CmoCh09G005490 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh09G005490
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionUnknown protein
LocationCmo_Chr09: 2616397 .. 2619455 (-)
RNA-Seq ExpressionCmoCh09G005490
SyntenyCmoCh09G005490
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGGTAAATATAGATCTTCTTTGGCATACACTATTTGTTAGGCTGAATCTCTGTTTGTTTAGTTTGATTTAAAGTGGGATTAGTGATAGAATTGTTAAGTCCACTAATAGTAGATATTGTCCTCTTTGGGATTTTTTCCGAGCTTCCACTCAAGGTTTTAAAACGTGTCTGTTTGGGAGAGGTTTCCACGATTTTTTCCTTTTGAGCTTCCACTCAAGGTTTTAAAACGCGTCTGTTTGGGAGAGGTTTCCACGATTTTTCCCTTTTGAGCTTCCACTCAAGGTTTTAAAACACGTCTGTTAGGGAGAGGTTTCTACACCCTTTTAAAGAATGCTTCATTCCTCTCTCCAACTAATATGGGATCTCACAATCCACCCCCTTCGTGGCCTAGTGTCCTCACTATCACAATCCACCCCCTTCGTGGCCCAGTGTCCTCACTATCACAATCCACCCCCTTCGTGGCCCAGTGTCCTCACTATCACAATCCACCCCCTTCGTGGCCCAGTCCTCACTATCACAATCCACCCCCTTCGTGGCCCAGTGTCCTCACTATCACAATCCACCCCCTTCGTGGCTCAGTCCTCACTATCACAATCCACCCCCTTCGTGGCCCAGTCCTCACTATCACAATCCACCCCCTTCGTGGCCCAATGTCCATTCCTCTCTCCAACTAATATGGGATCTCACAATCCACTCCCTTCGTGGCCCAGTGTCCTCACTATCACAATCCACTCCCTTCGTGGCCCAGTGTCCTCACTATCACAATCCACCCCCTTCGTGGCCCAGTGTCCTCGCTGGCACACCGCTTGGTGTCTGAGCGTGATACTATTTGTAACAATTTGTAACCGCCCAAGTCTACCCCTAGCACACACGTTTTAAAAACTTGAGGAGAAGCTTGGAAGGGAAAGCCCAAAGAAAAGAAAACATATCTATGACATTAAGAAATGCAATCTCAATTCACTAAGGTTAAAGAGAACATTTTAACCACATGACTAACGAAGTTCTATGGACGGGAAAAACAGGGCAGCAAATGTGATAGAGCTGAAGAAATTGGGAAACAAAACAGAACAGAAAACTCATCCTAATGAATATCTTTTTGGTATCTCAGCGGAAGGGCCGAGTCTAACGAGACGATGATGATGCAAGGGCTGATGAATCCATCCCCAGAGAAGAATGGCGTAAGGTTGGCGCTTTTGATCTGTGCCTGCCTTTGTGTGCAACACTTGCACTACTCCTGTGCCCACTGATGGAAGATGATGATGATGCTATATGGCTCGTTTTCCTTGATGTTCTTCTATGAGAACACCAACTACCGTTCCCTAGTGCAGCTTTGGCAACGCGGTCAGTTGCGACTTCTCGAGCTCTCTGTGCTTTGATGGCCTGCTTGTTTAGATAAACAAGACTTGGAAGAAGGCCAACTACTGCCTTGCGTAGCTGGTCGTCGCTCACATTACTTTGAATTGGATTCCCCAACAGATTAAGAGCTTGAAGAGAGTTGTAGTTGGCAACAAGTTGGGCCAGAGCTTTGTTTGTTGAAATCTTGTTGAAGCTTAGGTCGAGAACCGTGAGCTTCAAGAGTCGATGCAGTCCATCAACATCACTAATCTTGTTGCCAGCAAGATAGAGTTCCTTAATAATCGCACAGTTTGACAACCCTGGTGTACATTTCAACAAATTGCACATTCAGAATCATCAGAAATTGATAAGTTTTAGACCTTTCTATACGTTTTTCCAACAGTACCATGTCCAATGTGAGATATACGATTGTAACTCAGATCGAGTATCCGAAGTCGTGCTAATTCTTTGAGTCCTTCAATGGCACTGATCTTGTTCCTGGACAAGTTGAGAGTATGCAATCCCTTGGGCAGTGATCCAGGGTTAATGTGATCTGGCAACCAACCAACCAACCATGTAAGTGGCAAGAATAGTGCTATGCCAAACATTTGGAGATATAAGAAGGAATTACCTATGAGATTTCCAGACAAGTTGACAGATCTAAGACCGGATAGGTGCGAGATTGTGGGTATGGCTTTTAAGCCAATGCCAGAGATGTGAGCCACGGTTGAGGAAGAATTGAGCGACCCAATGATGCTATTGGCATACAAAATCTCTTCTGTCAGATTGGGTTCTCCACGTCGGGGTGTGTGAGTTGCAGTTCGCTCTGGAGTTCGCGGGAAGAAAGTATCTGAATCATTGTCATCCCCGACCACGTCAATTGAAAGACAGGGTTCTAGTTGAAGTTCCTTCACCCACTCATCCACTCTTCTTAGGGAAGAAGATGATTCTGCTGAAAATGCAACCCACTGGTTTTGTGGCCATAAACCAGAAACTCCAATACACACATTCTCCCGATCCTGATCATCGCTTTTGTTGTTTTCGGGACATTCTCCTGATCCAGGTGATTCCATTATACTCTTCCCCGCTGCTCTGTTCAGCTCGAGATTGTCAGAGCAATACCCACCTTGCTGGTTGAAAGCAGAGCTGGTGGGAAGAGCCTTGGTATTGGTAGTCCACGGCTTTTGTAGGTTTCTATGGCTCCACAGGAACAACTTCCACCACAATCTCCTGCTTCTGGAAGGTAGAATCTGGCTTGAAGAACGCTTCTTCAACATCACTTTATCAGCACTGTGATGAGTCATTACAGACCCTGGACTCCCCGGATCAACATAGTTCCTCATTTCGTCTGCCAATTCTTGCAGTTTTTCGAAAGACTGAGACATCGGAGGAGGCAACTGATGAGGAGATAAGTTTCTAAGCACATCCCTGCTTTCCAGATTAGAACATGAGCGTCTAAGTCTAGGTAATGCCCAAGATACTGGCTTACCAATTCCAGGATCACTAACATGTCCACTTTGGATTGTATCAACCCCTTCAATAATGATCTTATCAAATTGTTTTCCCAATGAACTTGGAAATTGAAACTCAAATTCTTCTCCACACGTGTCTTGAGCAGGGAGATCAAAGTCAGAAGGGTTCCGCTTGATCGAGTTGTCATCTCGCTCATCCTCCCCTTCATATGCTGGTTCTACTGCTCCTCCTGCTACAGAACTCTCATGA

mRNA sequence

ATGAGCGGAAGGGCCGAGTCTAACGAGACGATGATGATGCAAGGGCTGATGAATCCATCCCCAGAGAAGAATGGCGTCGAGAACCGTGAGCTTCAAGAGTCGATGCAGTCCATCAACATCACTAATCTTGTTGCCAGCAAGATAGAGTTCCTTAATAATCGCACATTCGCTCTGGAGTTCGCGGGAAGAAAGTATCTGAATCATTGTCATCCCCGACCACGTCAATTGAAAGACAGGGTTCTAGTTGAAGTTCCTTCACCCACTCATCCACTCTTCTTAGGGAAGAAGATGATTCTGCTGAAAATGCAACCCACTGGTTTTGTGGCCATAAACCAGAAACTCCAATACACACATTCTCCCGATCCTGATCATCGCTTTTGTTGTTTTCGGGACATTCTCCTGATCCAGCTCGAGATTGTCAGAGCAATACCCACCTTGCTGGTTGAAAGCAGAGCTGGTGGGAAGAGCCTTGGTTTCTATGGCTCCACAGGAACAACTTCCACCACAATCTCCTGCTTCTGGAAGGTAGAATCTGGCTTGAAGAACGCTTCTTCAACATCACTTTATCAGCACTGTGATGAGTCATTACAGACCCTGGACTCCCCGGATCAACATAGTTCCTCATTTCGTCTGCCAATTCTTGCAGTTTTTCGAAAGACTGAGACATCGGAGGAGGCAACTGATGAGGAGATAAGGAGATCAAAGTCAGAAGGGTTCCGCTTGATCGAGTTGTCATCTCGCTCATCCTCCCCTTCATATGCTGGTTCTACTGCTCCTCCTGCTACAGAACTCTCATGA

Coding sequence (CDS)

ATGAGCGGAAGGGCCGAGTCTAACGAGACGATGATGATGCAAGGGCTGATGAATCCATCCCCAGAGAAGAATGGCGTCGAGAACCGTGAGCTTCAAGAGTCGATGCAGTCCATCAACATCACTAATCTTGTTGCCAGCAAGATAGAGTTCCTTAATAATCGCACATTCGCTCTGGAGTTCGCGGGAAGAAAGTATCTGAATCATTGTCATCCCCGACCACGTCAATTGAAAGACAGGGTTCTAGTTGAAGTTCCTTCACCCACTCATCCACTCTTCTTAGGGAAGAAGATGATTCTGCTGAAAATGCAACCCACTGGTTTTGTGGCCATAAACCAGAAACTCCAATACACACATTCTCCCGATCCTGATCATCGCTTTTGTTGTTTTCGGGACATTCTCCTGATCCAGCTCGAGATTGTCAGAGCAATACCCACCTTGCTGGTTGAAAGCAGAGCTGGTGGGAAGAGCCTTGGTTTCTATGGCTCCACAGGAACAACTTCCACCACAATCTCCTGCTTCTGGAAGGTAGAATCTGGCTTGAAGAACGCTTCTTCAACATCACTTTATCAGCACTGTGATGAGTCATTACAGACCCTGGACTCCCCGGATCAACATAGTTCCTCATTTCGTCTGCCAATTCTTGCAGTTTTTCGAAAGACTGAGACATCGGAGGAGGCAACTGATGAGGAGATAAGGAGATCAAAGTCAGAAGGGTTCCGCTTGATCGAGTTGTCATCTCGCTCATCCTCCCCTTCATATGCTGGTTCTACTGCTCCTCCTGCTACAGAACTCTCATGA

Protein sequence

MSGRAESNETMMMQGLMNPSPEKNGVENRELQESMQSINITNLVASKIEFLNNRTFALEFAGRKYLNHCHPRPRQLKDRVLVEVPSPTHPLFLGKKMILLKMQPTGFVAINQKLQYTHSPDPDHRFCCFRDILLIQLEIVRAIPTLLVESRAGGKSLGFYGSTGTTSTTISCFWKVESGLKNASSTSLYQHCDESLQTLDSPDQHSSSFRLPILAVFRKTETSEEATDEEIRRSKSEGFRLIELSSRSSSPSYAGSTAPPATELS
Homology
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BLAST of CmoCh09G005490 vs. NCBI nr
Match: KAG7024547.1 (hypothetical protein SDJN02_13363, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 375.9 bits (964), Expect = 2.8e-100
Identity = 214/302 (70.86%), Postives = 228/302 (75.50%), Query Frame = 0 

Query: 1   MSGRAESNETMMMQGLMNPSPEKNGVE-NRELQESMQSIN-------------------- 60
           MSGRAESNE MMMQGLMNPSPEKNGV  N   Q + Q  N                    
Sbjct: 1   MSGRAESNEMMMMQGLMNPSPEKNGVRVNVIWQPTNQPTNHVSGKNSAMPNIWRYKKELP 60

Query: 61  ------ITNLVASKIEFLN--------NRTFALEFAGRKYLNHCHPRPRQLKDRVLVEVP 120
                 +T+L   + E ++           FALEFAGRKYLNHC PRPRQLKDRVLVEV 
Sbjct: 61  MRFPDKLTDLRPDRCEIVDWVLHVGVCELQFALEFAGRKYLNHCQPRPRQLKDRVLVEVS 120

Query: 121 SPTHPLFLGKKMILLKMQPTGFVAINQKLQYTHSPDPDHRFCCFRDILLIQLEIVRAIPT 180
           SPTHPLFLGKKMILLKMQPTGFVAI+QKLQYTHSPDPDHR CCFR ILLIQ+  + + P 
Sbjct: 121 SPTHPLFLGKKMILLKMQPTGFVAISQKLQYTHSPDPDHRCCCFRGILLIQVIPLYSSPL 180

Query: 181 LLV--ESRAGGKSLGFYGSTGTTSTTISCFWKVESGLKNASSTSLYQHCDESLQTLDSPD 240
           L    + ++     GFYGSTGTTSTTISCFWKVESGLKNASSTSLYQHC+ESLQTLD PD
Sbjct: 181 LCSARDCQSNTHLAGFYGSTGTTSTTISCFWKVESGLKNASSTSLYQHCEESLQTLDCPD 240

Query: 241 QHSSSFRLPILAVFRKTETSEEATDEEIRRSKSEGFRLIELSSRSSSPSYAGSTAPPATE 266
           QHSSSFRLPILAVFRKTET EEATDEEIRRSKSEGFRLIEL SRSSSPSYAGSTAPPATE
Sbjct: 241 QHSSSFRLPILAVFRKTETLEEATDEEIRRSKSEGFRLIEL-SRSSSPSYAGSTAPPATE 300

The following BLAST results are available for this feature:
BLAST of CmoCh09G005490 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh09G005490 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh09G005490 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7024547.12.8e-10070.86hypothetical protein SDJN02_13363, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of CmoCh09G005490 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..24
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 244..265
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..17

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh09G005490.1CmoCh09G005490.1mRNA