CmoCh09G005640 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh09G005640
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	RNA-binding protein CP33, chloroplastic
Location	Cmo_Chr09: 2734284 .. 2742624 (-)
RNA-Seq Expression	CmoCh09G005640
Synteny	CmoCh09G005640

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTCTGGAGTTTTTTTTTTTTTTTGATTTCTAGGGTTTGTGCAATTTGGAATTTTTGAAGATCGCTAGGGTTTACAGGATTCGGTGATGGATCTTCCTTCGGAAGTTGAGAATTACATCAAGGAAACAATAGATCATGCATTAGGTCTCCCTGTGTCAGTGGAGACGCTGGAGTTGAAGCTTCGTGTCTCTCAGGATTCTCAGAGGCGGCTTGCTCATCATTGCGATGCTCTACAGTCTAAAATCAAAGAGAAAGAACAGTTGATTGAGCGCAGTAGGGTCCGTATGTGTTGTTGATTCATTATTCTTCATTTCCATTTCAAGTTTTTCGTTTTTCTTACGACATGGGTTTCATTTCGCTGTTGTAGGCTGAAGCGACAATGAACGCTCAAGCTTTGAAGAAATTTGTGGATGAGAACCGTAAACTGGCTACCGAGTGCTTATATCTTTCGGGTCAATGTGAGAAATGGGAGAGAGAGTGCTCTTTATATGATCATGACCGAGATGCATTGATGGAGTTCGGGAACGAGGCGGATCAGCGTGCAAGGGAGGCTGAGAATCGTGTTCATGAATTGGAGGAGGAGGTTAGACGGTTATCAGATGAACTGCAGTTCTTTAAACATGAACACGAGATGAAAAAGGTAATAGCATCTCCTCTGAAGCACTTGTGTGTCGTTAGTTTATTTACGCAAATGGCACAATGAATTGGCATTTTTTAGATAATTGGTGAGAATTTCTAAATTGCTGTACTCGAAAGAACGTTAAGTGCAACCGAGGACTATCTGCGGTATCGGCCATATGAAACTGGCAATTTGGATGAAGTAAAAGTGAGGCATGTAAATTTCCATTTCTGAGGAGTGCAGTGCAGCTCCTATTTGTGTGAATATAATACCTGTGGGATGTAGTTGCGTGTGTAAGATTGCATCCTAGTTTGTTTGGATATTTACAGGATTAATTGGTGGCCTTCCATTTTTAGATCGAGTGCTATGCTAAAATATTTATGAACACCTGGGGTATCATTTGCAATGCTTAGTCCCCCCTTTTATTGTTTTTTTGAGTTGAAGGGTCATTGTCATATAGTAATGATGTTGTGACTTAAGTGCTTTAATTAGTGGAATTGATATTAGGTGACTGTTTAAGCTGCTCGATGTCGTTCATTTTTATGAACAAAGCATTATGAAATGTTTATAACTGTAAATAATGGTCTTATTTGAGCTCAGAAATTGTTGTTTAGTTATTTCATTGAAATCAACTACTTTGGTCAATGGCGATATGTGATAGCTGTTCATAGTTTAGGAATTATATATTCAATTTCCTAACAAATTTTACTTGTTCCTTTTCACCTCCCTATATTGTCCGAACTTTTTAGTTGAACCCGCAAATCAGGATAAAGTTCTTCCATCAAAATTGATAAATGTGCATGTTTTACAATGATTCAGGTTGATTCGTCTTCTGATGGTAGAGATTTGGAGGATAACTTACTCGAGTTGGTTTTACCAACATGTAATTGTTATGATCGAGTTACATCTGCTCATGCATTTTTAGAAACAAGCATTGATCAAGATTCAAGCCAAAAGCTTATGAAAATGTGGAATTGGTGAGACTTTCTTTAATGATATTTTGTTTATTTCATTATGATGCAACATTACACCCAATAATTTATGGAACTGCAAAGAAATAATGGTAGAAAACAAAAAATGCAACTTAATATTACCCTTCTTTAGGTGTTTAGGTTGCAATTCTGTTAATCTATGTTGAAAATTTTCTCCTAGCTTAAAGCCTTCAACTCAAAAGACTCTATCACTAGCTGCATATGTGAAGGCCGTCGAGAAGGATTGTGAACATCTGAGGGTAAATCTACAAAGAGCTGAAGAAGAGGTGAGCAACGGCCTTTTTTCGGGAATGTTGCCTTTTTTTATGTGTTTTGAAACCTTATTTGGCCTCATTAGTAGCGTGCTTATGCTAGTTATATGCAGGTGAAATTGTTGTATGAAGATAATATGCTTCTTGACAAGGAGAACAAGAAGTTGCTGAAACGGTACCAGGAAGATAAAACCCAACATTCAGGTGATAAGCAGGCCAACAGTGAGTCTGCCGCCAAGGTGAGTCTCATTTATATTCTGTACTCAGAAGCTGTACTTTTCTGCTATCTTGTGGATGTTCATGAAAGAGGAAACCTCTCCCTGGCATACTCGTTCTGATATACTCGTTTTGAAACCTTGAGGAGAAGTCTAGAAAGGAAAGCTTAAAGAGAACAATATATGTTAGTAGTGGGACAATTGGTATTAGAACCAGGCATCGAGTGGTGTGCCAGCAAGGACGCCGGACCCCAAGGGGGTGGATTGTGGGATCCCACATCGGTTGGAGAGGGGAACAAAACATTCCTTATAAGGGTGTGGAAACCTCTCCCTAACAAATGCGTTTTAAAACCTTGAGGGGAAGCCTGAAAGGGAAAACCCAGAAGGGAAAACCCAGAAGGGAAAGTCCAAAGAGGATAATATCTATTAGCGGTGGGCTTGGAGTTGGGCTGTTACAACTTATTTATAACTTAATAAGTGTTATTAAATATTATAAGCTTGTTTTTGAAACTAACAACAAATGACTCATTTGATAACTATGTGTTTTTTAGTTTTTGAAAATTGTGCTCGTTTTATTTGTTACCAGTTGTTTTTAATCGAGATGTAACATCATCTTTGCCTTCTTATGCAGTCAAATAAGCGAAAATCATGCCCGAAAATCAGTATTCCGATTGAAGAAACGAATATTATTAATGAGGCTGATTCTACCCGACAACCTCTTTCACCTTTGCAACATAACTCACCCGACTCGAGAACACGGAAGAAGTAGTTGCAACCCAAGAAAAACACAGGTTATCCCCCCTCCATTTTCAAGCATAGACTGAGCTAACATAGCAAAATTTGAATATAGATACACTATAACATAATCTTTTAGTAGAGAGAAGTATGTTGTTGAGCTCTTCTAAATGAAAGAGCCTTTCTTTCACTTCTGTGTTTCCTTTGCTGCTCAATGTTATCAAGGAAACTCTCTTCTTGGTTTCGTGCCAATGTAGCTGAATTCTTGTCTGATTCCAATTGATACTTAGGCTTTGGATAAAATGTTGTTGCCATTTTGAAACTTGTTTGAATGCCCATACATCATATTTAGGAAGTTAAAAAGGTATAGAATGTTTGGAAAAGCGTGTCGTGATCTTGTTGTTAGGATGCTATTTCGGTGCATGGTCAAGTTCTTAAGGTATATGTATGTGTCTGAACTATCGTGGATCTACATTTTTCAGGAATTAGATGATTGTTGATGAAATAGCGTATAGGTCTGGATGGGATGATACGAAATAAAGTAATTGCCAAGAAACCGAGAAGTTATTAAGACAAAAAGGGTAAAACGGTAGAAAATATCTGAAAAAATATAAATTTAATTTCACCTTTTAAGCTTTTTATTTAACTTATATCCAATTACTTAGAAAACAAGAGAAGGATTCTCCACTGAATAAATAATAATTCCTGGTTTAATTTTTTATATATACGTTTAAATTATTCATTTTCAATGAAAAACTCCCATTTTAAAAGGAAAAAAAAATAATTTATTTTCTAGAAAAAAAAGAAAAATAATAAAAAATATATGGCTTAGTGCCGCACCCGCTAAAATATCCAGATATTCCATCCGAAACGTCGTCGTTTTAAGCCTTTTCTGAGCTCCCTTATCCAATATTAATAACCCACGGCGTAGCTCTGTGTTGCTTTTCAGACCAGGAGTGAGCAGAGTGCTGTGAGCGCCGGCCATGGCTCTGGTTCGTCTTCCTTGTTCTTCCTCCTCCTTATTCCTTCGTTCTAATCAACAGAATCTGGTGTTTATCTCGCCTCTCTCATGTCCGCAAAATCCATCTTATTCCAACAATGGCGATATCAAACTCTCTCTTTCGCGCTCTTCTTCCTCGCTTTTCTCTACTCCCCTCGGCCACAATCCTTTAGCTTCCATTAGGGCTAAGAGAACCAGAAAGTTTGTTTTCCAGTTGGCCTCGACCTCCCAAGACGATGCGGTTGCGAGCTCTTCTTCTGATGCTGAGGAATTTTCTCGAAACAGATTGCTTGCTCAGAACGTGCCTTGGGATTCTACTCCTGAGGATATTCGTTCTTTGTTTGAGAAATATGGTACTGTCGTAGACGTGGAGGTATGTAACTTCAGTTTATTTCTATTGCCATTTCTGTTTGACGCATTTGGTTTATTGCGGATTTATGATCGGTCTTTTTCTCTCAGCTTTCAATGTATAACAAGATCAGAAATAGGGGCTTGGCGTTTGTCACAATGGGATCACCTGAGGAGGCCCTTGCGGCAGTTAATAATCTCGAATCGTATGTAAGCAGGATGCCGTTTTTCTTAGCTTGATCATTTTTCGTTTGTCTCATTGTGTTCAAGTTCGTACCCGAGGCTTAGAACAGTGTTTACCTTTCACCATGGAAGAATAGTCGTAATAGCAATTGAATGCGTTTGAATTAAGGAATAGTTTGATTTGCTTGTGTGAGATGGAACGTGAGATCCCACTTCGGTTGGAGAGGGGAACAAACATTCTTTGTAAGGGTGTTGAAACCTCTCCACGCGTTTTAAAAACCGTGAGACTGACGGCAATACGTAACGGAAGCGGACAATATCCACTAGCGGTGGGCTTGGACTGTTACAAAAAGCGGACAATATCCACTAGCGGTGGGCTTGGACTGTTACAAAAAACGGACAATATTCACTAGCGGTGGGCTTGGACTGTTACAAATAGTATCAGAGCCCGGGTGGTGTGCCAGTGAGGACGATAACTCCCAAGGGGGTGGGTTGTGAGATCCCACATCTGTTGGAGAGGGAAACGAAACATTCCTTACAAGGGTGTGAAAACCTCTCTCTAATAGAAGTGTTTTAAAAATTGTGAGGTTGACGGCGATACGTAACGGGCCAAAGCGGACAATATCTACTAGCGATGGGCTTGGACTGTTACATGGAAAAATTGATGAACCGGAAGAACTCAATTATAAATTTGCATCCTGCTTGTGTCCAGTGTGTTGCAGTTTCTTTTAAATTTTGCTTCTTTAGTGCTTTTGAATATATTACAAGGGAACAAGTTATTGACTAAAATTTTTCAGTTCTCCTTGTCACTATGGGTTGAAGCAAAGTACATGGCCTTTCCATTCATTTCAAAACTTTTATGATGAATCTTCTGATGCATTTGGCTCTCACTCCCAATTATTGCAGGTGTTTATGGGCAATGCCCATGTCCTTTCGAACTCTTGTTGGCTTTTTATTGAATGAAATAGTTCACATGAATGCAGGAATTTGGGGGTCGTACCCTGAAGCTCAATTATGCCAAGGTTAAAAAAGAGAAACCCTCCCCTCCCGTGAAACCAAACCCCGTTACTTTTAATTTGTTTGTTGCAAATTTGCCATTTGATGCAAGAGCGAAGGACCTCAGGGAGTTCTTCGATTCGGGGAGTGGGAATGTAGTTTCTGCACAAATTATTTTTCACGAGAATCCAAGAAGGTCTTCTGGATATGGTTTTGTTGCATTCAAAACAAAGAAGGATGCCGAAGCAGCTATTTCCGAGTTTCAAGGGAAGGTAATTTCAGTATATTGCTACCACAATTTTTAAATGAATAGCCATAGAATCATTAAAATGTGAGTATCAGCATTCTTATGGTTCTTCATCTGCTGAAATGCAGAATTTCATGGGAAGATCACTTCGTGTTGCACGTAGTAAACAGTTTGTGAAACTTCCCTCAGAAGAGAAATCCCAATCTGAAGATACATCAACTGATGGCGTGGAGCTAGCCAGTGCTGCTGCTGAAGTTTAAAATTCAGAAGCCTCTCACTGGAGGAACTAAGGAGTTTGCTATCAACCTTTCTTTCTTTTTCTTGTTCTCTATCTTTTTTTGGAGGTAATGCTATCTAGTTATTCAATTAAGGAACACATCACTTTCCCTTTTCTTTTACCTATAAATCTCCTACCTCTAATGTTTAGATGATTCAAAGTTGGATACCCCAACAAAAAACGCTCATTAGATCATTTACTGTATCCTTTTCTCTATATGAAGTCTTAATGGTGATTTATCAATGCACGTTAATGTAATTGAGTTTAGCATTTAGTTAATGAATGAATACAAATGAACTAGGTTTTATAGTTGAATTGGCATCTTATGACTGTTTAGGTTCGAGGGGAGTTATTCCATTGCATAGTCACAGTATTGTATTGATTCAAGAACAAAGGACAATCAGTGCAATTTGATCCATGCGTGTTTGCTTTACATAGATAGGTGGGTGGAGAAAGCAATCCCAAAATGAATTTTTGTTCATGTGTACTATATTGCATGATCTCAGCATTGTACTTGCATTCACATTCATGTGTACTATATTTCATAATTGAGAACATTGAAGGACAACTTGTACAATTTGATTCTTTTTCTTTAAATTGACAAGTGTTTGGTGGGGTGGGGAGGAACAATTCCTCCATCTTTTCTCATTCATTTGTGCTATATTTTGCATAATCACAGGGTTATACTGAATCGATAACATTGGAGAACAGTCTGCCATTTGTTTGTTTAGATGATTCATTTCAATGCTTTAGGAAATCTAGTGCTTTTGAGTTGATGCATTTGAGTGAACATTTGTTGATTCATATTTCATGAATGCTGGCTATCCCTTCTGTGTGAAGATGCAATGGATAGATATTATCCTCAAATGCAGTGTTGATTGTTTGTTCTTGTTCAAGCCATAATAAGTTTGAACTTGTTCATTAGAGCTTCATATATTCTTCATATTACTATATTGTTTCTTTCTCTTCCCCTTTTTTCTATGAAGGTGGCATGCGGGTCGGGTTGGAGTTATGGCGTAAGTTGCGTTCGACTGTGTTTTCAAGCCTGGTTATAATTTCTTTCTTTATGTCTCTGTCATTCTCTCAAATACTCTTTAGTACCAAACCTTTATATGATTCATTCTGAGCTTTGGCGAATACTTGCTTAGACATGTTGTTTTCCTTTTCATTTAAGTTGTCTTCTGTGTTCTAGTGGAGTCCTTACCTCTCAAGCTATGGTTCTAGTTGGGTTCATCATCTTGAGCTAGGAAAGGTTGATTGTCCTTTGAATAGATGTTTTTCCATCTTGTTCAACACCAAGGTTAGAACATTCTTGTCTCGACTTCTCAGTGAAAAGAAGACGAACGATCGCCTATGAATTAGGTACCAATCCGATTCCATAGAATTTCAAGTAAATAGCATCAAAGGAATACCATTTCCGTTCCCATTGATTTCATTTTGATAAAATTGGAACGATATAGAGAAGATTAGCATGGTCCTGTACAAGGATGACATGAACAAATCGAGAAATGGTATGAGAGCTAATTTTTAGGTGGTGTGCCAGCGAGGACGCTGGCCTCCTAAGGGGAGTGGTTAGTTGGAGATAGGAACAAAACATTCCTTATAAGTGTGTGGAAACCTCTCCCTAGTAGACGTATTTTAAAAACTGTGAGGTTGACGGCAGTACGTAACGGGCCAAAACAGACAATATCTATTAGCGGTAGGCTTAGACTGTTGCAAATGCTCATTTCGATTCATTTTTCATTTTGATTCCGAGCAATCGACGATTGATGCGTTGCCCAAATCTGGCATGGCATTGGGCAGTTTTGCTGGGGGTTCCAGGCAGGGAGTTGTGGAGAATAACAGTGGTGGGGTGGTTGGGCTTGTTTGTGTAGGGAAGGGGCCCCATGAAAGCCCCCAACAACTCACGTGGAATTATGTCTACGGCAGTGCACAAATTAGGGATGGTAGAGCCAAACCACCACCCAGATTTGTTGATTTAGACAAAATAATGCACACACACAGTTCATCTTCCATGTGAGTCCTTTTTTACTTTTTGACTCTTCCTGGTTTGGTGGAATGTTATATCATAACCAACCACATTTCCATTCATGGACTAAGGTTTAAAGTTCATCAAGATATCTATCTTATAAGGGTTCGATTTGTCACAATTTGGTTACTTTTAATTTCTCTCTTCGTTATTTGTATCTTTGCAGATAAGAAAACGAGCTAAATCAGGATTAGTCGGCAAGTTTTCTAGTTGGGACTGTGACAATCTGTCAATAAGTTCTCCTCTCCTCATTCTTAGTTTACAAATATTTTAAGTTAAATTAATATAAACATTTCCAGACTTCTGAATTCTGCATTTTTAATAATACTTGAGTACTTTCATCAGGGTTTTTGTTTAAAAAATGTCATTGAACTTTCAAAAGTTTTATTATGTAACCGTCCAAGCCCATTGCTAGTAGATATTGTTTGCTTTAGCTTGTATTGTCGTCAG

mRNA sequence

TTCTGGAGTTTTTTTTTTTTTTTGATTTCTAGGGTTTGTGCAATTTGGAATTTTTGAAGATCGCTAGGGTTTACAGGATTCGGTGATGGATCTTCCTTCGGAAGTTGAGAATTACATCAAGGAAACAATAGATCATGCATTAGGTCTCCCTGTGTCAGTGGAGACGCTGGAGTTGAAGCTTCGTGTCTCTCAGGATTCTCAGAGGCGGCTTGCTCATCATTGCGATGCTCTACAGTCTAAAATCAAAGAGAAAGAACAGTTGATTGAGCGCAGTAGGGCTGAAGCGACAATGAACGCTCAAGCTTTGAAGAAATTTGTGGATGAGAACCGTAAACTGGCTACCGAGTGCTTATATCTTTCGGGTCAATGTGAGAAATGGGAGAGAGAGTGCTCTTTATATGATCATGACCGAGATGCATTGATGGAGTTCGGGAACGAGGCGGATCAGCGTGCAAGGGAGGCTGAGAATCGTGTTCATGAATTGGAGGAGGAGGTTAGACGGTTATCAGATGAACTGCAGTTCTTTAAACATGAACACGAGATGAAAAAGGTAATAGCATCTCCTCTGAAGCACTTGTGTGTCGTTGATTCGTCTTCTGATGGTAGAGATTTGGAGGATAACTTACTCGAGTTGGTTTTACCAACATGTAATTGTTATGATCGAGTTACATCTGCTCATGCATTTTTAGAAACAAGCATTGATCAAGATTCAAGCCAAAAGCTTATGAAAATGTGGAATTGCTTAAAGCCTTCAACTCAAAAGACTCTATCACTAGCTGCATATGTGAAGGCCGTCGAGAAGGATTGTGAACATCTGAGGGTAAATCTACAAAGAGCTGAAGAAGAGCGTGCTTATGCTAGTTATATGCAGGTGAAATTGTTGTATGAAGATAATATGCTTCTTGACAAGGAGAACAAGAAGTTGCTGAAACGGTACCAGGAAGATAAAACCCAACATTCAGGTGATAAGCAGGCCAACAGTGAGTCTGCCGCCAAGACCAGGAGTGAGCAGAGTGCTGTGAGCGCCGGCCATGGCTCTGCTTCCATTAGGGCTAAGAGAACCAGAAAGTTTGTTTTCCAGTTGGCCTCGACCTCCCAAGACGATGCGGTTGCGAGCTCTTCTTCTGATGCTGAGGAATTTTCTCGAAACAGATTGCTTGCTCAGAACGTGCCTTGGGATTCTACTCCTGAGGATATTCGTTCTTTGTTTGAGAAATATGGTACTGTCGTAGACGTGGAGCTTTCAATGTATAACAAGATCAGAAATAGGGGCTTGGCGTTTGTCACAATGGGATCACCTGAGGAGGCCCTTGCGGCAGTTAATAATCTCGAATCGTATCTCAATTATGCCAAGGTTAAAAAAGAGAAACCCTCCCCTCCCGTGAAACCAAACCCCGTTACTTTTAATTTGTTTGTTGCAAATTTGCCATTTGATGCAAGAGCGAAGGACCTCAGGGAGTTCTTCGATTCGGGGAGTGGGAATGTAGTTTCTGCACAAATTATTTTTCACGAGAATCCAAGAAGGTCTTCTGGATATGGTTTTGTTGCATTCAAAACAAAGAAGGATGCCGAAGCAGCTATTTCCGAGTTTCAAGGGAAGAATTTCATGGGAAGATCACTTCGTGTTGCACGTAGTAAACAGTTTGTGAAACTTCCCTCAGAAGAGAAATCCCAATCTGAAGATACATCAACTGATGGCGTGGAGCTAGCCAGTGCTGCTGCTGAAGGTTATACTGAATCGATAACATTGGAGAACAGTCTGCCATTTGTTTGTTTAGATGATTCATTTCAATGCTTTAGGAAATCTAGTGCTTTTGAGTACCAATCCGATTCCATAGAATTTCAATTCATCTTCCATATAAGAAAACGAGCTAAATCAGGATTAGTCGGCAAGTTTTCTAGTTGGGACTGTGACAATCTGTCAATAAGTTCTCCTCTCCTCATTCTTAGTTTACAAATATTTTAAGTTAAATTAATATAAACATTTCCAGACTTCTGAATTCTGCATTTTTAATAATACTTGAGTACTTTCATCAGGGTTTTTGTTTAAAAAATGTCATTGAACTTTCAAAAGTTTTATTATGTAACCGTCCAAGCCCATTGCTAGTAGATATTGTTTGCTTTAGCTTGTATTGTCGTCAG

Coding sequence (CDS)

ATGGATCTTCCTTCGGAAGTTGAGAATTACATCAAGGAAACAATAGATCATGCATTAGGTCTCCCTGTGTCAGTGGAGACGCTGGAGTTGAAGCTTCGTGTCTCTCAGGATTCTCAGAGGCGGCTTGCTCATCATTGCGATGCTCTACAGTCTAAAATCAAAGAGAAAGAACAGTTGATTGAGCGCAGTAGGGCTGAAGCGACAATGAACGCTCAAGCTTTGAAGAAATTTGTGGATGAGAACCGTAAACTGGCTACCGAGTGCTTATATCTTTCGGGTCAATGTGAGAAATGGGAGAGAGAGTGCTCTTTATATGATCATGACCGAGATGCATTGATGGAGTTCGGGAACGAGGCGGATCAGCGTGCAAGGGAGGCTGAGAATCGTGTTCATGAATTGGAGGAGGAGGTTAGACGGTTATCAGATGAACTGCAGTTCTTTAAACATGAACACGAGATGAAAAAGGTAATAGCATCTCCTCTGAAGCACTTGTGTGTCGTTGATTCGTCTTCTGATGGTAGAGATTTGGAGGATAACTTACTCGAGTTGGTTTTACCAACATGTAATTGTTATGATCGAGTTACATCTGCTCATGCATTTTTAGAAACAAGCATTGATCAAGATTCAAGCCAAAAGCTTATGAAAATGTGGAATTGCTTAAAGCCTTCAACTCAAAAGACTCTATCACTAGCTGCATATGTGAAGGCCGTCGAGAAGGATTGTGAACATCTGAGGGTAAATCTACAAAGAGCTGAAGAAGAGCGTGCTTATGCTAGTTATATGCAGGTGAAATTGTTGTATGAAGATAATATGCTTCTTGACAAGGAGAACAAGAAGTTGCTGAAACGGTACCAGGAAGATAAAACCCAACATTCAGGTGATAAGCAGGCCAACAGTGAGTCTGCCGCCAAGACCAGGAGTGAGCAGAGTGCTGTGAGCGCCGGCCATGGCTCTGCTTCCATTAGGGCTAAGAGAACCAGAAAGTTTGTTTTCCAGTTGGCCTCGACCTCCCAAGACGATGCGGTTGCGAGCTCTTCTTCTGATGCTGAGGAATTTTCTCGAAACAGATTGCTTGCTCAGAACGTGCCTTGGGATTCTACTCCTGAGGATATTCGTTCTTTGTTTGAGAAATATGGTACTGTCGTAGACGTGGAGCTTTCAATGTATAACAAGATCAGAAATAGGGGCTTGGCGTTTGTCACAATGGGATCACCTGAGGAGGCCCTTGCGGCAGTTAATAATCTCGAATCGTATCTCAATTATGCCAAGGTTAAAAAAGAGAAACCCTCCCCTCCCGTGAAACCAAACCCCGTTACTTTTAATTTGTTTGTTGCAAATTTGCCATTTGATGCAAGAGCGAAGGACCTCAGGGAGTTCTTCGATTCGGGGAGTGGGAATGTAGTTTCTGCACAAATTATTTTTCACGAGAATCCAAGAAGGTCTTCTGGATATGGTTTTGTTGCATTCAAAACAAAGAAGGATGCCGAAGCAGCTATTTCCGAGTTTCAAGGGAAGAATTTCATGGGAAGATCACTTCGTGTTGCACGTAGTAAACAGTTTGTGAAACTTCCCTCAGAAGAGAAATCCCAATCTGAAGATACATCAACTGATGGCGTGGAGCTAGCCAGTGCTGCTGCTGAAGGTTATACTGAATCGATAACATTGGAGAACAGTCTGCCATTTGTTTGTTTAGATGATTCATTTCAATGCTTTAGGAAATCTAGTGCTTTTGAGTACCAATCCGATTCCATAGAATTTCAATTCATCTTCCATATAAGAAAACGAGCTAAATCAGGATTAGTCGGCAAGTTTTCTAGTTGGGACTGTGACAATCTGTCAATAAGTTCTCCTCTCCTCATTCTTAGTTTACAAATATTTTAA

Protein sequence

MDLPSEVENYIKETIDHALGLPVSVETLELKLRVSQDSQRRLAHHCDALQSKIKEKEQLIERSRAEATMNAQALKKFVDENRKLATECLYLSGQCEKWERECSLYDHDRDALMEFGNEADQRAREAENRVHELEEEVRRLSDELQFFKHEHEMKKVIASPLKHLCVVDSSSDGRDLEDNLLELVLPTCNCYDRVTSAHAFLETSIDQDSSQKLMKMWNCLKPSTQKTLSLAAYVKAVEKDCEHLRVNLQRAEEERAYASYMQVKLLYEDNMLLDKENKKLLKRYQEDKTQHSGDKQANSESAAKTRSEQSAVSAGHGSASIRAKRTRKFVFQLASTSQDDAVASSSSDAEEFSRNRLLAQNVPWDSTPEDIRSLFEKYGTVVDVELSMYNKIRNRGLAFVTMGSPEEALAAVNNLESYLNYAKVKKEKPSPPVKPNPVTFNLFVANLPFDARAKDLREFFDSGSGNVVSAQIIFHENPRRSSGYGFVAFKTKKDAEAAISEFQGKNFMGRSLRVARSKQFVKLPSEEKSQSEDTSTDGVELASAAAEGYTESITLENSLPFVCLDDSFQCFRKSSAFEYQSDSIEFQFIFHIRKRAKSGLVGKFSSWDCDNLSISSPLLILSLQIF

Homology

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BLAST of CmoCh09G005640 vs. ExPASy Swiss-Prot
Match: Q39061 (RNA-binding protein CP33, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP33 PE=2 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 1.6e-16
Identity = 69/245 (28.16%), Postives = 122/245 (49.80%), Query Frame = 0


Query: 334 ASTSQDDAVASSSSDAEE------------FSRNRLLAQNVPWDSTPEDIRSLFEKYGTV 393
           AS  +++ V     + EE                RL   N+P+  T  ++  +F + GTV
Sbjct: 83  ASVEEEEEVEEEGDEGEEEVEEEKQTTQASGEEGRLYVGNLPYTITSSELSQIFGEAGTV 142

Query: 394 VDVELSMYNKI--RNRGLAFVTMGSPEEALAAVNNL-ESYLNYAKVKKEKPSPP------ 453
           VDV++ +Y+K+  R+RG  FVTMGS EEA  A+     S +    VK   P  P      
Sbjct: 143 VDVQI-VYDKVTDRSRGFGFVTMGSIEEAKEAMQMFNSSQIGGRTVKVNFPEVPRGGENE 202

Query: 454 -----VKPNPVTF-----NLFVANLPFDARAKDLREFFDSGSGNVVSAQIIFHENPRRSS 513
                ++ N  ++      ++  NL ++  ++ L++ F    G V+ A++I+  N  RS 
Sbjct: 203 VMRTKIRDNNRSYVDSPHKVYAGNLGWNLTSQGLKDAFGDQPG-VLGAKVIYERNTGRSR 262

Query: 514 GYGFVAFKTKKDAEAAISEFQGKNFMGRSLRV----ARSKQFVKLPSEEKSQSEDTSTDG 544
           G+GF++F++ ++ ++A++   G    GR+LR+     R K  V  PS E+ ++E+ S + 
Sbjct: 263 GFGFISFESAENVQSALATMNGVEVEGRALRLNLASEREKPTVSPPSVEEGETEEASLES 322

[Close]

BLAST of CmoCh09G005640 vs. ExPASy Swiss-Prot
Match: P19683 (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=1 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 3.6e-16
Identity = 61/200 (30.50%), Postives = 101/200 (50.50%), Query Frame = 0


Query: 329 FVFQLASTSQDDAVASSSSDAEEFSR----NRLLAQNVPWDSTPEDIRSLFEKYGTVVDV 388
           FV  +    + D V  +  + EEF       +L   N+P+D   E +  LFE+ G VV++
Sbjct: 107 FVEAVGDAGESDEV-EADEEEEEFQEPPEDAKLFVGNLPYDVDSEGLARLFEQAG-VVEI 166

Query: 389 ELSMYNK--IRNRGLAFVTMGSPEEALAAVNNLESY--------LNYAKVKKEKPSPPVK 448
              +YN+   ++RG  FVTM + EEA  AV     Y        +N A  + E+P  P +
Sbjct: 167 AEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEMYNRYDVNGRLLTVNKAARRGERPERPPR 226

Query: 449 PNPVTFNLFVANLPFDARAKDLREFFDSGSGNVVSAQIIFHENPRRSSGYGFVAFKTKKD 508
               ++ ++V N+P+      L + F S  G VVSA++++     RS G+GFV   ++ +
Sbjct: 227 TFEQSYRIYVGNIPWGIDDARLEQLF-SEHGKVVSARVVYDRETGRSRGFGFVTMASEAE 286

Query: 509 AEAAISEFQGKNFMGRSLRV 515
              AI+   G++  GR++RV
Sbjct: 287 MSDAIANLDGQSLDGRTIRV 303

[Close]

BLAST of CmoCh09G005640 vs. ExPASy Swiss-Prot
Match: Q9FGS0 (RNA-binding protein CP31B, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP31B PE=1 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 8.0e-16
Identity = 53/169 (31.36%), Postives = 86/169 (50.89%), Query Frame = 0


Query: 356 RLLAQNVPWDSTPEDIRSLFEKYGTVVDVELSMYNK--IRNRGLAFVTMGSPEEALAAVN 415
           +L   N+P+D   + +  LFE+ GT V++   +YN+   ++RG  FVTM + EEA  AV 
Sbjct: 114 KLFVGNLPYDVDSQALAMLFEQAGT-VEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAVE 173

Query: 416 NLESY--------LNYAKVKKEKPSPPVKPNPVTFNLFVANLPFDARAKDLREFFDSGSG 475
              S+        +N A  +  +P    +     F ++V NLP+D  +  L   F S  G
Sbjct: 174 KFNSFEVNGRRLTVNRAAPRGSRPERQPRVYDAAFRIYVGNLPWDVDSGRLERLF-SEHG 233

Query: 476 NVVSAQIIFHENPRRSSGYGFVAFKTKKDAEAAISEFQGKNFMGRSLRV 515
            VV A+++      RS G+GFV    + +   AI+   G+N  GR+++V
Sbjct: 234 KVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAALDGQNLEGRAIKV 280

[Close]

BLAST of CmoCh09G005640 vs. ExPASy Swiss-Prot
Match: P19682 (28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=1 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 1.0e-15
Identity = 58/188 (30.85%), Postives = 98/188 (52.13%), Query Frame = 0


Query: 343 ASSSSDAEEFSRN-RLLAQNVPWDSTPEDIRSLFEKYGTVVDVELSMYNK--IRNRGLAF 402
           A  + + +E S + +L   N+P+D   E +  LF++ G VV++   +YN+   R+RG  F
Sbjct: 84  AGETEEYQEPSEDAKLFVGNLPYDIDSEGLAQLFQQAG-VVEIAEVIYNRETDRSRGFGF 143

Query: 403 VTMGSPEEALAAVNNLESY--------LNYAKVKKEKPSPPVKPNPVTFNLFVANLPFDA 462
           VTM + EEA  AV     Y        +N A  +  +P    +    T+ ++V N+P+D 
Sbjct: 144 VTMSTVEEADKAVELYSQYDLNGRLLTVNKAAPRGSRPERAPRTFQPTYRIYVGNIPWDI 203

Query: 463 RAKDLREFFDSGSGNVVSAQIIFHENPRRSSGYGFVAFKTKKDAEAAISEFQGKNFMGRS 520
               L + F S  G VVSA+++F     RS G+GFV   ++ +   AI+   G+   GR+
Sbjct: 204 DDARLEQVF-SEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSEAIANLDGQTLDGRT 263

[Close]

BLAST of CmoCh09G005640 vs. ExPASy Swiss-Prot
Match: Q04836 (31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP31A PE=1 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 1.8e-15
Identity = 58/186 (31.18%), Postives = 90/186 (48.39%), Query Frame = 0


Query: 339 DDAVASSSSDAEEFSRNRLLAQNVPWDSTPEDIRSLFEKYGTVVDVELSMYNK--IRNRG 398
           + AV+  +   E     +L   N+ +D   + +  LFE+ GTV   E+ +YN+   ++RG
Sbjct: 134 EGAVSERAEFPEPSEEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEV-IYNRETDQSRG 193

Query: 399 LAFVTMGSPEEALAAVNNLESY--------LNYAKVKKEKPSPPVKPNPVTFNLFVANLP 458
             FVTM S +EA  AV     Y        +N A  +  +P    +     F ++V NLP
Sbjct: 194 FGFVTMSSVDEAETAVEKFNRYDLNGRLLTVNKAAPRGSRPERAPRVYEPAFRVYVGNLP 253

Query: 459 FDARAKDLREFFDSGSGNVVSAQIIFHENPRRSSGYGFVAFKTKKDAEAAISEFQGKNFM 515
           +D     L + F S  G VV A++++     RS G+GFV      +   AIS   G+N  
Sbjct: 254 WDVDNGRLEQLF-SEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLE 313

[Close]

BLAST of CmoCh09G005640 vs. ExPASy TrEMBL
Match: A0A2N9IYL3 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS58309 PE=4 SV=1)

HSP 1 Score: 577.8 bits (1488), Expect = 5.5e-161
Identity = 331/600 (55.17%), Postives = 420/600 (70.00%), Query Frame = 0


Query: 1   MDLPSEVENYIKETIDHALGLPVSVETLELKLRVSQDSQRRLAHHCDALQSKIKEKEQLI 60
           MDLP E+++YIK++IDH+LGLPVS +TLELKL VSQ++QRRL   C +LQ K++EKE LI
Sbjct: 1   MDLPQEIDDYIKDSIDHSLGLPVSTQTLELKLSVSQEAQRRLRSRCLSLQHKLQEKEDLI 60

Query: 61  ERSRAEATMNAQALKKFVDENRKLATECLYLSGQCEKWERECSLYDHDRDALMEFGNEAD 120
           +R RAE++MNAQALKKFV+EN+KLA EC  L  QC KWERECSLYDHDR+ALM+FGNEAD
Sbjct: 61  DRIRAESSMNAQALKKFVEENQKLALECANLLSQCNKWERECSLYDHDREALMDFGNEAD 120

Query: 121 QRAREAENRVHELEEEVRRLSDELQFFKHEHEMKKVIASPLKHLCVVDSSSDGRDLEDNL 180
           +RA+EAE RVHELEEEVRRLS+ELQF+K E EM+            V+SS++   +E++L
Sbjct: 121 ERAKEAEIRVHELEEEVRRLSEELQFYKCECEMR-----------AVESSAEDTIIENSL 180

Query: 181 LELVLPTCNCYDRVTSAHAFLETSIDQDSSQKLMKMWNCLKPSTQKTLSLAAYVKAVEKD 240
           LE VL T    D + SAHAFLE +   +S Q+L+KMWN L+PSTQK LSLAA VK +EKD
Sbjct: 181 LESVLTTLISKDDLASAHAFLEANSSHESCQRLLKMWNQLRPSTQKVLSLAAEVKTLEKD 240

Query: 241 CEHLRVNLQRAEEERAYASYMQVKLLYEDNMLLDKENKKLLKRYQEDKTQH-SGDKQANS 300
            +HLR+NL RAEEE        VKLL+E+N +LD+ENK+LL++YQ++++ H SG K   +
Sbjct: 241 KDHLRINLNRAEEE--------VKLLFEENNILDEENKRLLRQYQKERSHHGSGGKHTGT 300

Query: 301 ESAAKTRSEQS-------------------------------------AVSAGHGSASIR 360
            SA   + + S                                      +    G +S+ 
Sbjct: 301 ASAKSNKRKSSPKMSSPLEKKLDFNDLDLARLPLSPLRNNSSPDSKLHKLEGKEGLSSVL 360

Query: 361 ---AKRTRKFVFQLASTSQDDAVASS--SSDAEEFSRNRLLAQNVPWDSTPEDIRSLFEK 420
                 T    F+  +T        +     AEEF+RNRL+AQNVPW+ T ED+R+LFEK
Sbjct: 361 KDCLDNTNLMKFKRTATKGPVMATGNLLEPQAEEFTRNRLIAQNVPWNCTTEDVRALFEK 420

Query: 421 YGTVVDVELSMYNKIRNRGLAFVTMGSPEEALAAVNNLESY--------LNYAKVKKEKP 480
           +GTV+DVELSM+NK RNRGLAFVTMGSPE+AL A+NNLESY        +NYA+ +K+K 
Sbjct: 421 HGTVIDVELSMHNKTRNRGLAFVTMGSPEDALTALNNLESYEFEGRTLKINYARARKKKS 480

Query: 481 --SPPVKPNPVTFNLFVANLPFDARAKDLREFFDSGSGNVVSAQIIFHENPRRSSGYGFV 540
             S P +P P+TFNLFVANLPF+AR+KDLREFF SGS  VVSA +IFHENPR+SSGYGFV
Sbjct: 481 PHSRPAQPKPLTFNLFVANLPFEARSKDLREFFGSGSSTVVSAHVIFHENPRKSSGYGFV 540

Query: 541 AFKTKKDAEAAISEFQGKNFMGRSLRVARSKQFVKLPSEEKSQSEDTSTDGVELASAAAE 548
           AFKTK+DA+ A+S FQGK  MGR +RVARS+QFVKLP EE +QS D S   +EL ++A +
Sbjct: 541 AFKTKRDADEALSAFQGKILMGRPIRVARSRQFVKLPVEESAQSGDAS---IELNTSAEQ 578

[Close]

BLAST of CmoCh09G005640 vs. ExPASy TrEMBL
Match: W9REI7 (28 kDa ribonucleoprotein OS=Morus notabilis OX=981085 GN=L484_013185 PE=4 SV=1)

HSP 1 Score: 547.4 bits (1409), Expect = 8.0e-152
Identity = 321/616 (52.11%), Postives = 412/616 (66.88%), Query Frame = 0


Query: 1   MDLPSEVENYIKETIDHALGLPVSVETLELKLRVSQDSQRRLAHHCDALQSKIKEKEQLI 60
           M+LP E+++YIKE+I H LGLPVS  TLELKL+ S+++Q RL   C  L S++KEK+Q I
Sbjct: 1   MELPQEIDDYIKESIQHTLGLPVSRSTLELKLQASEEAQSRLRDQCLLLHSRLKEKDQAI 60

Query: 61  ERSRAEATMNAQALKKFVDENRKLATECLYLSGQCEKWERECSLYDHDRDALMEFGNEAD 120
           ER+RAE++M+A ALKKFV+EN+KLA+EC +L  QC K E+ECSLYD+DR+ALM+FGNEAD
Sbjct: 61  ERARAESSMSALALKKFVEENQKLASECAHLLNQCNKLEKECSLYDNDREALMDFGNEAD 120

Query: 121 QRAREAENRVHELEEEVRRLSDELQFFKHEHEMKKVIASPLKHLCVVDSSSDGRDLEDNL 180
           QRA+EAE RV ELEEEVR LSDELQF+K + E            C+VDSS  G   +D+L
Sbjct: 121 QRAKEAELRVQELEEEVRGLSDELQFYKRQCE-----------ACMVDSSLQGVTTQDSL 180

Query: 181 LELVLPTCNCYDRVTSAHAFLETSIDQDSSQKLMKMWNCLKPSTQKTLSLAAYVKAVEKD 240
           LE VL T    D     HAFLE +   +S  +L++MWN LKPSTQK LSLAA  KA+EKD
Sbjct: 181 LESVLATLISGDDAVPGHAFLEANSSHESCLRLLEMWNFLKPSTQKVLSLAAEFKALEKD 240

Query: 241 CEHLRVNLQRAEEERAYASYMQVKLLYEDNMLLDKENKKLLKRYQEDKTQHSGDKQANSE 300
            EHLR NL RAEEE        VKLL+E+N +LD+ENKKLL ++ +++ QH    +  S 
Sbjct: 241 KEHLRTNLYRAEEE--------VKLLFEENNMLDEENKKLLMKFNKERNQHGSSGKHASS 300

Query: 301 SAAKTRSEQSA------------------------------------------------- 360
           + AK+   +S+                                                 
Sbjct: 301 APAKSNKRKSSSKTSSLIEKKIDFSEADMPRPPLSPLRCEEQTHFTPLCSLQNPHKNTLS 360

Query: 361 ----------VSAGHGSAS---IRAKRTRKFVFQLASTSQDDAVAS--------SSSDAE 420
                     +S  H + S   I+++R    V   +ST+Q+ A+ S        + S+ E
Sbjct: 361 VSCSLSCVFPLSHTHNAPSSRLIKSRRDGTLVSHFSSTAQEQALESPPASESGETGSETE 420

Query: 421 EFSRNRLLAQNVPWDSTPEDIRSLFEKYGTVVDVELSMYNKIRNRGLAFVTMGSPEEALA 480
           E  +NRL AQNVPW+ TPEDIR+LFEKYGTV DVELSM+NK RNRGLAFVTMGSPEEALA
Sbjct: 421 EVLKNRLYAQNVPWNCTPEDIRALFEKYGTVEDVELSMFNKTRNRGLAFVTMGSPEEALA 480

Query: 481 AVNNLESY--------LNYAKVKKEKPSPPVKPNP-VTFNLFVANLPFDARAKDLREFFD 538
           A+NNL+SY        ++YA+++K+K + P++P P VTFNLFVANL F+ARAKDLREFF+
Sbjct: 481 ALNNLQSYELDGRVIKIDYARLRKKKVTTPMQPKPEVTFNLFVANLSFEARAKDLREFFN 540

[Close]

BLAST of CmoCh09G005640 vs. ExPASy TrEMBL
Match: A0A6J1FGH5 (uncharacterized protein LOC111443694 OS=Cucurbita moschata OX=3662 GN=LOC111443694 PE=4 SV=1)

HSP 1 Score: 536.2 bits (1380), Expect = 1.8e-148
Identity = 286/310 (92.26%), Postives = 288/310 (92.90%), Query Frame = 0


Query: 1   MDLPSEVENYIKETIDHALGLPVSVETLELKLRVSQDSQRRLAHHCDALQSKIKEKEQLI 60
           MDLPSEVENYIKETIDHALGLPVSVETLELKLRVSQDSQRRLAHHCDALQSKIKEKEQLI
Sbjct: 1   MDLPSEVENYIKETIDHALGLPVSVETLELKLRVSQDSQRRLAHHCDALQSKIKEKEQLI 60

Query: 61  ERSRAEATMNAQALKKFVDENRKLATECLYLSGQCEKWERECSLYDHDRDALMEFGNEAD 120
           ERSRAEATMNAQALKKFVDENRKLATECLYLSGQCEKWERECSLYDHDRDALMEFGNEAD
Sbjct: 61  ERSRAEATMNAQALKKFVDENRKLATECLYLSGQCEKWERECSLYDHDRDALMEFGNEAD 120

Query: 121 QRAREAENRVHELEEEVRRLSDELQFFKHEHEMKKVIASPLKHLCVVDSSSDGRDLEDNL 180
           QRAREAENRVHELEEEVRRLSDELQFFKHEHEMKK           VDSSSDGRDLEDNL
Sbjct: 121 QRAREAENRVHELEEEVRRLSDELQFFKHEHEMKK-----------VDSSSDGRDLEDNL 180

Query: 181 LELVLPTCNCYDRVTSAHAFLETSIDQDSSQKLMKMWNCLKPSTQKTLSLAAYVKAVEKD 240
           LELVLPTCNCYDRVTSAHAFLETSIDQDSSQKLMKMWNCLKPSTQKTLSLAAYVKAVEKD
Sbjct: 181 LELVLPTCNCYDRVTSAHAFLETSIDQDSSQKLMKMWNCLKPSTQKTLSLAAYVKAVEKD 240

Query: 241 CEHLRVNLQRAEEERAYASYMQVKLLYEDNMLLDKENKKLLKRYQEDKTQHSGDKQANSE 300
           CEHLRVNLQRAEEE        VKLLYEDNMLLDKENKKLLKRYQEDKTQHSGDKQANSE
Sbjct: 241 CEHLRVNLQRAEEE--------VKLLYEDNMLLDKENKKLLKRYQEDKTQHSGDKQANSE 291

Query: 301 SAAKTRSEQS 311
           SAAK+   +S
Sbjct: 301 SAAKSNKRKS 291

[Close]

BLAST of CmoCh09G005640 vs. ExPASy TrEMBL
Match: A0A6J1IFK4 (centriolin OS=Cucurbita maxima OX=3661 GN=LOC111476798 PE=4 SV=1)

HSP 1 Score: 530.8 bits (1366), Expect = 7.7e-147
Identity = 284/310 (91.61%), Postives = 286/310 (92.26%), Query Frame = 0


Query: 1   MDLPSEVENYIKETIDHALGLPVSVETLELKLRVSQDSQRRLAHHCDALQSKIKEKEQLI 60
           MDLPSEVENYIKETIDHALGLPVSVETLELKLRVSQDSQRRLAHHCDALQSKIKEKEQLI
Sbjct: 1   MDLPSEVENYIKETIDHALGLPVSVETLELKLRVSQDSQRRLAHHCDALQSKIKEKEQLI 60

Query: 61  ERSRAEATMNAQALKKFVDENRKLATECLYLSGQCEKWERECSLYDHDRDALMEFGNEAD 120
           ERSRAEATMNAQALKKFVDENRKLATECLYLSGQCEKWERECSLYDHDRDALMEFGNEAD
Sbjct: 61  ERSRAEATMNAQALKKFVDENRKLATECLYLSGQCEKWERECSLYDHDRDALMEFGNEAD 120

Query: 121 QRAREAENRVHELEEEVRRLSDELQFFKHEHEMKKVIASPLKHLCVVDSSSDGRDLEDNL 180
           QRAREAENRV ELEEEVRRLSDELQFFKHEHEMKK           VDSSSDGRDLEDNL
Sbjct: 121 QRAREAENRVRELEEEVRRLSDELQFFKHEHEMKK-----------VDSSSDGRDLEDNL 180

Query: 181 LELVLPTCNCYDRVTSAHAFLETSIDQDSSQKLMKMWNCLKPSTQKTLSLAAYVKAVEKD 240
           LELVLPTCNCYDRV SAHAFLETSIDQDSSQKLMKMWNCLKPSTQKTLSLAAYVKAVEKD
Sbjct: 181 LELVLPTCNCYDRVKSAHAFLETSIDQDSSQKLMKMWNCLKPSTQKTLSLAAYVKAVEKD 240

Query: 241 CEHLRVNLQRAEEERAYASYMQVKLLYEDNMLLDKENKKLLKRYQEDKTQHSGDKQANSE 300
           CEHLRVNLQRAEEE        VKLLYEDNMLLDKENKKLLKRYQEDKTQHSGDKQANSE
Sbjct: 241 CEHLRVNLQRAEEE--------VKLLYEDNMLLDKENKKLLKRYQEDKTQHSGDKQANSE 291

Query: 301 SAAKTRSEQS 311
           SAAK+   +S
Sbjct: 301 SAAKSNKRKS 291

[Close]

BLAST of CmoCh09G005640 vs. ExPASy TrEMBL
Match: A0A498JD94 (Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_042589 PE=4 SV=1)

HSP 1 Score: 498.8 bits (1283), Expect = 3.3e-137
Identity = 304/640 (47.50%), Postives = 395/640 (61.72%), Query Frame = 0


Query: 1   MDLPSEVENYIKETIDHALGLPVSVETLELKLRVSQDSQRRLAHHCDALQSKIKEKEQLI 60
           M+LP E+++YIKE+IDH+LGLPVS  TLELK R  ++++RRL +    + SK+KEKEQ++
Sbjct: 1   MNLPQEIDDYIKESIDHSLGLPVSTHTLELKFRCCEEAKRRLQNQYSLILSKLKEKEQVL 60

Query: 61  ERSRAEATMNAQALKKFVDENRKLATECLYLSGQCEKWERECSLYDHDRDALMEFGNEAD 120
           ER++AEA+MNAQAL+KFV+EN++LA+EC +L  QC KWERECSLYDHDR+ALM+FGNEAD
Sbjct: 61  ERAKAEASMNAQALRKFVEENQRLASECAHLVTQCNKWERECSLYDHDREALMDFGNEAD 120

Query: 121 QRAREAENRVHELEEEVRRLSDELQFFKHEHEMKKVIASPLKHLCVVDSSSDGRDLEDNL 180
           QRA+EAE RV +LE+EVR L DEL  +K++ EM             VDSS++   +ED L
Sbjct: 121 QRAKEAEIRVQKLEDEVRELRDELGLYKYKMEMHP-----------VDSSAEDTAIEDKL 180

Query: 181 LELVLPTCNCYDRVTSAHAFLETSIDQDSSQKLMKMWNCLKPSTQKTLSLAAYVKAVEKD 240
           L+ VL T    D   SA AFLE +   +S  +L+K+   LKPS+QK LSL A VK +EKD
Sbjct: 181 LDSVLATLISKDEAVSARAFLEANKGNESCARLLKI---LKPSSQKVLSLVAEVKTLEKD 240

Query: 241 CEHLRVNLQRAEEERAYASYMQVKLLYEDNMLLDKENKKLLKRYQEDKTQH-SGDKQANS 300
            EHLR+NL+ AEEE        VKLL+E+N +LD ENK+LL+ YQ+++    SG K  +S
Sbjct: 241 KEHLRINLRTAEEE--------VKLLFEENKVLDVENKRLLRLYQKERNHSASGGKHTDS 300

Query: 301 ESAAKTR-----------------SEQSAV------------------------------ 360
            SA   +                 SEQ A                               
Sbjct: 301 ASAKSNKRKSSSKTSSPIQGKIDFSEQEAARQPLSPLRCNSPNSRTSKSSTAMALLRHLS 360

Query: 361 -------------------------------------------SAGHGSASIRAKRTRKF 420
                                                           S+S+RAK+   F
Sbjct: 361 FPTEQLLPLTTLLSLQIPQHLSKHTPTTLSLSPSLCSPSLFLPQTHSRSSSLRAKKLGNF 420

Query: 421 VFQLASTSQDDAVASS---SSDAEEFSRNRLLAQNVPWDSTPEDIRSLFEKYGTVVDVEL 480
           V Q ++ +QD A+  +    ++ EEFS  RLLAQNVPW  TPED+R++FEKYGTVVDVEL
Sbjct: 421 VLQFSAAAQDQALDETPVLEAEPEEFSDTRLLAQNVPWHCTPEDVRTVFEKYGTVVDVEL 480

Query: 481 SMYNKIRNRGLAFVTMGSPEEALAAVNNLES--------YLNYAKVKKEK-PSPPVKPNP 538
           +MY+K RNRGLAFVTMGSPEEA  A++NLES         + YA+ KK K P P  +P P
Sbjct: 481 AMYDKTRNRGLAFVTMGSPEEARMALDNLESSEMEGRVIKMAYARPKKTKIPPPSSQPKP 540

[Close]

BLAST of CmoCh09G005640 vs. NCBI nr
Match: EXB86655.1 (28 kDa ribonucleoprotein [Morus notabilis])

HSP 1 Score: 547.4 bits (1409), Expect = 1.7e-151
Identity = 321/616 (52.11%), Postives = 412/616 (66.88%), Query Frame = 0


Query: 1   MDLPSEVENYIKETIDHALGLPVSVETLELKLRVSQDSQRRLAHHCDALQSKIKEKEQLI 60
           M+LP E+++YIKE+I H LGLPVS  TLELKL+ S+++Q RL   C  L S++KEK+Q I
Sbjct: 1   MELPQEIDDYIKESIQHTLGLPVSRSTLELKLQASEEAQSRLRDQCLLLHSRLKEKDQAI 60

Query: 61  ERSRAEATMNAQALKKFVDENRKLATECLYLSGQCEKWERECSLYDHDRDALMEFGNEAD 120
           ER+RAE++M+A ALKKFV+EN+KLA+EC +L  QC K E+ECSLYD+DR+ALM+FGNEAD
Sbjct: 61  ERARAESSMSALALKKFVEENQKLASECAHLLNQCNKLEKECSLYDNDREALMDFGNEAD 120

Query: 121 QRAREAENRVHELEEEVRRLSDELQFFKHEHEMKKVIASPLKHLCVVDSSSDGRDLEDNL 180
           QRA+EAE RV ELEEEVR LSDELQF+K + E            C+VDSS  G   +D+L
Sbjct: 121 QRAKEAELRVQELEEEVRGLSDELQFYKRQCE-----------ACMVDSSLQGVTTQDSL 180

Query: 181 LELVLPTCNCYDRVTSAHAFLETSIDQDSSQKLMKMWNCLKPSTQKTLSLAAYVKAVEKD 240
           LE VL T    D     HAFLE +   +S  +L++MWN LKPSTQK LSLAA  KA+EKD
Sbjct: 181 LESVLATLISGDDAVPGHAFLEANSSHESCLRLLEMWNFLKPSTQKVLSLAAEFKALEKD 240

Query: 241 CEHLRVNLQRAEEERAYASYMQVKLLYEDNMLLDKENKKLLKRYQEDKTQHSGDKQANSE 300
            EHLR NL RAEEE        VKLL+E+N +LD+ENKKLL ++ +++ QH    +  S 
Sbjct: 241 KEHLRTNLYRAEEE--------VKLLFEENNMLDEENKKLLMKFNKERNQHGSSGKHASS 300

Query: 301 SAAKTRSEQSA------------------------------------------------- 360
           + AK+   +S+                                                 
Sbjct: 301 APAKSNKRKSSSKTSSLIEKKIDFSEADMPRPPLSPLRCEEQTHFTPLCSLQNPHKNTLS 360

Query: 361 ----------VSAGHGSAS---IRAKRTRKFVFQLASTSQDDAVAS--------SSSDAE 420
                     +S  H + S   I+++R    V   +ST+Q+ A+ S        + S+ E
Sbjct: 361 VSCSLSCVFPLSHTHNAPSSRLIKSRRDGTLVSHFSSTAQEQALESPPASESGETGSETE 420

Query: 421 EFSRNRLLAQNVPWDSTPEDIRSLFEKYGTVVDVELSMYNKIRNRGLAFVTMGSPEEALA 480
           E  +NRL AQNVPW+ TPEDIR+LFEKYGTV DVELSM+NK RNRGLAFVTMGSPEEALA
Sbjct: 421 EVLKNRLYAQNVPWNCTPEDIRALFEKYGTVEDVELSMFNKTRNRGLAFVTMGSPEEALA 480

Query: 481 AVNNLESY--------LNYAKVKKEKPSPPVKPNP-VTFNLFVANLPFDARAKDLREFFD 538
           A+NNL+SY        ++YA+++K+K + P++P P VTFNLFVANL F+ARAKDLREFF+
Sbjct: 481 ALNNLQSYELDGRVIKIDYARLRKKKVTTPMQPKPEVTFNLFVANLSFEARAKDLREFFN 540

[Close]

BLAST of CmoCh09G005640 vs. NCBI nr
Match: XP_022937390.1 (uncharacterized protein LOC111443694 [Cucurbita moschata] >KAG6591683.1 hypothetical protein SDJN03_14029, partial [Cucurbita argyrosperma subsp. sororia] >KAG7024564.1 hypothetical protein SDJN02_13382 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 536.2 bits (1380), Expect = 3.8e-148
Identity = 286/310 (92.26%), Postives = 288/310 (92.90%), Query Frame = 0


Query: 1   MDLPSEVENYIKETIDHALGLPVSVETLELKLRVSQDSQRRLAHHCDALQSKIKEKEQLI 60
           MDLPSEVENYIKETIDHALGLPVSVETLELKLRVSQDSQRRLAHHCDALQSKIKEKEQLI
Sbjct: 1   MDLPSEVENYIKETIDHALGLPVSVETLELKLRVSQDSQRRLAHHCDALQSKIKEKEQLI 60

Query: 61  ERSRAEATMNAQALKKFVDENRKLATECLYLSGQCEKWERECSLYDHDRDALMEFGNEAD 120
           ERSRAEATMNAQALKKFVDENRKLATECLYLSGQCEKWERECSLYDHDRDALMEFGNEAD
Sbjct: 61  ERSRAEATMNAQALKKFVDENRKLATECLYLSGQCEKWERECSLYDHDRDALMEFGNEAD 120

Query: 121 QRAREAENRVHELEEEVRRLSDELQFFKHEHEMKKVIASPLKHLCVVDSSSDGRDLEDNL 180
           QRAREAENRVHELEEEVRRLSDELQFFKHEHEMKK           VDSSSDGRDLEDNL
Sbjct: 121 QRAREAENRVHELEEEVRRLSDELQFFKHEHEMKK-----------VDSSSDGRDLEDNL 180

Query: 181 LELVLPTCNCYDRVTSAHAFLETSIDQDSSQKLMKMWNCLKPSTQKTLSLAAYVKAVEKD 240
           LELVLPTCNCYDRVTSAHAFLETSIDQDSSQKLMKMWNCLKPSTQKTLSLAAYVKAVEKD
Sbjct: 181 LELVLPTCNCYDRVTSAHAFLETSIDQDSSQKLMKMWNCLKPSTQKTLSLAAYVKAVEKD 240

Query: 241 CEHLRVNLQRAEEERAYASYMQVKLLYEDNMLLDKENKKLLKRYQEDKTQHSGDKQANSE 300
           CEHLRVNLQRAEEE        VKLLYEDNMLLDKENKKLLKRYQEDKTQHSGDKQANSE
Sbjct: 241 CEHLRVNLQRAEEE--------VKLLYEDNMLLDKENKKLLKRYQEDKTQHSGDKQANSE 291

Query: 301 SAAKTRSEQS 311
           SAAK+   +S
Sbjct: 301 SAAKSNKRKS 291

[Close]

BLAST of CmoCh09G005640 vs. NCBI nr
Match: XP_023534966.1 (tropomyosin-2-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 533.1 bits (1372), Expect = 3.2e-147
Identity = 284/310 (91.61%), Postives = 288/310 (92.90%), Query Frame = 0


Query: 1   MDLPSEVENYIKETIDHALGLPVSVETLELKLRVSQDSQRRLAHHCDALQSKIKEKEQLI 60
           MDLPSEVENYIKETIDHALGLPVSVETLELKLRVSQDSQRRLAHHCDALQSKIKEKEQLI
Sbjct: 1   MDLPSEVENYIKETIDHALGLPVSVETLELKLRVSQDSQRRLAHHCDALQSKIKEKEQLI 60

Query: 61  ERSRAEATMNAQALKKFVDENRKLATECLYLSGQCEKWERECSLYDHDRDALMEFGNEAD 120
           ERSRAEATMNAQALKKFVDENRKLATECLYLSGQCEKWERECSLYDHDRDALMEFGNEAD
Sbjct: 61  ERSRAEATMNAQALKKFVDENRKLATECLYLSGQCEKWERECSLYDHDRDALMEFGNEAD 120

Query: 121 QRAREAENRVHELEEEVRRLSDELQFFKHEHEMKKVIASPLKHLCVVDSSSDGRDLEDNL 180
           QRAREAENRVHELEEEVR+LSDELQFFKHEHEMKK           VDSSSDGRDLEDNL
Sbjct: 121 QRAREAENRVHELEEEVRQLSDELQFFKHEHEMKK-----------VDSSSDGRDLEDNL 180

Query: 181 LELVLPTCNCYDRVTSAHAFLETSIDQDSSQKLMKMWNCLKPSTQKTLSLAAYVKAVEKD 240
           LELVLPTCNCY+RVTSAHAFLETSIDQDSSQKLMKMWNCLKPSTQKTLSLAAYVKAVEKD
Sbjct: 181 LELVLPTCNCYERVTSAHAFLETSIDQDSSQKLMKMWNCLKPSTQKTLSLAAYVKAVEKD 240

Query: 241 CEHLRVNLQRAEEERAYASYMQVKLLYEDNMLLDKENKKLLKRYQEDKTQHSGDKQANSE 300
           CEHLRVNLQRAEEE        VKLLYEDNMLLDKENKKLLKRYQEDKTQHSGDKQANSE
Sbjct: 241 CEHLRVNLQRAEEE--------VKLLYEDNMLLDKENKKLLKRYQEDKTQHSGDKQANSE 291

Query: 301 SAAKTRSEQS 311
           SAAK+   +S
Sbjct: 301 SAAKSNKRKS 291

[Close]

BLAST of CmoCh09G005640 vs. NCBI nr
Match: XP_022976377.1 (centriolin [Cucurbita maxima])

HSP 1 Score: 530.8 bits (1366), Expect = 1.6e-146
Identity = 284/310 (91.61%), Postives = 286/310 (92.26%), Query Frame = 0


Query: 1   MDLPSEVENYIKETIDHALGLPVSVETLELKLRVSQDSQRRLAHHCDALQSKIKEKEQLI 60
           MDLPSEVENYIKETIDHALGLPVSVETLELKLRVSQDSQRRLAHHCDALQSKIKEKEQLI
Sbjct: 1   MDLPSEVENYIKETIDHALGLPVSVETLELKLRVSQDSQRRLAHHCDALQSKIKEKEQLI 60

Query: 61  ERSRAEATMNAQALKKFVDENRKLATECLYLSGQCEKWERECSLYDHDRDALMEFGNEAD 120
           ERSRAEATMNAQALKKFVDENRKLATECLYLSGQCEKWERECSLYDHDRDALMEFGNEAD
Sbjct: 61  ERSRAEATMNAQALKKFVDENRKLATECLYLSGQCEKWERECSLYDHDRDALMEFGNEAD 120

Query: 121 QRAREAENRVHELEEEVRRLSDELQFFKHEHEMKKVIASPLKHLCVVDSSSDGRDLEDNL 180
           QRAREAENRV ELEEEVRRLSDELQFFKHEHEMKK           VDSSSDGRDLEDNL
Sbjct: 121 QRAREAENRVRELEEEVRRLSDELQFFKHEHEMKK-----------VDSSSDGRDLEDNL 180

Query: 181 LELVLPTCNCYDRVTSAHAFLETSIDQDSSQKLMKMWNCLKPSTQKTLSLAAYVKAVEKD 240
           LELVLPTCNCYDRV SAHAFLETSIDQDSSQKLMKMWNCLKPSTQKTLSLAAYVKAVEKD
Sbjct: 181 LELVLPTCNCYDRVKSAHAFLETSIDQDSSQKLMKMWNCLKPSTQKTLSLAAYVKAVEKD 240

Query: 241 CEHLRVNLQRAEEERAYASYMQVKLLYEDNMLLDKENKKLLKRYQEDKTQHSGDKQANSE 300
           CEHLRVNLQRAEEE        VKLLYEDNMLLDKENKKLLKRYQEDKTQHSGDKQANSE
Sbjct: 241 CEHLRVNLQRAEEE--------VKLLYEDNMLLDKENKKLLKRYQEDKTQHSGDKQANSE 291

Query: 301 SAAKTRSEQS 311
           SAAK+   +S
Sbjct: 301 SAAKSNKRKS 291

[Close]

BLAST of CmoCh09G005640 vs. NCBI nr
Match: RXH92815.1 (hypothetical protein DVH24_042589 [Malus domestica])

HSP 1 Score: 498.8 bits (1283), Expect = 6.7e-137
Identity = 304/640 (47.50%), Postives = 395/640 (61.72%), Query Frame = 0


Query: 1   MDLPSEVENYIKETIDHALGLPVSVETLELKLRVSQDSQRRLAHHCDALQSKIKEKEQLI 60
           M+LP E+++YIKE+IDH+LGLPVS  TLELK R  ++++RRL +    + SK+KEKEQ++
Sbjct: 1   MNLPQEIDDYIKESIDHSLGLPVSTHTLELKFRCCEEAKRRLQNQYSLILSKLKEKEQVL 60

Query: 61  ERSRAEATMNAQALKKFVDENRKLATECLYLSGQCEKWERECSLYDHDRDALMEFGNEAD 120
           ER++AEA+MNAQAL+KFV+EN++LA+EC +L  QC KWERECSLYDHDR+ALM+FGNEAD
Sbjct: 61  ERAKAEASMNAQALRKFVEENQRLASECAHLVTQCNKWERECSLYDHDREALMDFGNEAD 120

Query: 121 QRAREAENRVHELEEEVRRLSDELQFFKHEHEMKKVIASPLKHLCVVDSSSDGRDLEDNL 180
           QRA+EAE RV +LE+EVR L DEL  +K++ EM             VDSS++   +ED L
Sbjct: 121 QRAKEAEIRVQKLEDEVRELRDELGLYKYKMEMHP-----------VDSSAEDTAIEDKL 180

Query: 181 LELVLPTCNCYDRVTSAHAFLETSIDQDSSQKLMKMWNCLKPSTQKTLSLAAYVKAVEKD 240
           L+ VL T    D   SA AFLE +   +S  +L+K+   LKPS+QK LSL A VK +EKD
Sbjct: 181 LDSVLATLISKDEAVSARAFLEANKGNESCARLLKI---LKPSSQKVLSLVAEVKTLEKD 240

Query: 241 CEHLRVNLQRAEEERAYASYMQVKLLYEDNMLLDKENKKLLKRYQEDKTQH-SGDKQANS 300
            EHLR+NL+ AEEE        VKLL+E+N +LD ENK+LL+ YQ+++    SG K  +S
Sbjct: 241 KEHLRINLRTAEEE--------VKLLFEENKVLDVENKRLLRLYQKERNHSASGGKHTDS 300

Query: 301 ESAAKTR-----------------SEQSAV------------------------------ 360
            SA   +                 SEQ A                               
Sbjct: 301 ASAKSNKRKSSSKTSSPIQGKIDFSEQEAARQPLSPLRCNSPNSRTSKSSTAMALLRHLS 360

Query: 361 -------------------------------------------SAGHGSASIRAKRTRKF 420
                                                           S+S+RAK+   F
Sbjct: 361 FPTEQLLPLTTLLSLQIPQHLSKHTPTTLSLSPSLCSPSLFLPQTHSRSSSLRAKKLGNF 420

Query: 421 VFQLASTSQDDAVASS---SSDAEEFSRNRLLAQNVPWDSTPEDIRSLFEKYGTVVDVEL 480
           V Q ++ +QD A+  +    ++ EEFS  RLLAQNVPW  TPED+R++FEKYGTVVDVEL
Sbjct: 421 VLQFSAAAQDQALDETPVLEAEPEEFSDTRLLAQNVPWHCTPEDVRTVFEKYGTVVDVEL 480

Query: 481 SMYNKIRNRGLAFVTMGSPEEALAAVNNLES--------YLNYAKVKKEK-PSPPVKPNP 538
           +MY+K RNRGLAFVTMGSPEEA  A++NLES         + YA+ KK K P P  +P P
Sbjct: 481 AMYDKTRNRGLAFVTMGSPEEARMALDNLESSEMEGRVIKMAYARPKKTKIPPPSSQPKP 540

[Close]

BLAST of CmoCh09G005640 vs. TAIR 10
Match: AT4G09040.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 247.7 bits (631), Expect = 2.5e-65
Identity = 137/242 (56.61%), Postives = 178/242 (73.55%), Query Frame = 0


Query: 320 SIRAKRTRKFVFQLASTSQDDAVASSSSDA-------EEFSRNRLLAQNVPWDSTPEDIR 379
           SI AK +R      ++T+Q+  + SSSS +       EE S+ RL+AQNVPW STPEDIR
Sbjct: 53  SIPAK-SRNLTSYFSTTTQEPVLESSSSSSSAPEVVEEEISKTRLIAQNVPWTSTPEDIR 112

Query: 380 SLFEKYGTVVDVELSMYNKIRNRGLAFVTMGSPEEALAAVNNLES--------YLNYAKV 439
           SLFEKYG+V+D+E+SM+ K RNRGL F+ M SPEEA  A+ +LES         ++YAK 
Sbjct: 113 SLFEKYGSVIDIEMSMHKKERNRGLVFIEMASPEEAATALKSLESCEYEGRRLKVDYAKT 172

Query: 440 KKEKP-SPPVKPNPV-TFNLFVANLPFDARAKDLREFFDSGSGNVVSAQIIFHENPRRSS 499
           KK+K  +P   P+PV TFNLFVANL F+ARAK L+EFFD+ +GNVVS ++IFHENPRRSS
Sbjct: 173 KKKKTYAPRETPSPVPTFNLFVANLAFEARAKHLKEFFDADTGNVVSTEVIFHENPRRSS 232

Query: 500 GYGFVAFKTKKDAEAAISEFQGKNFMGRSLRVARSKQFVKL-------PSEEKSQSEDTS 538
           GYGFV+FKTKK AEAA+ EFQGK+F+GR +R+A+SKQFVKL       P EE+++ E + 
Sbjct: 233 GYGFVSFKTKKQAEAALIEFQGKDFLGRPIRLAKSKQFVKLQAKEGLQPPEEEAEEEPSQ 292

[Close]

BLAST of CmoCh09G005640 vs. TAIR 10
Match: AT4G09040.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 239.2 bits (609), Expect = 9.0e-63
Identity = 124/202 (61.39%), Postives = 158/202 (78.22%), Query Frame = 0


Query: 353 SRNRLLAQNVPWDSTPEDIRSLFEKYGTVVDVELSMYNKIRNRGLAFVTMGSPEEALAAV 412
           S+ RL+AQNVPW STPEDIRSLFEKYG+V+D+E+SM+ K RNRGL F+ M SPEEA  A+
Sbjct: 32  SKTRLIAQNVPWTSTPEDIRSLFEKYGSVIDIEMSMHKKERNRGLVFIEMASPEEAATAL 91

Query: 413 NNLES--------YLNYAKVKKEKP-SPPVKPNPV-TFNLFVANLPFDARAKDLREFFDS 472
            +LES         ++YAK KK+K  +P   P+PV TFNLFVANL F+ARAK L+EFFD+
Sbjct: 92  KSLESCEYEGRRLKVDYAKTKKKKTYAPRETPSPVPTFNLFVANLAFEARAKHLKEFFDA 151

Query: 473 GSGNVVSAQIIFHENPRRSSGYGFVAFKTKKDAEAAISEFQGKNFMGRSLRVARSKQFVK 532
            +GNVVS ++IFHENPRRSSGYGFV+FKTKK AEAA+ EFQGK+F+GR +R+A+SKQFVK
Sbjct: 152 DTGNVVSTEVIFHENPRRSSGYGFVSFKTKKQAEAALIEFQGKDFLGRPIRLAKSKQFVK 211

Query: 533 L-------PSEEKSQSEDTSTD 538
           L       P EE+++ E + ++
Sbjct: 212 LQAKEGLQPPEEEAEEEPSQSE 233

[Close]

BLAST of CmoCh09G005640 vs. TAIR 10
Match: AT4G09060.2 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G14680.1). )

HSP 1 Score: 238.4 bits (607), Expect = 1.5e-62
Identity = 147/326 (45.09%), Postives = 208/326 (63.80%), Query Frame = 0


Query: 2   DLPSEVENYIKETIDHALGLPVSVETLELKLRVSQDSQRRLAHHCDALQSKIKEKEQLIE 61
           +L  EVE YIK+TIDH+LGLP+S+E+L+ KL  +++SQRRL      L S++KEK+ +I+
Sbjct: 18  NLSQEVEEYIKDTIDHSLGLPISMESLQKKLYTAEESQRRLREQYQGLISRLKEKDHVID 77

Query: 62  RSRAEATMNAQALKKFVDENRKLATECLYLSGQCEKWERECSLYDHDRDALMEFGNEADQ 121
           R R+EA+MNAQALKKFV+EN+KLA+EC  L  QC+K E+EC LY  DRDALMEFGNE+D+
Sbjct: 78  RVRSEASMNAQALKKFVEENQKLASECGNLLSQCKKLEKECLLYHQDRDALMEFGNESDE 137

Query: 122 RAREAENRVHELEEEVRRLSDELQFFKHE---------------HEMKKVIASPLKHLCV 181
           RAREAE RV ELE+E+ R+S+E+Q FK +                +   ++A+   H  +
Sbjct: 138 RAREAEARVRELEDEIGRMSEEMQRFKRQIGDGEKLERSVRVNISKKMYLLAATYNHFNI 197

Query: 182 VDSSSDGRDLEDNLLELVLPTCNCYDRVTSAHAFLETSIDQDSSQKLMKMWNCLKPSTQK 241
           V++ +    LE++LL+ VL +    D       FLE +I   S Q L+  W+ LKPSTQK
Sbjct: 198 VENCT--TPLEEDLLDSVLGSLISKDETIMGRLFLEANIHDQSCQALLSKWDHLKPSTQK 257

Query: 242 TLSLAAYVKAVEKDCEHLRVNLQRAEEERAYASYMQVKLLYEDNMLLDKENKKLLKRYQE 301
            LSL +  K  EK+ E + +NL +AE+E        V+L+   N  LDKEN+KLL++ Q 
Sbjct: 258 VLSLVSKAKKFEKEKECIIMNLAKAEQE--------VELVSTLNRKLDKENRKLLRQQQS 317

Query: 302 -----DKTQHSGDKQANSESAAKTRS 308
                DK ++S   ++N   + KT S
Sbjct: 318 PLCSADKNRNSASAKSNKRKSPKTMS 333

[Close]

BLAST of CmoCh09G005640 vs. TAIR 10
Match: AT4G09060.1 (unknown protein; LOCATED IN: membrane; EXPRESSED IN: leaf; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G14680.1); Has 8168 Blast hits to 6036 proteins in 601 species: Archae - 151; Bacteria - 570; Metazoa - 4684; Fungi - 544; Plants - 345; Viruses - 91; Other Eukaryotes - 1783 (source: NCBI BLink). )

HSP 1 Score: 235.3 bits (599), Expect = 1.3e-61
Identity = 146/311 (46.95%), Postives = 199/311 (63.99%), Query Frame = 0


Query: 2   DLPSEVENYIKETIDHALGLPVSVETLELKLRVSQDSQRRLAHHCDALQSKIKEKEQLIE 61
           +L  EVE YIK+TIDH+LGLP+S+E+L+ KL  +++SQRRL      L S++KEK+ +I+
Sbjct: 18  NLSQEVEEYIKDTIDHSLGLPISMESLQKKLYTAEESQRRLREQYQGLISRLKEKDHVID 77

Query: 62  RSRAEATMNAQALKKFVDENRKLATECLYLSGQCEKWERECSLYDHDRDALMEFGNEADQ 121
           R R+EA+MNAQALKKFV+EN+KLA+EC  L  QC+K E+EC LY  DRDALMEFGNE+D+
Sbjct: 78  RVRSEASMNAQALKKFVEENQKLASECGNLLSQCKKLEKECLLYHQDRDALMEFGNESDE 137

Query: 122 RAREAENRVHELEEEVRRLSDELQFFKHEHEMKKVIASPLKHLCVVDSSSDGRDLEDNLL 181
           RAREAE RV ELE+E+ R+S+E+Q FK +      I       C          LE++LL
Sbjct: 138 RAREAEARVRELEDEIGRMSEEMQRFKRQ------IGDGEVENCTT-------PLEEDLL 197

Query: 182 ELVLPTCNCYDRVTSAHAFLETSIDQDSSQKLMKMWNCLKPSTQKTLSLAAYVKAVEKDC 241
           + VL +    D       FLE +I   S Q L+  W+ LKPSTQK LSL +  K  EK+ 
Sbjct: 198 DSVLGSLISKDETIMGRLFLEANIHDQSCQALLSKWDHLKPSTQKVLSLVSKAKKFEKEK 257

Query: 242 EHLRVNLQRAEEERAYASYMQVKLLYEDNMLLDKENKKLLKRYQE-----DKTQHSGDKQ 301
           E + +NL +AE+E        V+L+   N  LDKEN+KLL++ Q      DK ++S   +
Sbjct: 258 ECIIMNLAKAEQE--------VELVSTLNRKLDKENRKLLRQQQSPLCSADKNRNSASAK 307

Query: 302 ANSESAAKTRS 308
           +N   + KT S
Sbjct: 318 SNKRKSPKTMS 307

[Close]

BLAST of CmoCh09G005640 vs. TAIR 10
Match: AT1G14680.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G09060.1); Has 8132 Blast hits to 6366 proteins in 685 species: Archae - 171; Bacteria - 671; Metazoa - 4046; Fungi - 445; Plants - 318; Viruses - 23; Other Eukaryotes - 2458 (source: NCBI BLink). )

HSP 1 Score: 211.8 bits (538), Expect = 1.5e-54
Identity = 135/308 (43.83%), Postives = 197/308 (63.96%), Query Frame = 0


Query: 1   MDLPSEVENYIKETIDHALGLPVSVETLELKLRVSQDSQRRLAHHCDALQSKIKEKEQLI 60
           MDL  EV+++IKETIDH+LGLP+S++ L+ KL  +++SQRRL     +L S++KEKE++I
Sbjct: 1   MDLSREVDDFIKETIDHSLGLPISMDVLQKKLYTAEESQRRLREQYLSLVSRLKEKEKVI 60

Query: 61  ERSRAEATMNAQALKKFVDENRKLATECLYLSGQCEKWERECSLYDHDRDALMEFGNEAD 120
           +  R+EA+MNAQ+LKKFV+EN+KL +E   L  QC+KWE+EC LY  DR++LMEFGNE D
Sbjct: 61  DLVRSEASMNAQSLKKFVEENQKLGSEREDLVNQCKKWEKECFLYHQDRESLMEFGNETD 120

Query: 121 QRAREAENRVHELEEEVRRLSDELQFFKHEHEMKKVIASPLKHLCVVDSSSDGRDLEDNL 180
           +RAREAE+RV ELEEEVR++SDE+         K  I S  +  C+VDS       +D  
Sbjct: 121 ERAREAESRVRELEEEVRKMSDEI---------KSRIES--EEDCLVDSILASFVSKDES 180

Query: 181 LELVLPTCNCYDRVTSAHAFLETSIDQDS-SQKLMKMWNCLKPSTQKTLSLAAYVKAVEK 240
           + L                FLE + ++D   + L++ W+ LKP+TQK +SL + VK +EK
Sbjct: 181 ISL-------------GRIFLEANSEEDKCCETLLRKWDQLKPTTQKFVSLVSMVKRIEK 240

Query: 241 DCEHLRVNLQRAEEERAYASYMQVKLLYEDNMLLDKENKKLLKRYQEDKTQHSGDKQANS 300
           + E L +NL +AE+E        V+L+ E N  LD+EN+K L++   +++   G  + N 
Sbjct: 241 EKECLIMNLAKAEQE--------VELVSEQNRELDRENRKFLRQCSAERSH--GSNKFNK 274

Query: 301 ESAAKTRS 308
             + K  S
Sbjct: 301 RKSIKMMS 274

The following BLAST results are available for this feature:

BLAST of CmoCh09G005640 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q39061	1.6e-16	28.16	RNA-binding protein CP33, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP33 ...	[more]
P19683	3.6e-16	30.50	31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=1 SV=...	[more]
Q9FGS0	8.0e-16	31.36	RNA-binding protein CP31B, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP31...	[more]
P19682	1.0e-15	30.85	28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=1 SV=...	[more]
Q04836	1.8e-15	31.18	31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP31A...	[more]

BLAST of CmoCh09G005640 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2N9IYL3	5.5e-161	55.17	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS58309 PE=4 SV=1	[more]
W9REI7	8.0e-152	52.11	28 kDa ribonucleoprotein OS=Morus notabilis OX=981085 GN=L484_013185 PE=4 SV=1	[more]
A0A6J1FGH5	1.8e-148	92.26	uncharacterized protein LOC111443694 OS=Cucurbita moschata OX=3662 GN=LOC1114436...	[more]
A0A6J1IFK4	7.7e-147	91.61	centriolin OS=Cucurbita maxima OX=3661 GN=LOC111476798 PE=4 SV=1	[more]
A0A498JD94	3.3e-137	47.50	Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_042589 PE=4 SV=1	[more]

BLAST of CmoCh09G005640 vs. NCBI nr


Match Name	E-value	Identity	Description
EXB86655.1	1.7e-151	52.11	28 kDa ribonucleoprotein [Morus notabilis]	[more]
XP_022937390.1	3.8e-148	92.26	uncharacterized protein LOC111443694 [Cucurbita moschata] >KAG6591683.1 hypothet...	[more]
XP_023534966.1	3.2e-147	91.61	tropomyosin-2-like isoform X1 [Cucurbita pepo subsp. pepo]	[more]
XP_022976377.1	1.6e-146	91.61	centriolin [Cucurbita maxima]	[more]
RXH92815.1	6.7e-137	47.50	hypothetical protein DVH24_042589 [Malus domestica]	[more]

BLAST of CmoCh09G005640 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G09040.1	2.5e-65	56.61	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT4G09040.2	9.0e-63	61.39	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT4G09060.2	1.5e-62	45.09	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT4G09060.1	1.3e-61	46.95	unknown protein; LOCATED IN: membrane; EXPRESSED IN: leaf; BEST Arabidopsis thal...	[more]
AT1G14680.1	1.5e-54	43.83	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 234..254
None	No IPR available	COILS	Coil	Coil	coord: 116..150
None	No IPR available	COILS	Coil	Coil	coord: 46..66
None	No IPR available	GENE3D	1.20.5.170		coord: 37..164 e-value: 1.2E-6 score: 30.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 295..316
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 286..319
None	No IPR available	PANTHER	PTHR23003:SF35	OS08G0483200 PROTEIN	coord: 301..538
None	No IPR available	PANTHER	PTHR23003	RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN	coord: 301..538
None	No IPR available	CDD	cd00590	RRM_SF	coord: 361..415 e-value: 3.98544E-14 score: 65.7893
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 356..427 e-value: 1.1E-12 score: 58.1 coord: 441..515 e-value: 3.2E-22 score: 89.8
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 360..416 e-value: 5.8E-11 score: 42.1 coord: 442..513 e-value: 2.9E-17 score: 62.2
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 440..519 score: 18.239782
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 355..429 score: 13.720102
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 272..430 e-value: 2.6E-16 score: 61.9
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 437..540 e-value: 2.6E-22 score: 81.2
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 428..522
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 345..417

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh09G005640.1	CmoCh09G005640.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding