CmoCh09G005400 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh09G005400
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Pentatricopeptide repeat-containing protein
Location	Cmo_Chr09: 2565176 .. 2567869 (+)
RNA-Seq Expression	CmoCh09G005400
Synteny	CmoCh09G005400

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATAGCGAACTCCGGAGTGAACTATGGCGGTAGCGCGAAACAGGGTTCTGGCATTGGCCAAAGGCGGTTCCTCCAGGGTTCCGCTACGGTTACAGGAACCTCATTATCGATGTATTTGCCGGAGATTTGTTTCTACTGATCCGTCGAATTCGATTTTGAATCCTCTGGTTCTCAGGTTGATTCAGGAGCCAAGTTCGTCTGTGAAATCCGTGCTTGATTCGCCGGAAAATGCTTTTCTCGGCAGTTCGTGGCTTTCCTGGAAAGCTCTTGTTACGTCTCTTATATCTTCTTCGTCGCCTAAGAAGGCTCAGCTGGTAACGCTTCTGGCCCTCTCTTTTTCCTCCATTGTTGTCTGTTTAGTTGGTTGTTGAATGGATCTAGGGAAAGAAAAGCTATGGATTCTGTGTGTCTGTAGGTTGTATCTGAAATGGAGGGATTATGTATCTTTGTTCTTCTTTGAATACGAAACAGTAAATGAAAGTAATAAATAAAGAGAATTACAATGGATCAATTGGTGGGACGAGCTTGATAGAGAAGATTCGTTGGGTTCTTTCAAATTATAATTCAAAACGAGAAGATTTAACAGCGAAACCACGAAGTATTTGATTTTGGAGCCAATTATGGACTGATAAACAATTAAGCACAACCCTGGCCTGAATATCTTGTAAAACAAAAGCAGCAAACGATTTGGATAGGGAGTCCATATAAGAAAGCTTTCAGGCTTGCAAATTCAAAGAGCTGAAGCCAAATAAAAGATTTGGAGGGATTATGTAACTTGATTGGGACTTGGGAAATGTTTGAGCGTGCTTTTCAAATTATTCAAATTACTTTCTCTATCTTCAAAATCACTTTGAAAACATGCTTTTAATCCTTCACAATTTTGCTGATATGAAATTTGATCTTTTGAATGATTAAAAGCATGTGTTAGCATGATGTTCAACATAACAAAAGTAACTTTAACCATCTCAAATCTTTTAACTGCCCAAACCCACCACTAACCGATATTGTCTGCTTTGACCCGTTATGTATAGCCGTCAATCTCATGATTTTAAAACGCGTCTATTAGGGAGAGATTCCCACACCCTTATAAGGAATGCTTCGTTCCTCTCTCGAACCGATATGGGATCTCACAATCCATCAACGCCTCTACTGGGGAGATGTTTCCACACCCTTATAAAGAATGATTCGTTGCTCTCTCCAATTGATATGAGATCTCATAATCCACCCCTTGGGGGTTGCCATACCGCTCGATGTTTGGCTCTAATATCATTTGTAACAACCCAAGCCCACCGCAAGTAGATATTGCCCTCTTTGGACTTTCCCTTCTAGCCTTCCCTTGGAGTTTTAAAACGCGTCTACTAGGGAGAGGTTTCGACACCCTTATAAGGAATGTTTTGTTCCCATTTCCAACCAATGTGGGGTTTCACAAATTCACTCCCAAACATGCCCTTAGATTCATCCCGATCAATTAAGTAATCTTCGGAAGAAACAGGTTTCATGTTTCAGCCGTCTTTTCTTTCAATGACTTTAGTGATTGGCAAGTTTATGTTTTAGGGATCATGAGTATCTCGTGATTAGCCTTTTTTGACTTTTATCAGGCTTTGGAATGGAGATTGGAGAAAATGAGCAAAGAAAACGAGAGGGATCCCGACTTTTACATCGACCTAATACGTCTTTGCGGAGAGCTTCAGAATGTCCCTCTTGCAATGCGTGTCTTCACAGCTATGGAATTTCAAGGAGTTCAACCCACGGTGACTGCTTTCAATTCACTTATAGAGGTTTGTATATCTTCGCATAACATGATAACTGCCTTCAGCATGTTTGAAATAATGAAAAATTCTGAAAGTTCTAAACCCAATGCTGACACTTTCTTCTATTTCATTTCGGCATTCGCCAAACGACACGATGTAAATTCCATGGAAGCATGGTATTCAGCCAACAGAGCGTTTGAATTCTCTGCTGATCTTCGAACCTATGAAGCTCTTATACATGGTAGTGTGAAATCAAAGTGCTTTGACTTTGCTGTTAGATGTTTTGATGAAATGATGTTATCTGGCATTGTGCCCAACGCAATCATATTGGATAATATGCTTGAAGGGTTCTGTAAAAGGAAAGATTTGGATGAACTCAAGAAGTTCTTAACTGTTGTGCTTGACAAAGGATGGGAGATCAATTGGAATGTGGTAGAGAAATTCATTCCGATATGGTTTGAATCTGGGAGGCGGAAGGGATGGAGGAGATCCTTACCAAGCTGAACGAAGCAGCTCGACTGTAAAGAAGAGGAGCTGATCATCCAGCCGCTTTACCGAGTTTAGCAGCTTTACTGGGAGTTCATTTTTCTTTCATTTTCTTCTTCTGGCTTGAGAGAGAGAAAGAAAATTGAATTCGATTCTCAATAGCATATCATCGTAAAGAAACGGTAGAATGATAACAACGTGTATGTCCCATGTTCAAACGATTGGATGGAACTCTTTAAACATGGCTTGCCATTTGAATGGGCAGATGGGGTCGTCAAGGTAACTTTTTTGTTACAGGTGAAGCTTATAATAGACTAGACTCATTTATTGATTGCACGAAAGGCAAATATTTGCACACGTTTGTTGTAATAGCTCAAGTTCACTATAGCAGATATTGTTCGTTTTAGTTTGTTACGTATCACAATTTCAAAACACATATGTTAGGGAAAGGTTTTCAC

mRNA sequence

ATAGCGAACTCCGGAGTGAACTATGGCGGTAGCGCGAAACAGGGTTCTGGCATTGGCCAAAGGCGGTTCCTCCAGGGTTCCGCTACGGTTACAGGAACCTCATTATCGATGTATTTGCCGGAGATTTGTTTCTACTGATCCGTCGAATTCGATTTTGAATCCTCTGGTTCTCAGGTTGATTCAGGAGCCAAGTTCGTCTGTGAAATCCGTGCTTGATTCGCCGGAAAATGCTTTTCTCGGCAGTTCGTGGCTTTCCTGGAAAGCTCTTGTTACGTCTCTTATATCTTCTTCGTCGCCTAAGAAGGCTCAGCTGGCTTTGGAATGGAGATTGGAGAAAATGAGCAAAGAAAACGAGAGGGATCCCGACTTTTACATCGACCTAATACGTCTTTGCGGAGAGCTTCAGAATGTCCCTCTTGCAATGCGTGTCTTCACAGCTATGGAATTTCAAGGAGTTCAACCCACGGTGACTGCTTTCAATTCACTTATAGAGGTTTGTATATCTTCGCATAACATGATAACTGCCTTCAGCATGTTTGAAATAATGAAAAATTCTGAAAGTTCTAAACCCAATGCTGACACTTTCTTCTATTTCATTTCGGCATTCGCCAAACGACACGATGTAAATTCCATGGAAGCATGGTATTCAGCCAACAGAGCGTTTGAATTCTCTGCTGATCTTCGAACCTATGAAGCTCTTATACATGGTAGTGTGAAATCAAAGTGCTTTGACTTTGCTGTTAGATGTTTTGATGAAATGATGTTATCTGGCATTGTGCCCAACGCAATCATATTGGATAATATGCTTGAAGGGTTCTGTAAAAGGAAAGATTTGGATGAACTCAAGAAGTTCTTAACTGTTGTGCTTGACAAAGGATGGGAGATCAATTGGAATGTGGTAGAGAAATTCATTCCGATATGGTTTGAATCTGGGAGGCGGAAGGGATGGAGGAGATCCTTACCAAGCTGAACGAAGCAGCTCGACTGTAAAGAAGAGGAGCTGATCATCCAGCCGCTTTACCGAGTTTAGCAGCTTTACTGGGAGTTCATTTTTCTTTCATTTTCTTCTTCTGGCTTGAGAGAGAGAAAGAAAATTGAATTCGATTCTCAATAGCATATCATCGTAAAGAAACGGTAGAATGATAACAACGTGTATGTCCCATGTTCAAACGATTGGATGGAACTCTTTAAACATGGCTTGCCATTTGAATGGGCAGATGGGGTCGTCAAGGTAACTTTTTTGTTACAGGTGAAGCTTATAATAGACTAGACTCATTTATTGATTGCACGAAAGGCAAATATTTGCACACGTTTGTTGTAATAGCTCAAGTTCACTATAGCAGATATTGTTCGTTTTAGTTTGTTACGTATCACAATTTCAAAACACATATGTTAGGGAAAGGTTTTCAC

Coding sequence (CDS)

ATGGCGGTAGCGCGAAACAGGGTTCTGGCATTGGCCAAAGGCGGTTCCTCCAGGGTTCCGCTACGGTTACAGGAACCTCATTATCGATGTATTTGCCGGAGATTTGTTTCTACTGATCCGTCGAATTCGATTTTGAATCCTCTGGTTCTCAGGTTGATTCAGGAGCCAAGTTCGTCTGTGAAATCCGTGCTTGATTCGCCGGAAAATGCTTTTCTCGGCAGTTCGTGGCTTTCCTGGAAAGCTCTTGTTACGTCTCTTATATCTTCTTCGTCGCCTAAGAAGGCTCAGCTGGCTTTGGAATGGAGATTGGAGAAAATGAGCAAAGAAAACGAGAGGGATCCCGACTTTTACATCGACCTAATACGTCTTTGCGGAGAGCTTCAGAATGTCCCTCTTGCAATGCGTGTCTTCACAGCTATGGAATTTCAAGGAGTTCAACCCACGGTGACTGCTTTCAATTCACTTATAGAGGTTTGTATATCTTCGCATAACATGATAACTGCCTTCAGCATGTTTGAAATAATGAAAAATTCTGAAAGTTCTAAACCCAATGCTGACACTTTCTTCTATTTCATTTCGGCATTCGCCAAACGACACGATGTAAATTCCATGGAAGCATGGTATTCAGCCAACAGAGCGTTTGAATTCTCTGCTGATCTTCGAACCTATGAAGCTCTTATACATGGTAGTGTGAAATCAAAGTGCTTTGACTTTGCTGTTAGATGTTTTGATGAAATGATGTTATCTGGCATTGTGCCCAACGCAATCATATTGGATAATATGCTTGAAGGGTTCTGTAAAAGGAAAGATTTGGATGAACTCAAGAAGTTCTTAACTGTTGTGCTTGACAAAGGATGGGAGATCAATTGGAATGTGGTAGAGAAATTCATTCCGATATGGTTTGAATCTGGGAGGCGGAAGGGATGGAGGAGATCCTTACCAAGCTGA

Protein sequence

MAVARNRVLALAKGGSSRVPLRLQEPHYRCICRRFVSTDPSNSILNPLVLRLIQEPSSSVKSVLDSPENAFLGSSWLSWKALVTSLISSSSPKKAQLALEWRLEKMSKENERDPDFYIDLIRLCGELQNVPLAMRVFTAMEFQGVQPTVTAFNSLIEVCISSHNMITAFSMFEIMKNSESSKPNADTFFYFISAFAKRHDVNSMEAWYSANRAFEFSADLRTYEALIHGSVKSKCFDFAVRCFDEMMLSGIVPNAIILDNMLEGFCKRKDLDELKKFLTVVLDKGWEINWNVVEKFIPIWFESGRRKGWRRSLPS

Homology

[Close]

BLAST of CmoCh09G005400 vs. ExPASy Swiss-Prot
Match: Q9M302 (Pentatricopeptide repeat-containing protein At3g48810 OS=Arabidopsis thaliana OX=3702 GN=At3g48810 PE=2 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 1.9e-10
Identity = 51/227 (22.47%), Postives = 91/227 (40.09%), Query Frame = 0


Query: 79  WKALVTSLISSSSPKKAQLALEWRLEKMSKENERDPDFYIDLIRLCGELQNVPLAMRVFT 138
           + AL+  L      K    A E   E + K    +   Y  LI +      + LA    T
Sbjct: 249 YNALINGLCKEHDYKG---AFELMREMVEKGISPNVISYSTLINVLCNSGQIELAFSFLT 308

Query: 139 AMEFQGVQPTVTAFNSLIEVCISSHNMITAFSMFEIMKNSESSKPNADTFFYFISAFAKR 198
            M  +G  P +   +SL++ C        A  ++  M      +PN   +   +  F   
Sbjct: 309 QMLKRGCHPNIYTLSSLVKGCFLRGTTFDALDLWNQMIRGFGLQPNVVAYNTLVQGFCSH 368

Query: 199 HDVNSMEAWYSANRAFEFSADLRTYEALIHGSVKSKCFDFAVRCFDEMMLSGIVPNAIIL 258
            ++    + +S       S ++RTY +LI+G  K    D AV  +++M+ SG  PN ++ 
Sbjct: 369 GNIVKAVSVFSHMEEIGCSPNIRTYGSLINGFAKRGSLDGAVYIWNKMLTSGCCPNVVVY 428

Query: 259 DNMLEGFCKRKDLDELKKFLTVVLDKGWEINWNVVEKFIPIWFESGR 306
            NM+E  C+     E +  + ++  +    +      FI    ++GR
Sbjct: 429 TNMVEALCRHSKFKEAESLIEIMSKENCAPSVPTFNAFIKGLCDAGR 472

[Close]

BLAST of CmoCh09G005400 vs. ExPASy Swiss-Prot
Match: Q9SH26 (Pentatricopeptide repeat-containing protein At1g63400 OS=Arabidopsis thaliana OX=3702 GN=At1g63400 PE=2 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 4.3e-10
Identity = 43/141 (30.50%), Postives = 64/141 (45.39%), Query Frame = 0


Query: 133 AMRVFTAMEFQGVQPTVTAFNSLIEVCISSHNMITAFSMFEIMKNSESSKPNADTFFYFI 192
           A+ +FT ME +GV+P V  ++SLI  C+ ++   +  S            PN  TF   I
Sbjct: 279 ALNLFTEMENKGVRPNVITYSSLIS-CLCNYERWSDASRLLSDMIERKINPNVVTFNALI 338

Query: 193 SAFAKRHDVNSMEAWYSANRAFEFSADLRTYEALIHGSVKSKCFDFAVRCFDEMMLSGIV 252
            AF K   +   E  Y          D+ TY +LI+G       D A   F+ M+     
Sbjct: 339 DAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCF 398

Query: 253 PNAIILDNMLEGFCKRKDLDE 274
           PN +  + ++ GFCK K +DE
Sbjct: 399 PNVVTYNTLINGFCKAKRIDE 418

[Close]

BLAST of CmoCh09G005400 vs. ExPASy Swiss-Prot
Match: Q9FLL3 (Pentatricopeptide repeat-containing protein At5g41170, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At5g41170 PE=2 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 5.6e-10
Identity = 45/157 (28.66%), Postives = 70/157 (44.59%), Query Frame = 0


Query: 129 NVPLAMRVFTAMEFQGVQPTVTAFNSLIEVCISSHNMITAFSMFEIMKNSESSKPNADTF 188
           +V  A+ +F  ME  G++P V  + SL+    +S     A S+   M      KP+  TF
Sbjct: 192 HVNYALSLFDQMENYGIRPDVVMYTSLVNGLCNSGRWRDADSLLRGM-TKRKIKPDVITF 251

Query: 189 FYFISAFAKRHDVNSMEAWYSANRAFEFSADLRTYEALIHGSVKSKCFDFAVRCFDEMML 248
              I AF K       E  Y+       + ++ TY +LI+G     C D A + F  M  
Sbjct: 252 NALIDAFVKEGKFLDAEELYNEMIRMSIAPNIFTYTSLINGFCMEGCVDEARQMFYLMET 311

Query: 249 SGIVPNAIILDNMLEGFCKRKDLDELKKFLTVVLDKG 286
            G  P+ +   +++ GFCK K +D+  K    +  KG
Sbjct: 312 KGCFPDVVAYTSLINGFCKCKKVDDAMKIFYEMSQKG 347

[Close]

BLAST of CmoCh09G005400 vs. ExPASy Swiss-Prot
Match: Q9ZUU3 (Pentatricopeptide repeat-containing protein At2g37230 OS=Arabidopsis thaliana OX=3702 GN=At2g37230 PE=2 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 8.1e-09
Identity = 47/174 (27.01%), Postives = 75/174 (43.10%), Query Frame = 0


Query: 111 ERDPDFYIDLIRLCGELQNVPLAMRVFTAMEFQGVQPTVTAFNSLIEVCISSHNMITAFS 170
           ER    Y  L ++        +A R F  M  +GV+PT   +N ++     S  + TA  
Sbjct: 217 ERTIKSYNSLFKVILRRGRYMMAKRYFNKMVSEGVEPTRHTYNLMLWGFFLSLRLETALR 276

Query: 171 MFEIMKNSESSKPNADTFFYFISAFAKRHDVNSMEAWYSANRAFEFSADLRTYEALIHGS 230
            FE MK +    P+  TF   I+ F +   ++  E  +   +  +    + +Y  +I G 
Sbjct: 277 FFEDMK-TRGISPDDATFNTMINGFCRFKKMDEAEKLFVEMKGNKIGPSVVSYTTMIKGY 336

Query: 231 VKSKCFDFAVRCFDEMMLSGIVPNAIILDNMLEGFCKRKDLDELKKFLTVVLDK 285
           +     D  +R F+EM  SGI PNA     +L G C    + E K  L  ++ K
Sbjct: 337 LAVDRVDDGLRIFEEMRSSGIEPNATTYSTLLPGLCDAGKMVEAKNILKNMMAK 389

[Close]

BLAST of CmoCh09G005400 vs. ExPASy Swiss-Prot
Match: Q9FFE3 (Pentatricopeptide repeat-containing protein At5g16420, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At5g16420 PE=2 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 8.1e-09
Identity = 41/153 (26.80%), Postives = 71/153 (46.41%), Query Frame = 0


Query: 115 DFYIDLIRLCGELQNVPLAMRVFTAMEFQGVQPTVTAFNSLIEVCISSHNMITAFSMFEI 174
           + +IDL+R  G       +MR+F  +   GV+ +V + N+L+ V I +       +MF+ 
Sbjct: 121 NLFIDLLRNYGLAGRYESSMRIFLRIPDFGVKRSVRSLNTLLNVLIQNQRFDLVHAMFKN 180

Query: 175 MKNSESSKPNADTFFYFISAFAKRHDVNSMEAWYSANRAFEFSADLRTYEALIHGSVKSK 234
            K S    PN  T    + A  K++D+ S         +     +L TY  ++ G V   
Sbjct: 181 SKESFGITPNIFTCNLLVKALCKKNDIESAYKVLDEIPSMGLVPNLVTYTTILGGYVARG 240

Query: 235 CFDFAVRCFDEMMLSGIVPNAIILDNMLEGFCK 268
             + A R  +EM+  G  P+A     +++G+CK
Sbjct: 241 DMESAKRVLEEMLDRGWYPDATTYTVLMDGYCK 273

[Close]

BLAST of CmoCh09G005400 vs. ExPASy TrEMBL
Match: A0A6J1FC94 (pentatricopeptide repeat-containing protein At1g63080, mitochondrial-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111442788 PE=4 SV=1)

HSP 1 Score: 631.7 bits (1628), Expect = 1.6e-177
Identity = 315/315 (100.00%), Postives = 315/315 (100.00%), Query Frame = 0


Query: 1   MAVARNRVLALAKGGSSRVPLRLQEPHYRCICRRFVSTDPSNSILNPLVLRLIQEPSSSV 60
           MAVARNRVLALAKGGSSRVPLRLQEPHYRCICRRFVSTDPSNSILNPLVLRLIQEPSSSV
Sbjct: 1   MAVARNRVLALAKGGSSRVPLRLQEPHYRCICRRFVSTDPSNSILNPLVLRLIQEPSSSV 60

Query: 61  KSVLDSPENAFLGSSWLSWKALVTSLISSSSPKKAQLALEWRLEKMSKENERDPDFYIDL 120
           KSVLDSPENAFLGSSWLSWKALVTSLISSSSPKKAQLALEWRLEKMSKENERDPDFYIDL
Sbjct: 61  KSVLDSPENAFLGSSWLSWKALVTSLISSSSPKKAQLALEWRLEKMSKENERDPDFYIDL 120

Query: 121 IRLCGELQNVPLAMRVFTAMEFQGVQPTVTAFNSLIEVCISSHNMITAFSMFEIMKNSES 180
           IRLCGELQNVPLAMRVFTAMEFQGVQPTVTAFNSLIEVCISSHNMITAFSMFEIMKNSES
Sbjct: 121 IRLCGELQNVPLAMRVFTAMEFQGVQPTVTAFNSLIEVCISSHNMITAFSMFEIMKNSES 180

Query: 181 SKPNADTFFYFISAFAKRHDVNSMEAWYSANRAFEFSADLRTYEALIHGSVKSKCFDFAV 240
           SKPNADTFFYFISAFAKRHDVNSMEAWYSANRAFEFSADLRTYEALIHGSVKSKCFDFAV
Sbjct: 181 SKPNADTFFYFISAFAKRHDVNSMEAWYSANRAFEFSADLRTYEALIHGSVKSKCFDFAV 240

Query: 241 RCFDEMMLSGIVPNAIILDNMLEGFCKRKDLDELKKFLTVVLDKGWEINWNVVEKFIPIW 300
           RCFDEMMLSGIVPNAIILDNMLEGFCKRKDLDELKKFLTVVLDKGWEINWNVVEKFIPIW
Sbjct: 241 RCFDEMMLSGIVPNAIILDNMLEGFCKRKDLDELKKFLTVVLDKGWEINWNVVEKFIPIW 300

Query: 301 FESGRRKGWRRSLPS 316
           FESGRRKGWRRSLPS
Sbjct: 301 FESGRRKGWRRSLPS 315

[Close]

BLAST of CmoCh09G005400 vs. ExPASy TrEMBL
Match: A0A6J1II25 (pentatricopeptide repeat-containing protein At2g37230-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111476476 PE=4 SV=1)

HSP 1 Score: 582.4 bits (1500), Expect = 1.1e-162
Identity = 294/313 (93.93%), Postives = 298/313 (95.21%), Query Frame = 0


Query: 1   MAVARNRVLALAKGGSSRVPLRLQEPHYRCICRRFVSTDPSNSILNPLVLRLIQEPSSSV 60
           MAVARNRVLALAKGGSSR+PLRLQE HYRCICRRFVSTDPSNSILNPLVLRLIQEPSSSV
Sbjct: 1   MAVARNRVLALAKGGSSRIPLRLQEAHYRCICRRFVSTDPSNSILNPLVLRLIQEPSSSV 60

Query: 61  KSVLDSPENAFLGSSWLSWKALVTSLISSSSPKKAQLALEWRLEKMSKENERDPDFYIDL 120
           KSVLDSPEN FLGSS LSWKALVTSLISSSSPKKAQLALEWRLEKM+KENERDPDFYIDL
Sbjct: 61  KSVLDSPENDFLGSSRLSWKALVTSLISSSSPKKAQLALEWRLEKMNKENERDPDFYIDL 120

Query: 121 IRLCGELQNVPLAMRVFTAMEFQGVQPTVTAFNSLIEVCISSHNMITAFSMFEIMKNSES 180
           IRLCGELQNVPLAMRVFTAMEFQGV+PTVTAFNSLIEVCISSHNMITAFSMFEIMKNSES
Sbjct: 121 IRLCGELQNVPLAMRVFTAMEFQGVKPTVTAFNSLIEVCISSHNMITAFSMFEIMKNSES 180

Query: 181 SKPNADTFFYFISAFAKRHDVNSMEAWYSANRAFEFSADLRTYEALIHGSVKSKCFDFAV 240
            KPNADTFFYFISAFAK  DVNSMEAWYSA RAFEFSADLRTYEALIHGSV SKCFDFAV
Sbjct: 181 FKPNADTFFYFISAFAKLRDVNSMEAWYSAKRAFEFSADLRTYEALIHGSVNSKCFDFAV 240

Query: 241 RCFDEMMLSGIVPNAIILDNMLEGFCKRKDLDELKKFLTVVLDKGWEINWNVVEKFIPIW 300
           RCFDEMMLSGIVPNAIILDNMLEGFCKRKDLDELKKFLTVVLDKGWEI WNVVEKFIPIW
Sbjct: 241 RCFDEMMLSGIVPNAIILDNMLEGFCKRKDLDELKKFLTVVLDKGWEIKWNVVEKFIPIW 300

Query: 301 FESGRRKGWRRSL 314
           FESG  +G    L
Sbjct: 301 FESGEAEGMEEIL 313

[Close]

BLAST of CmoCh09G005400 vs. ExPASy TrEMBL
Match: A0A5D3E5Z9 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G006320 PE=3 SV=1)

HSP 1 Score: 462.6 bits (1189), Expect = 1.3e-126
Identity = 232/313 (74.12%), Postives = 262/313 (83.71%), Query Frame = 0


Query: 1   MAVARNRVLALAKGGSSRVPLRLQEPHYRCICRRFVSTDPSNSILNPLVLRLIQEPSSSV 60
           MA    RVL LA+  S  +PL+ Q+PHY  I R F STDPS SI NPL+L+L+QEP+SSV
Sbjct: 1   MASTGKRVLTLARNVSFSIPLQSQQPHYPLIFRGFFSTDPSISITNPLLLKLLQEPTSSV 60

Query: 61  KSVLDSPENAFLGSSWLSWKALVTSLISSSSPKKAQLALEWRLEKMSKENERDPDFYIDL 120
           KSVLDS EN FL SS LS   LVTSLISSS PKKAQL LEW+LEKMSK NE DPD YI+L
Sbjct: 61  KSVLDSQENGFLCSSRLSLNDLVTSLISSSKPKKAQLVLEWKLEKMSKRNESDPDLYINL 120

Query: 121 IRLCGELQNVPLAMRVFTAMEFQGVQPTVTAFNSLIEVCISSHNMITAFSMFEIMKNSES 180
           IRLCG+L++  LAMRVFT MEFQGV+PTVTAFNSLIE CISSHNMITAF +FE+MKNS++
Sbjct: 121 IRLCGKLRDSFLAMRVFTVMEFQGVKPTVTAFNSLIEACISSHNMITAFGIFEVMKNSKN 180

Query: 181 SKPNADTFFYFISAFAKRHDVNSMEAWYSANRAFEFSADLRTYEALIHGSVKSKCFDFAV 240
            KPN DTF+YFIS F+K  DVNSM+AWYSA +AFEFS DLRTYEALIHGSVKSKCFDFAV
Sbjct: 181 FKPNTDTFYYFISEFSKLRDVNSMQAWYSAKKAFEFSPDLRTYEALIHGSVKSKCFDFAV 240

Query: 241 RCFDEMMLSGIVPNAIILDNMLEGFCKRKDLDELKKFLTVVLDKGWEINWNVVEKFIPIW 300
           +CF+EMMLS IVPNAIIL+NMLEG CKRK+ DE+KKFL VVLD GWEINWNVVEKFIP+W
Sbjct: 241 KCFEEMMLSDIVPNAIILENMLEGLCKRKNFDEVKKFLNVVLDNGWEINWNVVEKFIPVW 300

Query: 301 FESGRRKGWRRSL 314
           FESG  +G +  L
Sbjct: 301 FESGELEGMKEIL 313

[Close]

BLAST of CmoCh09G005400 vs. ExPASy TrEMBL
Match: A0A1S3CS56 (pentatricopeptide repeat-containing protein At3g09060-like OS=Cucumis melo OX=3656 GN=LOC103503719 PE=3 SV=1)

HSP 1 Score: 462.6 bits (1189), Expect = 1.3e-126
Identity = 232/313 (74.12%), Postives = 262/313 (83.71%), Query Frame = 0


Query: 1   MAVARNRVLALAKGGSSRVPLRLQEPHYRCICRRFVSTDPSNSILNPLVLRLIQEPSSSV 60
           MA    RVL LA+  S  +PL+ Q+PHY  I R F STDPS SI NPL+L+L+QEP+SSV
Sbjct: 1   MASTGKRVLTLARNVSFSIPLQSQQPHYPLIFRGFFSTDPSISITNPLLLKLLQEPTSSV 60

Query: 61  KSVLDSPENAFLGSSWLSWKALVTSLISSSSPKKAQLALEWRLEKMSKENERDPDFYIDL 120
           KSVLDS EN FL SS LS   LVTSLISSS PKKAQL LEW+LEKMSK NE DPD YI+L
Sbjct: 61  KSVLDSQENGFLCSSRLSLNDLVTSLISSSKPKKAQLVLEWKLEKMSKRNESDPDLYINL 120

Query: 121 IRLCGELQNVPLAMRVFTAMEFQGVQPTVTAFNSLIEVCISSHNMITAFSMFEIMKNSES 180
           IRLCG+L++  LAMRVFT MEFQGV+PTVTAFNSLIE CISSHNMITAF +FE+MKNS++
Sbjct: 121 IRLCGKLRDSFLAMRVFTVMEFQGVKPTVTAFNSLIEACISSHNMITAFGIFEVMKNSKN 180

Query: 181 SKPNADTFFYFISAFAKRHDVNSMEAWYSANRAFEFSADLRTYEALIHGSVKSKCFDFAV 240
            KPN DTF+YFIS F+K  DVNSM+AWYSA +AFEFS DLRTYEALIHGSVKSKCFDFAV
Sbjct: 181 FKPNTDTFYYFISEFSKLRDVNSMQAWYSAKKAFEFSPDLRTYEALIHGSVKSKCFDFAV 240

Query: 241 RCFDEMMLSGIVPNAIILDNMLEGFCKRKDLDELKKFLTVVLDKGWEINWNVVEKFIPIW 300
           +CF+EMMLS IVPNAIIL+NMLEG CKRK+ DE+KKFL VVLD GWEINWNVVEKFIP+W
Sbjct: 241 KCFEEMMLSDIVPNAIILENMLEGLCKRKNFDEVKKFLNVVLDNGWEINWNVVEKFIPVW 300

Query: 301 FESGRRKGWRRSL 314
           FESG  +G +  L
Sbjct: 301 FESGELEGMKEIL 313

[Close]

BLAST of CmoCh09G005400 vs. ExPASy TrEMBL
Match: A0A0A0LJI4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G889090 PE=4 SV=1)

HSP 1 Score: 456.4 bits (1173), Expect = 9.3e-125
Identity = 231/313 (73.80%), Postives = 262/313 (83.71%), Query Frame = 0


Query: 1   MAVARNRVLALAKGGSSRVPLRLQEPHYRCICRRFVSTDPSNSILNPLVLRLIQEPSSSV 60
           MA    RVLALA+  S  VPL+ Q+PHY  I R F STDPS SI NPL+L+L+QEP+SSV
Sbjct: 1   MASTGKRVLALARNVSLSVPLQSQQPHYPLIFRGFFSTDPSISITNPLLLKLLQEPTSSV 60

Query: 61  KSVLDSPENAFLGSSWLSWKALVTSLISSSSPKKAQLALEWRLEKMSKENERDPDFYIDL 120
           KSVLDS EN FL SS LS  ALVTSLISSS  KKAQL LEW+LE MSK+NERD DFYI+L
Sbjct: 61  KSVLDSQENGFLCSSRLSLNALVTSLISSSMLKKAQLVLEWKLENMSKKNERDLDFYINL 120

Query: 121 IRLCGELQNVPLAMRVFTAMEFQGVQPTVTAFNSLIEVCISSHNMITAFSMFEIMKNSES 180
           I LCG+L+N  LAMRVF  MEFQGV+PTVTAFNSLIE CISS+NMITAFS+FE+MKNS++
Sbjct: 121 ICLCGKLRNSSLAMRVFNVMEFQGVKPTVTAFNSLIEACISSNNMITAFSIFEVMKNSKN 180

Query: 181 SKPNADTFFYFISAFAKRHDVNSMEAWYSANRAFEFSADLRTYEALIHGSVKSKCFDFAV 240
            KPN DTF+YFISAFAK HDVNSM+AWYSA +AFEFS DLRTYEALIHGSVKS CFDF V
Sbjct: 181 FKPNTDTFYYFISAFAKLHDVNSMQAWYSAKKAFEFSPDLRTYEALIHGSVKSNCFDFGV 240

Query: 241 RCFDEMMLSGIVPNAIILDNMLEGFCKRKDLDELKKFLTVVLDKGWEINWNVVEKFIPIW 300
           +CF+EM+LS IVPN IIL+NMLEG CKRK+ DE+KKFL VVLD GWEI+WNVVEKFIP+W
Sbjct: 241 KCFEEMILSDIVPNTIILENMLEGLCKRKNFDEVKKFLNVVLDNGWEIDWNVVEKFIPVW 300

Query: 301 FESGRRKGWRRSL 314
           FESG  +G +  L
Sbjct: 301 FESGELEGMKEIL 313

[Close]

BLAST of CmoCh09G005400 vs. NCBI nr
Match: XP_022936078.1 (pentatricopeptide repeat-containing protein At1g63080, mitochondrial-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 631.7 bits (1628), Expect = 3.4e-177
Identity = 315/315 (100.00%), Postives = 315/315 (100.00%), Query Frame = 0


Query: 1   MAVARNRVLALAKGGSSRVPLRLQEPHYRCICRRFVSTDPSNSILNPLVLRLIQEPSSSV 60
           MAVARNRVLALAKGGSSRVPLRLQEPHYRCICRRFVSTDPSNSILNPLVLRLIQEPSSSV
Sbjct: 1   MAVARNRVLALAKGGSSRVPLRLQEPHYRCICRRFVSTDPSNSILNPLVLRLIQEPSSSV 60

Query: 61  KSVLDSPENAFLGSSWLSWKALVTSLISSSSPKKAQLALEWRLEKMSKENERDPDFYIDL 120
           KSVLDSPENAFLGSSWLSWKALVTSLISSSSPKKAQLALEWRLEKMSKENERDPDFYIDL
Sbjct: 61  KSVLDSPENAFLGSSWLSWKALVTSLISSSSPKKAQLALEWRLEKMSKENERDPDFYIDL 120

Query: 121 IRLCGELQNVPLAMRVFTAMEFQGVQPTVTAFNSLIEVCISSHNMITAFSMFEIMKNSES 180
           IRLCGELQNVPLAMRVFTAMEFQGVQPTVTAFNSLIEVCISSHNMITAFSMFEIMKNSES
Sbjct: 121 IRLCGELQNVPLAMRVFTAMEFQGVQPTVTAFNSLIEVCISSHNMITAFSMFEIMKNSES 180

Query: 181 SKPNADTFFYFISAFAKRHDVNSMEAWYSANRAFEFSADLRTYEALIHGSVKSKCFDFAV 240
           SKPNADTFFYFISAFAKRHDVNSMEAWYSANRAFEFSADLRTYEALIHGSVKSKCFDFAV
Sbjct: 181 SKPNADTFFYFISAFAKRHDVNSMEAWYSANRAFEFSADLRTYEALIHGSVKSKCFDFAV 240

Query: 241 RCFDEMMLSGIVPNAIILDNMLEGFCKRKDLDELKKFLTVVLDKGWEINWNVVEKFIPIW 300
           RCFDEMMLSGIVPNAIILDNMLEGFCKRKDLDELKKFLTVVLDKGWEINWNVVEKFIPIW
Sbjct: 241 RCFDEMMLSGIVPNAIILDNMLEGFCKRKDLDELKKFLTVVLDKGWEINWNVVEKFIPIW 300

Query: 301 FESGRRKGWRRSLPS 316
           FESGRRKGWRRSLPS
Sbjct: 301 FESGRRKGWRRSLPS 315

[Close]

BLAST of CmoCh09G005400 vs. NCBI nr
Match: KAG7024539.1 (Pentatricopeptide repeat-containing protein, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 601.7 bits (1550), Expect = 3.7e-168
Identity = 303/313 (96.81%), Postives = 305/313 (97.44%), Query Frame = 0


Query: 1   MAVARNRVLALAKGGSSRVPLRLQEPHYRCICRRFVSTDPSNSILNPLVLRLIQEPSSSV 60
           MAVARNRVLALAKGGSSRVPLRLQEPHYRCICRRFVSTDPSNSILNPLVLRLIQEPSSSV
Sbjct: 1   MAVARNRVLALAKGGSSRVPLRLQEPHYRCICRRFVSTDPSNSILNPLVLRLIQEPSSSV 60

Query: 61  KSVLDSPENAFLGSSWLSWKALVTSLISSSSPKKAQLALEWRLEKMSKENERDPDFYIDL 120
           KSVLDSPENAFLGSS LSWKALVTSLISSSSPKKAQLALEWRLEKMSKENERDPDFYIDL
Sbjct: 61  KSVLDSPENAFLGSSRLSWKALVTSLISSSSPKKAQLALEWRLEKMSKENERDPDFYIDL 120

Query: 121 IRLCGELQNVPLAMRVFTAMEFQGVQPTVTAFNSLIEVCISSHNMITAFSMFEIMKNSES 180
           IRLCGELQNVPLAMRVFTAMEFQGV+PTVTAFNSLIEVCISSHNMITAFSMFEIMKNSES
Sbjct: 121 IRLCGELQNVPLAMRVFTAMEFQGVKPTVTAFNSLIEVCISSHNMITAFSMFEIMKNSES 180

Query: 181 SKPNADTFFYFISAFAKRHDVNSMEAWYSANRAFEFSADLRTYEALIHGSVKSKCFDFAV 240
           SKPNADTFFYFISAFAKRHDVNSMEAWYSA RAFEFSADLRTYEALIHGSVKSKCFDFAV
Sbjct: 181 SKPNADTFFYFISAFAKRHDVNSMEAWYSAKRAFEFSADLRTYEALIHGSVKSKCFDFAV 240

Query: 241 RCFDEMMLSGIVPNAIILDNMLEGFCKRKDLDELKKFLTVVLDKGWEINWNVVEKFIPIW 300
           RCFDEMMLSGIVPNAIILDNMLEGFCKRKDLDELKKFLTVVLDKGWEINWNVVEKFIPIW
Sbjct: 241 RCFDEMMLSGIVPNAIILDNMLEGFCKRKDLDELKKFLTVVLDKGWEINWNVVEKFIPIW 300

Query: 301 FESGRRKGWRRSL 314
           FESG  +G    L
Sbjct: 301 FESGEAEGMEEIL 313

[Close]

BLAST of CmoCh09G005400 vs. NCBI nr
Match: XP_023534997.1 (pentatricopeptide repeat-containing protein At1g02060, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 589.0 bits (1517), Expect = 2.5e-164
Identity = 297/313 (94.89%), Postives = 301/313 (96.17%), Query Frame = 0


Query: 1   MAVARNRVLALAKGGSSRVPLRLQEPHYRCICRRFVSTDPSNSILNPLVLRLIQEPSSSV 60
           MAVARNRVLALAKGGSSR+PLR QE HYRCICRRFVSTDPSNSILNP VLRLIQEPSSSV
Sbjct: 1   MAVARNRVLALAKGGSSRIPLRFQEAHYRCICRRFVSTDPSNSILNPQVLRLIQEPSSSV 60

Query: 61  KSVLDSPENAFLGSSWLSWKALVTSLISSSSPKKAQLALEWRLEKMSKENERDPDFYIDL 120
           KSVLDSPENAFLG+S LSWKALVTSLISSSSPKKAQLALEWRLEKMSKENERDPDFYIDL
Sbjct: 61  KSVLDSPENAFLGNSRLSWKALVTSLISSSSPKKAQLALEWRLEKMSKENERDPDFYIDL 120

Query: 121 IRLCGELQNVPLAMRVFTAMEFQGVQPTVTAFNSLIEVCISSHNMITAFSMFEIMKNSES 180
           IRLCGELQNVPLAMRVFTAMEFQGV+PTVTAFNSLIEVCISSHNMITAFSMFEIMKNSES
Sbjct: 121 IRLCGELQNVPLAMRVFTAMEFQGVKPTVTAFNSLIEVCISSHNMITAFSMFEIMKNSES 180

Query: 181 SKPNADTFFYFISAFAKRHDVNSMEAWYSANRAFEFSADLRTYEALIHGSVKSKCFDFAV 240
           SKPNADTFFYFISAFAKR DVNSMEAWYSA RAFEFSADLRTYEALIHGSVKSKCFDFAV
Sbjct: 181 SKPNADTFFYFISAFAKRLDVNSMEAWYSAKRAFEFSADLRTYEALIHGSVKSKCFDFAV 240

Query: 241 RCFDEMMLSGIVPNAIILDNMLEGFCKRKDLDELKKFLTVVLDKGWEINWNVVEKFIPIW 300
           RCFDEMMLSGIVPNAIILDNMLEGFCKRKDLDELKKFLTVVLDKGWEINWNVVEKFIPIW
Sbjct: 241 RCFDEMMLSGIVPNAIILDNMLEGFCKRKDLDELKKFLTVVLDKGWEINWNVVEKFIPIW 300

Query: 301 FESGRRKGWRRSL 314
           FESG  +G    L
Sbjct: 301 FESGEAEGMEEIL 313

[Close]

BLAST of CmoCh09G005400 vs. NCBI nr
Match: XP_022975914.1 (pentatricopeptide repeat-containing protein At2g37230-like isoform X1 [Cucurbita maxima] >XP_022975915.1 pentatricopeptide repeat-containing protein At2g37230-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 582.4 bits (1500), Expect = 2.3e-162
Identity = 294/313 (93.93%), Postives = 298/313 (95.21%), Query Frame = 0


Query: 1   MAVARNRVLALAKGGSSRVPLRLQEPHYRCICRRFVSTDPSNSILNPLVLRLIQEPSSSV 60
           MAVARNRVLALAKGGSSR+PLRLQE HYRCICRRFVSTDPSNSILNPLVLRLIQEPSSSV
Sbjct: 1   MAVARNRVLALAKGGSSRIPLRLQEAHYRCICRRFVSTDPSNSILNPLVLRLIQEPSSSV 60

Query: 61  KSVLDSPENAFLGSSWLSWKALVTSLISSSSPKKAQLALEWRLEKMSKENERDPDFYIDL 120
           KSVLDSPEN FLGSS LSWKALVTSLISSSSPKKAQLALEWRLEKM+KENERDPDFYIDL
Sbjct: 61  KSVLDSPENDFLGSSRLSWKALVTSLISSSSPKKAQLALEWRLEKMNKENERDPDFYIDL 120

Query: 121 IRLCGELQNVPLAMRVFTAMEFQGVQPTVTAFNSLIEVCISSHNMITAFSMFEIMKNSES 180
           IRLCGELQNVPLAMRVFTAMEFQGV+PTVTAFNSLIEVCISSHNMITAFSMFEIMKNSES
Sbjct: 121 IRLCGELQNVPLAMRVFTAMEFQGVKPTVTAFNSLIEVCISSHNMITAFSMFEIMKNSES 180

Query: 181 SKPNADTFFYFISAFAKRHDVNSMEAWYSANRAFEFSADLRTYEALIHGSVKSKCFDFAV 240
            KPNADTFFYFISAFAK  DVNSMEAWYSA RAFEFSADLRTYEALIHGSV SKCFDFAV
Sbjct: 181 FKPNADTFFYFISAFAKLRDVNSMEAWYSAKRAFEFSADLRTYEALIHGSVNSKCFDFAV 240

Query: 241 RCFDEMMLSGIVPNAIILDNMLEGFCKRKDLDELKKFLTVVLDKGWEINWNVVEKFIPIW 300
           RCFDEMMLSGIVPNAIILDNMLEGFCKRKDLDELKKFLTVVLDKGWEI WNVVEKFIPIW
Sbjct: 241 RCFDEMMLSGIVPNAIILDNMLEGFCKRKDLDELKKFLTVVLDKGWEIKWNVVEKFIPIW 300

Query: 301 FESGRRKGWRRSL 314
           FESG  +G    L
Sbjct: 301 FESGEAEGMEEIL 313

[Close]

BLAST of CmoCh09G005400 vs. NCBI nr
Match: KAG6591657.1 (Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 511.5 bits (1316), Expect = 5.1e-141
Identity = 267/313 (85.30%), Postives = 269/313 (85.94%), Query Frame = 0


Query: 1   MAVARNRVLALAKGGSSRVPLRLQEPHYRCICRRFVSTDPSNSILNPLVLRLIQEPSSSV 60
           MAVARNRVLALAKGGSSRVPLRLQEPHYRCICRRFVSTDPSNSILNPLVLRLIQEPSSSV
Sbjct: 1   MAVARNRVLALAKGGSSRVPLRLQEPHYRCICRRFVSTDPSNSILNPLVLRLIQEPSSSV 60

Query: 61  KSVLDSPENAFLGSSWLSWKALVTSLISSSSPKKAQLALEWRLEKMSKENERDPDFYIDL 120
           KSVLDSPENAFLGSS LSWKALVTSLISSSSPKKAQLALEWRLEKMSKENERDPDFYIDL
Sbjct: 61  KSVLDSPENAFLGSSRLSWKALVTSLISSSSPKKAQLALEWRLEKMSKENERDPDFYIDL 120

Query: 121 IRLCGELQNVPLAMRVFTAMEFQGVQPTVTAFNSLIEVCISSHNMITAFSMFEIMKNSES 180
           IRLCGELQNVPLAMRVFTAMEFQGV+PTVTAFNSLIEVCISSHNMITAFSMFEIMKNSES
Sbjct: 121 IRLCGELQNVPLAMRVFTAMEFQGVKPTVTAFNSLIEVCISSHNMITAFSMFEIMKNSES 180

Query: 181 SKPNADTFFYFISAFAKRHDVNSMEAWYSANRAFEFSADLRTYEALIHGSVKSKCFDFAV 240
           SKPNADTFFYFISAFAKRHDVNSMEAWYS  RAFEFSADLRTYEALIH            
Sbjct: 181 SKPNADTFFYFISAFAKRHDVNSMEAWYSTKRAFEFSADLRTYEALIH------------ 240

Query: 241 RCFDEMMLSGIVPNAIILDNMLEGFCKRKDLDELKKFLTVVLDKGWEINWNVVEKFIPIW 300
                                  GFCKRKDLDELKKFLTVVLDKGWEINWNVVEKFIPIW
Sbjct: 241 -----------------------GFCKRKDLDELKKFLTVVLDKGWEINWNVVEKFIPIW 278

Query: 301 FESGRRKGWRRSL 314
           FESG  +G    L
Sbjct: 301 FESGEAEGMEEIL 278

[Close]

BLAST of CmoCh09G005400 vs. TAIR 10
Match: AT3G48810.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 68.2 bits (165), Expect = 1.4e-11
Identity = 51/227 (22.47%), Postives = 91/227 (40.09%), Query Frame = 0


Query: 79  WKALVTSLISSSSPKKAQLALEWRLEKMSKENERDPDFYIDLIRLCGELQNVPLAMRVFT 138
           + AL+  L      K    A E   E + K    +   Y  LI +      + LA    T
Sbjct: 249 YNALINGLCKEHDYKG---AFELMREMVEKGISPNVISYSTLINVLCNSGQIELAFSFLT 308

Query: 139 AMEFQGVQPTVTAFNSLIEVCISSHNMITAFSMFEIMKNSESSKPNADTFFYFISAFAKR 198
            M  +G  P +   +SL++ C        A  ++  M      +PN   +   +  F   
Sbjct: 309 QMLKRGCHPNIYTLSSLVKGCFLRGTTFDALDLWNQMIRGFGLQPNVVAYNTLVQGFCSH 368

Query: 199 HDVNSMEAWYSANRAFEFSADLRTYEALIHGSVKSKCFDFAVRCFDEMMLSGIVPNAIIL 258
            ++    + +S       S ++RTY +LI+G  K    D AV  +++M+ SG  PN ++ 
Sbjct: 369 GNIVKAVSVFSHMEEIGCSPNIRTYGSLINGFAKRGSLDGAVYIWNKMLTSGCCPNVVVY 428

Query: 259 DNMLEGFCKRKDLDELKKFLTVVLDKGWEINWNVVEKFIPIWFESGR 306
            NM+E  C+     E +  + ++  +    +      FI    ++GR
Sbjct: 429 TNMVEALCRHSKFKEAESLIEIMSKENCAPSVPTFNAFIKGLCDAGR 472

[Close]

BLAST of CmoCh09G005400 vs. TAIR 10
Match: AT1G63400.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 67.0 bits (162), Expect = 3.1e-11
Identity = 43/141 (30.50%), Postives = 64/141 (45.39%), Query Frame = 0


Query: 133 AMRVFTAMEFQGVQPTVTAFNSLIEVCISSHNMITAFSMFEIMKNSESSKPNADTFFYFI 192
           A+ +FT ME +GV+P V  ++SLI  C+ ++   +  S            PN  TF   I
Sbjct: 279 ALNLFTEMENKGVRPNVITYSSLIS-CLCNYERWSDASRLLSDMIERKINPNVVTFNALI 338

Query: 193 SAFAKRHDVNSMEAWYSANRAFEFSADLRTYEALIHGSVKSKCFDFAVRCFDEMMLSGIV 252
            AF K   +   E  Y          D+ TY +LI+G       D A   F+ M+     
Sbjct: 339 DAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCF 398

Query: 253 PNAIILDNMLEGFCKRKDLDE 274
           PN +  + ++ GFCK K +DE
Sbjct: 399 PNVVTYNTLINGFCKAKRIDE 418

[Close]

BLAST of CmoCh09G005400 vs. TAIR 10
Match: AT5G41170.1 (Pentatricopeptide repeat (PPR-like) superfamily protein )

HSP 1 Score: 66.6 bits (161), Expect = 4.0e-11
Identity = 45/157 (28.66%), Postives = 70/157 (44.59%), Query Frame = 0


Query: 129 NVPLAMRVFTAMEFQGVQPTVTAFNSLIEVCISSHNMITAFSMFEIMKNSESSKPNADTF 188
           +V  A+ +F  ME  G++P V  + SL+    +S     A S+   M      KP+  TF
Sbjct: 192 HVNYALSLFDQMENYGIRPDVVMYTSLVNGLCNSGRWRDADSLLRGM-TKRKIKPDVITF 251

Query: 189 FYFISAFAKRHDVNSMEAWYSANRAFEFSADLRTYEALIHGSVKSKCFDFAVRCFDEMML 248
              I AF K       E  Y+       + ++ TY +LI+G     C D A + F  M  
Sbjct: 252 NALIDAFVKEGKFLDAEELYNEMIRMSIAPNIFTYTSLINGFCMEGCVDEARQMFYLMET 311

Query: 249 SGIVPNAIILDNMLEGFCKRKDLDELKKFLTVVLDKG 286
            G  P+ +   +++ GFCK K +D+  K    +  KG
Sbjct: 312 KGCFPDVVAYTSLINGFCKCKKVDDAMKIFYEMSQKG 347

[Close]

BLAST of CmoCh09G005400 vs. TAIR 10
Match: AT2G37230.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 62.8 bits (151), Expect = 5.8e-10
Identity = 47/174 (27.01%), Postives = 75/174 (43.10%), Query Frame = 0


Query: 111 ERDPDFYIDLIRLCGELQNVPLAMRVFTAMEFQGVQPTVTAFNSLIEVCISSHNMITAFS 170
           ER    Y  L ++        +A R F  M  +GV+PT   +N ++     S  + TA  
Sbjct: 217 ERTIKSYNSLFKVILRRGRYMMAKRYFNKMVSEGVEPTRHTYNLMLWGFFLSLRLETALR 276

Query: 171 MFEIMKNSESSKPNADTFFYFISAFAKRHDVNSMEAWYSANRAFEFSADLRTYEALIHGS 230
            FE MK +    P+  TF   I+ F +   ++  E  +   +  +    + +Y  +I G 
Sbjct: 277 FFEDMK-TRGISPDDATFNTMINGFCRFKKMDEAEKLFVEMKGNKIGPSVVSYTTMIKGY 336

Query: 231 VKSKCFDFAVRCFDEMMLSGIVPNAIILDNMLEGFCKRKDLDELKKFLTVVLDK 285
           +     D  +R F+EM  SGI PNA     +L G C    + E K  L  ++ K
Sbjct: 337 LAVDRVDDGLRIFEEMRSSGIEPNATTYSTLLPGLCDAGKMVEAKNILKNMMAK 389

[Close]

BLAST of CmoCh09G005400 vs. TAIR 10
Match: AT5G16420.1 (Pentatricopeptide repeat (PPR-like) superfamily protein )

HSP 1 Score: 62.8 bits (151), Expect = 5.8e-10
Identity = 41/153 (26.80%), Postives = 71/153 (46.41%), Query Frame = 0


Query: 115 DFYIDLIRLCGELQNVPLAMRVFTAMEFQGVQPTVTAFNSLIEVCISSHNMITAFSMFEI 174
           + +IDL+R  G       +MR+F  +   GV+ +V + N+L+ V I +       +MF+ 
Sbjct: 121 NLFIDLLRNYGLAGRYESSMRIFLRIPDFGVKRSVRSLNTLLNVLIQNQRFDLVHAMFKN 180

Query: 175 MKNSESSKPNADTFFYFISAFAKRHDVNSMEAWYSANRAFEFSADLRTYEALIHGSVKSK 234
            K S    PN  T    + A  K++D+ S         +     +L TY  ++ G V   
Sbjct: 181 SKESFGITPNIFTCNLLVKALCKKNDIESAYKVLDEIPSMGLVPNLVTYTTILGGYVARG 240

Query: 235 CFDFAVRCFDEMMLSGIVPNAIILDNMLEGFCK 268
             + A R  +EM+  G  P+A     +++G+CK
Sbjct: 241 DMESAKRVLEEMLDRGWYPDATTYTVLMDGYCK 273

The following BLAST results are available for this feature:

BLAST of CmoCh09G005400 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M302	1.9e-10	22.47	Pentatricopeptide repeat-containing protein At3g48810 OS=Arabidopsis thaliana OX...	[more]
Q9SH26	4.3e-10	30.50	Pentatricopeptide repeat-containing protein At1g63400 OS=Arabidopsis thaliana OX...	[more]
Q9FLL3	5.6e-10	28.66	Pentatricopeptide repeat-containing protein At5g41170, mitochondrial OS=Arabidop...	[more]
Q9ZUU3	8.1e-09	27.01	Pentatricopeptide repeat-containing protein At2g37230 OS=Arabidopsis thaliana OX...	[more]
Q9FFE3	8.1e-09	26.80	Pentatricopeptide repeat-containing protein At5g16420, mitochondrial OS=Arabidop...	[more]

BLAST of CmoCh09G005400 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FC94	1.6e-177	100.00	pentatricopeptide repeat-containing protein At1g63080, mitochondrial-like isofor...	[more]
A0A6J1II25	1.1e-162	93.93	pentatricopeptide repeat-containing protein At2g37230-like isoform X1 OS=Cucurbi...	[more]
A0A5D3E5Z9	1.3e-126	74.12	Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A1S3CS56	1.3e-126	74.12	pentatricopeptide repeat-containing protein At3g09060-like OS=Cucumis melo OX=36...	[more]
A0A0A0LJI4	9.3e-125	73.80	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G889090 PE=4 SV=1	[more]

BLAST of CmoCh09G005400 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022936078.1	3.4e-177	100.00	pentatricopeptide repeat-containing protein At1g63080, mitochondrial-like isofor...	[more]
KAG7024539.1	3.7e-168	96.81	Pentatricopeptide repeat-containing protein, chloroplastic, partial [Cucurbita a...	[more]
XP_023534997.1	2.5e-164	94.89	pentatricopeptide repeat-containing protein At1g02060, chloroplastic-like [Cucur...	[more]
XP_022975914.1	2.3e-162	93.93	pentatricopeptide repeat-containing protein At2g37230-like isoform X1 [Cucurbita...	[more]
KAG6591657.1	5.1e-141	85.30	Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita a...	[more]

BLAST of CmoCh09G005400 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G48810.1	1.4e-11	22.47	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT1G63400.1	3.1e-11	30.50	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT5G41170.1	4.0e-11	28.66	Pentatricopeptide repeat (PPR-like) superfamily protein	[more]
AT2G37230.1	5.8e-10	27.01	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT5G16420.1	5.8e-10	26.80	Pentatricopeptide repeat (PPR-like) superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 222..255 e-value: 1.4E-7 score: 29.2
IPR002885	Pentatricopeptide repeat	PFAM	PF13812	PPR_3	coord: 117..159 e-value: 2.7E-7 score: 30.5
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 222..251 e-value: 0.0025 score: 17.9
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 219..253 score: 10.599635
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 49..206 e-value: 1.2E-16 score: 62.5 coord: 207..300 e-value: 2.6E-13 score: 51.7
None	No IPR available	PANTHER	PTHR45613:SF360	PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN	coord: 31..305
None	No IPR available	PANTHER	PTHR45613	PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN	coord: 31..305

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh09G005400.1	CmoCh09G005400.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding