTGGGTTAATCACTCCAACTTGCTTTCCCAATTTACCTCCTCACAGAATGCTGATTACTGGCCTTGGAACGTTGAAAAGGATGAGATTTTATTCTTCAAAGTCCCTCTCTCAAACATGGACTTCTTCTTGCACGGGAGGGATGCTGAAACGCAGATACA

Coding sequence (CDS)

ATGTTACGGCAGCAACTCCAGAGCTTACATGAAAATCATCGGCAAATGATGGGTGAAGAGCTGACTGGTCTAAGCGTCAAAGATCTGCAGAATCTAGAAAATCAATTGGAGATGAGTCTCCGTGGCATCCGTATGAAGAAGGACAAAATTTTAATGGATGAGATACAAGACCTAAATAGAAAGGTAAACCTAATTCACCAAGACAATATGGAACTCTATAAGAAGGTCTATGGAACAAAAGATGCCAATGGAGCACACATAAGCAGTCTTACAAACGGACTTAGTTTTGGAGAGGATGCAGGCATACCTATCGACCTTCAGCTCAGCCAGCCACAGCCACAAGAACATGCGGCACCAGAAAGAGCTACAAAACTAGGACTATAG

Protein sequence

MLRQQLQSLHENHRQMMGEELTGLSVKDLQNLENQLEMSLRGIRMKKDKILMDEIQDLNRKVNLIHQDNMELYKKVYGTKDANGAHISSLTNGLSFGEDAGIPIDLQLSQPQPQEHAAPERATKLGL

Homology

[Close]

BLAST of CmoCh09G005890 vs. ExPASy Swiss-Prot
Match: A2RVQ5 (Agamous-like MADS-box protein AGL16 OS=Arabidopsis thaliana OX=3702 GN=AGL16 PE=1 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 2.3e-26
Identity = 73/142 (51.41%), Postives = 97/142 (68.31%), Query Frame = 0


Query: 1   MLRQQLQSLHENHRQMMGEELTGLSVKDLQNLENQLEMSLRGIRMKKDKILMDEIQDLNR 60
           +L++QL +L ENHRQMMGEEL+GLSV+ LQNLENQLE+SLRG+RMKKD++L++EIQ LNR
Sbjct: 95  ILKRQLHNLQENHRQMMGEELSGLSVEALQNLENQLELSLRGVRMKKDQMLIEEIQVLNR 154

Query: 61  KVNLIHQDNMELYKK-----------------VYGTKDANGAHISSLTNGLSFGEDAGIP 120
           + NL+HQ+N++L+KK                 V G K AN    S LTNGL   + +   
Sbjct: 155 EGNLVHQENLDLHKKVNLMHQQNMELHEKVSEVEGVKIAN--KNSLLTNGLDMRDTSNEH 214

Query: 121 IDLQLSQPQPQEHAAPERATKL 126
           + LQLSQPQ  +H    +A +L
Sbjct: 215 VHLQLSQPQ-HDHETHSKAIQL 233

[Close]

BLAST of CmoCh09G005890 vs. ExPASy Swiss-Prot
Match: Q6EP49 (MADS-box transcription factor 27 OS=Oryza sativa subsp. japonica OX=39947 GN=MADS27 PE=2 SV=2)

HSP 1 Score: 112.1 bits (279), Expect = 4.7e-24
Identity = 67/141 (47.52%), Postives = 89/141 (63.12%), Query Frame = 0


Query: 2   LRQQLQSLHENHRQMMGEELTGLSVKDLQNLENQLEMSLRGIRMKKDKILMDEIQDLNRK 61
           LRQQL +L ENHRQ+MGE+L+GL+VK+LQ+LENQLE+SLR +R KKD +L+DEI +LNRK
Sbjct: 96  LRQQLHNLQENHRQLMGEDLSGLNVKELQSLENQLEISLRSVRTKKDHVLIDEIHELNRK 155

Query: 62  VNLIHQDNM--------------ELYKKVYGTKDANGAHISSLT-NGLSFGEDAGIPIDL 121
            +L+HQ+NM              ELYKK+Y T+  +  +  S T    +  E   +P+ L
Sbjct: 156 GSLVHQENMELYKKISLIRQENAELYKKIYETEGPSEVNRDSPTPYNFAVIEKTNVPVQL 215

Query: 122 QLSQPQPQEHAAPERATKLGL 128
            LS       A    A KLGL
Sbjct: 216 GLSTLPQHSDAEQSTAPKLGL 236

[Close]

BLAST of CmoCh09G005890 vs. ExPASy Swiss-Prot
Match: Q38840 (Agamous-like MADS-box protein AGL17 OS=Arabidopsis thaliana OX=3702 GN=AGL17 PE=1 SV=2)

HSP 1 Score: 109.0 bits (271), Expect = 4.0e-23
Identity = 66/129 (51.16%), Postives = 87/129 (67.44%), Query Frame = 0


Query: 2   LRQQLQSLHENHRQMMGEELTGLSVKDLQNLENQLEMSLRGIRMKKDKILMDEIQDLNRK 61
           LRQ+L SL EN+RQ+ G EL GLSVK+LQN+E+QLEMSLRGIRMK+++IL +EI++L RK
Sbjct: 96  LRQELHSLQENYRQLTGVELNGLSVKELQNIESQLEMSLRGIRMKREQILTNEIKELTRK 155

Query: 62  VNL--------------IHQDNMELYKKVYGTKDANGAHISSLTNGLSFGEDAGIPIDLQ 117
            NL              IHQ+N+ELYKK YGT + NG     L + +    ++   + LQ
Sbjct: 156 RNLVHHENLELSRKVQRIHQENVELYKKAYGTSNTNGLGHHELVDAV---YESHAQVRLQ 215

[Close]

BLAST of CmoCh09G005890 vs. ExPASy Swiss-Prot
Match: Q9SZJ6 (Agamous-like MADS-box protein AGL21 OS=Arabidopsis thaliana OX=3702 GN=AGL21 PE=1 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 6.8e-23
Identity = 64/135 (47.41%), Postives = 94/135 (69.63%), Query Frame = 0


Query: 1   MLRQQLQSLHENHRQMMGEELTGLSVKDLQNLENQLEMSLRGIRMKKDKILMDEIQDLNR 60
           +LRQ+L +L ENHRQMMGE+L GLSV +L +LENQ+E+SLRGIRM+K+++L  EIQ+L++
Sbjct: 95  VLRQELHALQENHRQMMGEQLNGLSVNELNSLENQIEISLRGIRMRKEQLLTQEIQELSQ 154

Query: 61  KVNLIHQDNMELYKKVYGTKDAN-----GAHISSLTNGLSFGE------DAGIPIDLQLS 120
           K NLIHQ+N++L +KV      N      A++++ TNG +  E      ++   I LQLS
Sbjct: 155 KRNLIHQENLDLSRKVQRIHQENVELYKKAYMAN-TNGFTHREVAVADDESHTQIRLQLS 214

Query: 121 QPQPQEHAAPERATK 125
           QP+  ++  P RA +
Sbjct: 215 QPEHSDYDTPPRANE 228

[Close]

BLAST of CmoCh09G005890 vs. ExPASy Swiss-Prot
Match: Q6Z6W2 (MADS-box transcription factor 57 OS=Oryza sativa subsp. japonica OX=39947 GN=MADS57 PE=1 SV=2)

HSP 1 Score: 97.1 bits (240), Expect = 1.6e-19
Identity = 65/146 (44.52%), Postives = 90/146 (61.64%), Query Frame = 0


Query: 2   LRQQLQSLHENHRQMMGEELTGLSVKDLQNLENQLEMSLRGIRMKKDKILMDEIQDLNRK 61
           LRQQL +L E+H+Q+MGEEL+GL V+DLQ LEN+LE+SLR IRM+KD +L  EI++L+ K
Sbjct: 95  LRQQLHNLQESHKQLMGEELSGLGVRDLQGLENRLEISLRNIRMRKDNLLKSEIEELHVK 154

Query: 62  VNLIHQDN--------------MELYKKVY-----GTKDANGAHISSLTNGLSFGEDAGI 121
            +LIHQ+N              +ELY K+      G  DAN +  SS        ++A +
Sbjct: 155 GSLIHQENIELSRSLNVMSQQKLELYNKLQACEQRGATDANES--SSTPYSFRIIQNANM 214

Query: 122 PIDLQLSQPQPQE-HAAPERATKLGL 128
           P  L+LSQ Q +E   +   A +LGL
Sbjct: 215 PPSLELSQSQQREGECSKTAAPELGL 238

[Close]

BLAST of CmoCh09G005890 vs. ExPASy TrEMBL
Match: A0A6J1FEC1 (MADS-box transcription factor 23-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111443302 PE=4 SV=1)

HSP 1 Score: 235.0 bits (598), Expect = 1.8e-58
Identity = 126/140 (90.00%), Postives = 126/140 (90.00%), Query Frame = 0


Query: 1   MLRQQLQSLHENHRQMMGEELTGLSVKDLQNLENQLEMSLRGIRMKKDKILMDEIQDLNR 60
           MLRQQLQSLHENHRQMMGEELTGLSVKDLQNLENQLEMSLRGIRMKKDKILMDEIQDLNR
Sbjct: 95  MLRQQLQSLHENHRQMMGEELTGLSVKDLQNLENQLEMSLRGIRMKKDKILMDEIQDLNR 154

Query: 61  KVNLIHQDNMELY--------------KKVYGTKDANGAHISSLTNGLSFGEDAGIPIDL 120
           KVNLIHQDNMELY              KKVYGTKDANGAHISSLTNGLSFGEDAGIPIDL
Sbjct: 155 KVNLIHQDNMELYKKVNLIHQENLELQKKVYGTKDANGAHISSLTNGLSFGEDAGIPIDL 214

Query: 121 QLSQPQPQEHAAPERATKLG 127
           QLSQPQPQEHAAPERATKLG
Sbjct: 215 QLSQPQPQEHAAPERATKLG 234

[Close]

BLAST of CmoCh09G005890 vs. ExPASy TrEMBL
Match: A0A6J1F8L0 (agamous-like MADS-box protein AGL16 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111443302 PE=4 SV=1)

HSP 1 Score: 235.0 bits (598), Expect = 1.8e-58
Identity = 126/140 (90.00%), Postives = 126/140 (90.00%), Query Frame = 0


Query: 1   MLRQQLQSLHENHRQMMGEELTGLSVKDLQNLENQLEMSLRGIRMKKDKILMDEIQDLNR 60
           MLRQQLQSLHENHRQMMGEELTGLSVKDLQNLENQLEMSLRGIRMKKDKILMDEIQDLNR
Sbjct: 79  MLRQQLQSLHENHRQMMGEELTGLSVKDLQNLENQLEMSLRGIRMKKDKILMDEIQDLNR 138

Query: 61  KVNLIHQDNMELY--------------KKVYGTKDANGAHISSLTNGLSFGEDAGIPIDL 120
           KVNLIHQDNMELY              KKVYGTKDANGAHISSLTNGLSFGEDAGIPIDL
Sbjct: 139 KVNLIHQDNMELYKKVNLIHQENLELQKKVYGTKDANGAHISSLTNGLSFGEDAGIPIDL 198

Query: 121 QLSQPQPQEHAAPERATKLG 127
           QLSQPQPQEHAAPERATKLG
Sbjct: 199 QLSQPQPQEHAAPERATKLG 218

[Close]

BLAST of CmoCh09G005890 vs. ExPASy TrEMBL
Match: A0A6J1IIA1 (MADS-box transcription factor 23-like isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111476528 PE=4 SV=1)

HSP 1 Score: 231.9 bits (590), Expect = 1.5e-57
Identity = 119/126 (94.44%), Postives = 122/126 (96.83%), Query Frame = 0


Query: 1   MLRQQLQSLHENHRQMMGEELTGLSVKDLQNLENQLEMSLRGIRMKKDKILMDEIQDLNR 60
           MLRQQLQSLHENHRQMMGEELTGLS KDLQNLENQLE+SLRGIRMKK+KILMDEIQDLNR
Sbjct: 95  MLRQQLQSLHENHRQMMGEELTGLSAKDLQNLENQLEISLRGIRMKKEKILMDEIQDLNR 154

Query: 61  KVNLIHQDNMELYKKVYGTKDANGAHISSLTNGLSFGEDAGIPIDLQLSQPQPQEHAAPE 120
           KVNLIHQDN ELYKKVYGTKDANGAHISSLTNGLS GEDAGIPIDLQLSQPQPQ+H APE
Sbjct: 155 KVNLIHQDNTELYKKVYGTKDANGAHISSLTNGLSVGEDAGIPIDLQLSQPQPQDHEAPE 214

Query: 121 RATKLG 127
           RATKLG
Sbjct: 215 RATKLG 220

[Close]

BLAST of CmoCh09G005890 vs. ExPASy TrEMBL
Match: A0A6J1IM79 (MADS-box transcription factor 23-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111476528 PE=4 SV=1)

HSP 1 Score: 224.2 bits (570), Expect = 3.1e-55
Identity = 120/141 (85.11%), Postives = 123/141 (87.23%), Query Frame = 0


Query: 1   MLRQQLQSLHENHRQMMGEELTGLSVKDLQNLENQLEMSLRGIRMKKDKILMDEIQDLNR 60
           MLRQQLQSLHENHRQMMGEELTGLS KDLQNLENQLE+SLRGIRMKK+KILMDEIQDLNR
Sbjct: 95  MLRQQLQSLHENHRQMMGEELTGLSAKDLQNLENQLEISLRGIRMKKEKILMDEIQDLNR 154

Query: 61  KVNLIHQDNMELY--------------KKVYGTKDANGAHISSLTNGLSFGEDAGIPIDL 120
           KVNLIHQDN ELY              KKVYGTKDANGAHISSLTNGLS GEDAGIPIDL
Sbjct: 155 KVNLIHQDNTELYKKVNLIRQENLELHKKVYGTKDANGAHISSLTNGLSVGEDAGIPIDL 214

Query: 121 QLSQPQPQEHAAPERATKLGL 128
           QLSQPQPQ+H APERATKLGL
Sbjct: 215 QLSQPQPQDHEAPERATKLGL 235

[Close]

BLAST of CmoCh09G005890 vs. ExPASy TrEMBL
Match: A0A6J1IKT5 (MADS-box transcription factor 23-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111476528 PE=4 SV=1)

HSP 1 Score: 222.2 bits (565), Expect = 1.2e-54
Identity = 119/140 (85.00%), Postives = 122/140 (87.14%), Query Frame = 0


Query: 1   MLRQQLQSLHENHRQMMGEELTGLSVKDLQNLENQLEMSLRGIRMKKDKILMDEIQDLNR 60
           MLRQQLQSLHENHRQMMGEELTGLS KDLQNLENQLE+SLRGIRMKK+KILMDEIQDLNR
Sbjct: 95  MLRQQLQSLHENHRQMMGEELTGLSAKDLQNLENQLEISLRGIRMKKEKILMDEIQDLNR 154

Query: 61  KVNLIHQDNMELY--------------KKVYGTKDANGAHISSLTNGLSFGEDAGIPIDL 120
           KVNLIHQDN ELY              KKVYGTKDANGAHISSLTNGLS GEDAGIPIDL
Sbjct: 155 KVNLIHQDNTELYKKVNLIRQENLELHKKVYGTKDANGAHISSLTNGLSVGEDAGIPIDL 214

Query: 121 QLSQPQPQEHAAPERATKLG 127
           QLSQPQPQ+H APERATKLG
Sbjct: 215 QLSQPQPQDHEAPERATKLG 234

[Close]

BLAST of CmoCh09G005890 vs. NCBI nr
Match: KAG6591705.1 (Agamous-like MADS-box protein AGL16, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 235.7 bits (600), Expect = 2.2e-58
Identity = 121/127 (95.28%), Postives = 122/127 (96.06%), Query Frame = 0


Query: 1   MLRQQLQSLHENHRQMMGEELTGLSVKDLQNLENQLEMSLRGIRMKKDKILMDEIQDLNR 60
           MLRQQLQSLHENHRQMMGEELTGLSVKDLQNLENQLEMSL GIRMKKD ILMDEIQDLNR
Sbjct: 1   MLRQQLQSLHENHRQMMGEELTGLSVKDLQNLENQLEMSLHGIRMKKDNILMDEIQDLNR 60

Query: 61  KVNLIHQDNMELYKKVYGTKDANGAHISSLTNGLSFGEDAGIPIDLQLSQPQPQEHAAPE 120
           KVNLIHQDNMELYKK YGTKDANGAHISSLTNGLS GEDAGIPIDLQLSQPQPQ+H APE
Sbjct: 61  KVNLIHQDNMELYKKAYGTKDANGAHISSLTNGLSLGEDAGIPIDLQLSQPQPQDHEAPE 120

Query: 121 RATKLGL 128
           RATKLGL
Sbjct: 121 RATKLGL 127

[Close]

BLAST of CmoCh09G005890 vs. NCBI nr
Match: XP_022936832.1 (MADS-box transcription factor 23-like isoform X1 [Cucurbita moschata] >XP_022936833.1 MADS-box transcription factor 23-like isoform X1 [Cucurbita moschata] >XP_022936834.1 MADS-box transcription factor 23-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 235.0 bits (598), Expect = 3.7e-58
Identity = 126/140 (90.00%), Postives = 126/140 (90.00%), Query Frame = 0


Query: 1   MLRQQLQSLHENHRQMMGEELTGLSVKDLQNLENQLEMSLRGIRMKKDKILMDEIQDLNR 60
           MLRQQLQSLHENHRQMMGEELTGLSVKDLQNLENQLEMSLRGIRMKKDKILMDEIQDLNR
Sbjct: 95  MLRQQLQSLHENHRQMMGEELTGLSVKDLQNLENQLEMSLRGIRMKKDKILMDEIQDLNR 154

Query: 61  KVNLIHQDNMELY--------------KKVYGTKDANGAHISSLTNGLSFGEDAGIPIDL 120
           KVNLIHQDNMELY              KKVYGTKDANGAHISSLTNGLSFGEDAGIPIDL
Sbjct: 155 KVNLIHQDNMELYKKVNLIHQENLELQKKVYGTKDANGAHISSLTNGLSFGEDAGIPIDL 214

Query: 121 QLSQPQPQEHAAPERATKLG 127
           QLSQPQPQEHAAPERATKLG
Sbjct: 215 QLSQPQPQEHAAPERATKLG 234

[Close]

BLAST of CmoCh09G005890 vs. NCBI nr
Match: XP_022936836.1 (agamous-like MADS-box protein AGL16 isoform X2 [Cucurbita moschata])

HSP 1 Score: 235.0 bits (598), Expect = 3.7e-58
Identity = 126/140 (90.00%), Postives = 126/140 (90.00%), Query Frame = 0


Query: 1   MLRQQLQSLHENHRQMMGEELTGLSVKDLQNLENQLEMSLRGIRMKKDKILMDEIQDLNR 60
           MLRQQLQSLHENHRQMMGEELTGLSVKDLQNLENQLEMSLRGIRMKKDKILMDEIQDLNR
Sbjct: 79  MLRQQLQSLHENHRQMMGEELTGLSVKDLQNLENQLEMSLRGIRMKKDKILMDEIQDLNR 138

Query: 61  KVNLIHQDNMELY--------------KKVYGTKDANGAHISSLTNGLSFGEDAGIPIDL 120
           KVNLIHQDNMELY              KKVYGTKDANGAHISSLTNGLSFGEDAGIPIDL
Sbjct: 139 KVNLIHQDNMELYKKVNLIHQENLELQKKVYGTKDANGAHISSLTNGLSFGEDAGIPIDL 198

Query: 121 QLSQPQPQEHAAPERATKLG 127
           QLSQPQPQEHAAPERATKLG
Sbjct: 199 QLSQPQPQEHAAPERATKLG 218

[Close]

BLAST of CmoCh09G005890 vs. NCBI nr
Match: XP_022975995.1 (MADS-box transcription factor 23-like isoform X3 [Cucurbita maxima])

HSP 1 Score: 231.9 bits (590), Expect = 3.1e-57
Identity = 119/126 (94.44%), Postives = 122/126 (96.83%), Query Frame = 0


Query: 1   MLRQQLQSLHENHRQMMGEELTGLSVKDLQNLENQLEMSLRGIRMKKDKILMDEIQDLNR 60
           MLRQQLQSLHENHRQMMGEELTGLS KDLQNLENQLE+SLRGIRMKK+KILMDEIQDLNR
Sbjct: 95  MLRQQLQSLHENHRQMMGEELTGLSAKDLQNLENQLEISLRGIRMKKEKILMDEIQDLNR 154

Query: 61  KVNLIHQDNMELYKKVYGTKDANGAHISSLTNGLSFGEDAGIPIDLQLSQPQPQEHAAPE 120
           KVNLIHQDN ELYKKVYGTKDANGAHISSLTNGLS GEDAGIPIDLQLSQPQPQ+H APE
Sbjct: 155 KVNLIHQDNTELYKKVYGTKDANGAHISSLTNGLSVGEDAGIPIDLQLSQPQPQDHEAPE 214

Query: 121 RATKLG 127
           RATKLG
Sbjct: 215 RATKLG 220

[Close]

BLAST of CmoCh09G005890 vs. NCBI nr
Match: XP_023536068.1 (MADS-box transcription factor 23-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 225.3 bits (573), Expect = 2.9e-55
Identity = 121/140 (86.43%), Postives = 123/140 (87.86%), Query Frame = 0


Query: 1   MLRQQLQSLHENHRQMMGEELTGLSVKDLQNLENQLEMSLRGIRMKKDKILMDEIQDLNR 60
           MLRQQLQSLHENHRQMMGEELTGLSVKDLQNLENQLE+SLRGIRMKKDKILMDEIQDLNR
Sbjct: 95  MLRQQLQSLHENHRQMMGEELTGLSVKDLQNLENQLEISLRGIRMKKDKILMDEIQDLNR 154

Query: 61  KVNLIHQDNMELYK--------------KVYGTKDANGAHISSLTNGLSFGEDAGIPIDL 120
           KVNLIHQDN ELYK              KVYGTKDANGAHISSLTNGLS GEDAGIPIDL
Sbjct: 155 KVNLIHQDNTELYKKVNLIRQENLELHEKVYGTKDANGAHISSLTNGLSVGEDAGIPIDL 214

Query: 121 QLSQPQPQEHAAPERATKLG 127
           QLSQPQPQ+H APERATKLG
Sbjct: 215 QLSQPQPQDHEAPERATKLG 234

[Close]

BLAST of CmoCh09G005890 vs. TAIR 10
Match: AT3G57230.1 (AGAMOUS-like 16 )

HSP 1 Score: 119.8 bits (299), Expect = 1.6e-27
Identity = 73/142 (51.41%), Postives = 97/142 (68.31%), Query Frame = 0


Query: 1   MLRQQLQSLHENHRQMMGEELTGLSVKDLQNLENQLEMSLRGIRMKKDKILMDEIQDLNR 60
           +L++QL +L ENHRQMMGEEL+GLSV+ LQNLENQLE+SLRG+RMKKD++L++EIQ LNR
Sbjct: 95  ILKRQLHNLQENHRQMMGEELSGLSVEALQNLENQLELSLRGVRMKKDQMLIEEIQVLNR 154

Query: 61  KVNLIHQDNMELYKK-----------------VYGTKDANGAHISSLTNGLSFGEDAGIP 120
           + NL+HQ+N++L+KK                 V G K AN    S LTNGL   + +   
Sbjct: 155 EGNLVHQENLDLHKKVNLMHQQNMELHEKVSEVEGVKIAN--KNSLLTNGLDMRDTSNEH 214

Query: 121 IDLQLSQPQPQEHAAPERATKL 126
           + LQLSQPQ  +H    +A +L
Sbjct: 215 VHLQLSQPQ-HDHETHSKAIQL 233

[Close]

BLAST of CmoCh09G005890 vs. TAIR 10
Match: AT2G22630.1 (AGAMOUS-like 17 )

HSP 1 Score: 109.0 bits (271), Expect = 2.8e-24
Identity = 66/129 (51.16%), Postives = 87/129 (67.44%), Query Frame = 0


Query: 2   LRQQLQSLHENHRQMMGEELTGLSVKDLQNLENQLEMSLRGIRMKKDKILMDEIQDLNRK 61
           LRQ+L SL EN+RQ+ G EL GLSVK+LQN+E+QLEMSLRGIRMK+++IL +EI++L RK
Sbjct: 96  LRQELHSLQENYRQLTGVELNGLSVKELQNIESQLEMSLRGIRMKREQILTNEIKELTRK 155

Query: 62  VNL--------------IHQDNMELYKKVYGTKDANGAHISSLTNGLSFGEDAGIPIDLQ 117
            NL              IHQ+N+ELYKK YGT + NG     L + +    ++   + LQ
Sbjct: 156 RNLVHHENLELSRKVQRIHQENVELYKKAYGTSNTNGLGHHELVDAV---YESHAQVRLQ 215

[Close]

BLAST of CmoCh09G005890 vs. TAIR 10
Match: AT4G37940.1 (AGAMOUS-like 21 )

HSP 1 Score: 108.2 bits (269), Expect = 4.8e-24
Identity = 64/135 (47.41%), Postives = 94/135 (69.63%), Query Frame = 0


Query: 1   MLRQQLQSLHENHRQMMGEELTGLSVKDLQNLENQLEMSLRGIRMKKDKILMDEIQDLNR 60
           +LRQ+L +L ENHRQMMGE+L GLSV +L +LENQ+E+SLRGIRM+K+++L  EIQ+L++
Sbjct: 95  VLRQELHALQENHRQMMGEQLNGLSVNELNSLENQIEISLRGIRMRKEQLLTQEIQELSQ 154

Query: 61  KVNLIHQDNMELYKKVYGTKDAN-----GAHISSLTNGLSFGE------DAGIPIDLQLS 120
           K NLIHQ+N++L +KV      N      A++++ TNG +  E      ++   I LQLS
Sbjct: 155 KRNLIHQENLDLSRKVQRIHQENVELYKKAYMAN-TNGFTHREVAVADDESHTQIRLQLS 214

Query: 121 QPQPQEHAAPERATK 125
           QP+  ++  P RA +
Sbjct: 215 QPEHSDYDTPPRANE 228

[Close]

BLAST of CmoCh09G005890 vs. TAIR 10
Match: AT3G57230.2 (AGAMOUS-like 16 )

HSP 1 Score: 106.3 bits (264), Expect = 1.8e-23
Identity = 66/129 (51.16%), Postives = 86/129 (66.67%), Query Frame = 0


Query: 14  RQMMGEELTGLSVKDLQNLENQLEMSLRGIRMKKDKILMDEIQDLNRKVNLIHQDNMELY 73
           RQMMGEEL+GLSV+ LQNLENQLE+SLRG+RMKKD++L++EIQ LNR+ NL+HQ+N++L+
Sbjct: 107 RQMMGEELSGLSVEALQNLENQLELSLRGVRMKKDQMLIEEIQVLNREGNLVHQENLDLH 166

Query: 74  KK-----------------VYGTKDANGAHISSLTNGLSFGEDAGIPIDLQLSQPQPQEH 126
           KK                 V G K AN    S LTNGL   + +   + LQLSQPQ  +H
Sbjct: 167 KKVNLMHQQNMELHEKVSEVEGVKIAN--KNSLLTNGLDMRDTSNEHVHLQLSQPQ-HDH 226

[Close]

BLAST of CmoCh09G005890 vs. TAIR 10
Match: AT2G14210.1 (AGAMOUS-like 44 )

HSP 1 Score: 90.9 bits (224), Expect = 8.0e-19
Identity = 58/140 (41.43%), Postives = 89/140 (63.57%), Query Frame = 0


Query: 2   LRQQLQSLHENHRQMMGEELTGLSVKDLQNLENQLEMSLRGIRMKKDKILMDEIQDLNRK 61
           L+QQLQ L E HR+++GEEL+G++  DLQNLE+QL  SL+G+R+KKD+++ +EI++LNRK
Sbjct: 97  LQQQLQYLQECHRKLVGEELSGMNANDLQNLEDQLVTSLKGVRLKKDQLMTNEIRELNRK 156

Query: 62  --------------VNLIHQDNMELYKKVYGTKDANGAHISSLTNGLSFGEDAGIPIDLQ 121
                         V+++ ++N++L KKV+G    N    +S  + +S G     P  LQ
Sbjct: 157 GQIIQKENHELQNIVDIMRKENIKLQKKVHGR--TNAIEGNSSVDPISNGTTTYAPPQLQ 216

Query: 122 LSQPQPQEHAAPERATKLGL 128
           L Q QP   A  E++ +LGL
Sbjct: 217 LIQLQP---APREKSIRLGL 231

The following BLAST results are available for this feature:

BLAST of CmoCh09G005890 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A2RVQ5	2.3e-26	51.41	Agamous-like MADS-box protein AGL16 OS=Arabidopsis thaliana OX=3702 GN=AGL16 PE=...	[more]
Q6EP49	4.7e-24	47.52	MADS-box transcription factor 27 OS=Oryza sativa subsp. japonica OX=39947 GN=MAD...	[more]
Q38840	4.0e-23	51.16	Agamous-like MADS-box protein AGL17 OS=Arabidopsis thaliana OX=3702 GN=AGL17 PE=...	[more]
Q9SZJ6	6.8e-23	47.41	Agamous-like MADS-box protein AGL21 OS=Arabidopsis thaliana OX=3702 GN=AGL21 PE=...	[more]
Q6Z6W2	1.6e-19	44.52	MADS-box transcription factor 57 OS=Oryza sativa subsp. japonica OX=39947 GN=MAD...	[more]

BLAST of CmoCh09G005890 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FEC1	1.8e-58	90.00	MADS-box transcription factor 23-like isoform X1 OS=Cucurbita moschata OX=3662 G...	[more]
A0A6J1F8L0	1.8e-58	90.00	agamous-like MADS-box protein AGL16 isoform X2 OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A6J1IIA1	1.5e-57	94.44	MADS-box transcription factor 23-like isoform X3 OS=Cucurbita maxima OX=3661 GN=...	[more]
A0A6J1IM79	3.1e-55	85.11	MADS-box transcription factor 23-like isoform X2 OS=Cucurbita maxima OX=3661 GN=...	[more]
A0A6J1IKT5	1.2e-54	85.00	MADS-box transcription factor 23-like isoform X1 OS=Cucurbita maxima OX=3661 GN=...	[more]

BLAST of CmoCh09G005890 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6591705.1	2.2e-58	95.28	Agamous-like MADS-box protein AGL16, partial [Cucurbita argyrosperma subsp. soro...	[more]
XP_022936832.1	3.7e-58	90.00	MADS-box transcription factor 23-like isoform X1 [Cucurbita moschata] >XP_022936...	[more]
XP_022936836.1	3.7e-58	90.00	agamous-like MADS-box protein AGL16 isoform X2 [Cucurbita moschata]	[more]
XP_022975995.1	3.1e-57	94.44	MADS-box transcription factor 23-like isoform X3 [Cucurbita maxima]	[more]
XP_023536068.1	2.9e-55	86.43	MADS-box transcription factor 23-like isoform X2 [Cucurbita pepo subsp. pepo]	[more]

BLAST of CmoCh09G005890 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G57230.1	1.6e-27	51.41	AGAMOUS-like 16	[more]
AT2G22630.1	2.8e-24	51.16	AGAMOUS-like 17	[more]
AT4G37940.1	4.8e-24	47.41	AGAMOUS-like 21	[more]
AT3G57230.2	1.8e-23	51.16	AGAMOUS-like 16	[more]
AT2G14210.1	8.0e-19	41.43	AGAMOUS-like 44	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002487	Transcription factor, K-box	PFAM	PF01486	K-box	coord: 2..76 e-value: 3.6E-23 score: 81.6
IPR002487	Transcription factor, K-box	PROSITE	PS51297	K_BOX	coord: 1..82 score: 14.292275
None	No IPR available	PANTHER	PTHR48019:SF83	MADS-BOX TRANSCRIPTION FACTOR 23 ISOFORM X1	coord: 1..125
None	No IPR available	PANTHER	PTHR48019	SERUM RESPONSE FACTOR HOMOLOG	coord: 1..125

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh09G005890.1	CmoCh09G005890.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045944	positive regulation of transcription by RNA polymerase II
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0046983	protein dimerization activity
molecular_function	GO:0000977	RNA polymerase II transcription regulatory region sequence-specific DNA binding