CmoCh09G004600 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh09G004600
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like
Location	Cmo_Chr09: 2060941 .. 2064870 (-)
RNA-Seq Expression	CmoCh09G004600
Synteny	CmoCh09G004600

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCCGACACAAGCTCCGAATGCGACTCTTTCTTCAAAAAAGCCAAACCCTAAAACTCTCCTCCTTCACCTCTCTCCATCATCACTATGCGTGTTCTCCTTACCTTAGCATCTCCCTTTTTCCCTCTGTCTATTAAGCCCCCCATTTCATCCCCTTTCCGATCGTCTCACCTTCCATTTCCATGGCGGTCGACGGATTTGGCAAACTCGACGCTGCCCACTCTCCGCCGCCAATGACGACCGTCGAGAAGAATCGGAGATCGCCCTCGCTGCTTTCGTCTCCTTTGATGATTGTTGGTCTCTCGAAGAAGAACGTTTTGTATCGCCAGCTTCCGCATCAGCCTCTCATGCTCTCCGTCCTTAAATTAGATGGCTCTTGTTTCGGTAATCTCTGTTTCTGTGCTGTGGAATATTTTGTGTGTTGATGCATTTTTTGCTCTGGATTCATCGATTCGTTTGGGGGAAATTGCCGCTTGTGAGTTTGTTTTATGTCTGTTTAAGAGCAGAGGAATCTCTGGTTTTGGTTGTTCTGGTGTTTAGGAGGATTATATAGTTTATTTATACGTTGTGCTTTTCTGATTTTGAGGATTTTGAAGGATTTTATGTTGTTTTTGGTAGTTTAATCTAGATGTTAGAGGATTTTTTTAATGGATTGATGGTTTTGAAGTATTTCATTTTCTTGAAATGTTATCATTTGACCATCAATGTAAAAAGAAAAAGAAGGAAAAAATGATGCCCTAAATTTGAAGAGTCTTCGCTGCACTCTCTTTAAACATAGAAGGACTTCAATGAATTGAGATGTTTGACACAGATATTCAAGTTAAGAGATCAGCCACTGTTGCTGAATTAAAGGGGGCAGTGGAGTCGGTCTTCAGTCACATGCCACAGAATGGACCAGGAAAGATTTCATGGTTGGTTCATTTAACTATTTGACCATTTGATTGTAAGAATGAGATTACCCTTATCTTCGGTCAGATCCTATCATGAAATTCCAGTTCCATGGGTTTCGTTTACATAGCCGGGTCAAAACTAAGGACAATATTTTGATGACATGTAGACGATTTTAAAGTGATGCTTCATAGAACTACTTATCAGCTCTAAATTTTTAACGTAACAAGAAATTTTTAATTGGGATATCTTTTCACTGTGACACAAAAGTTCATAGGAGTGTTCTTCTCAATTTAACCATTTTCTGTTCTTGTTTGATTCGTGGAGGCTCCATGTGTGGTGGTATTTCTGCTTATGCTATGCTGGTCAGAAGTTAGTTGATGATACAGACTACATTGCAAATTTTGGCATCAAGGATGGTGATCAGGTATGTAGTTAGTTTTATAGCTGTAGTTTATGTTGTCTTTTGTGCTCGATGATTTCAATTTCCTTTAATGTCGGATCATTAGTTGTACCAACATGACATAAATCAGAGCGTGTGATTAGTGTTTGTCCTTGAAATTTATATTGCCATATCCTTGCCCTTTCTTCACTAGCTTCACGAATCTTTCTAGCAATAATGTTTTATGGACAGAAGCTGAATATGCTTAACTGTTACCCCCTCAAATTTGATTGAATTGAATTGGTTCAATAAGTTACTTGTCAGGGTCAATAGTGTGCAATGTGGATATCATAGTATTGGTAACATAAAAATCACGTTGGACAGGCTATTTTAGTTCAAAAATTTACGTTCTATTTGAACAACAATATAAATTTCTTTAAACGAGTAACTGATCCCTTTCTTACACTTGATATTGATGCATTACCTGTGAATCTAGTAACTGTCAGGATTGTGCTTCCAGGATGTTAATGAAATATGAAAAGAAAGAGAGTAGAATTACACAGCTTAATGCTTCTGTTCATTGAATTTCCTTGTTTTAACATGTTCAGCTTCAATTTGTCCGGCATGTCACAACTGGCTACAATGTTATGAGAAAGCAATCAAAGAAATGGGTGGTTTCCTCAAAACTGCTCAGTCGGTAAGGCTCTTACCTCCTTATATACACTTTCGTTGAAGGAATGAAATTGTCAGCGTTGCTTATTCTATTCTTGGAGATCTAATTTTGGAATTCAAATACCTAGGATTTAGCTACCTTGCAACAACGTGATATTAGATCATTCTATTTAGCTACCTTGCAACAACATGATATTACATCATTCTATTCTGGGAGGTCTAATTGATCGACTTAGCTTTCATAGCTACCGATCTTCCAGCCACCATAGCTACCCATCTTCCATCCATAATGGATACCAATATTCCAACTTGACCGAAAAGTAACAATATCTGACAAGGGATTTAGTTGATTTATTTTTATGTATTGTTATCGATCTAACATGTGTATTACCATTGTTACCTAATACTTTTGTTACTATTTTATTTTTTTGTTACTAATATCTAGAATTGTTACCTAATATGGAGGACTGTTGGGGGATTTAGTTAGATTTATTTATTTGTTACCTAATATCAACTTTAATACCGGTTTTACAATGGTTACCTAATACGTATATTGTTACCATTTTTATCTAATATCCTAATATCCTAATATCTAGGATTATTACCTAATATGGGAGACTGTTAGGTGATTTAGTTAGATTTATTTTTATGTATTGTTACTTAAATCTGTATTATCATTGTTACGTAATCCGGAATTGTTACCATTTTTACCTAATATCCTAATATCTAGGATTGTTAAGAGATTTAGTTACATTTATTTTTATGTGTTGTTACCTCCTAATATATGTATTGTTAGCTCCTAATATACGCATTTCCTCCTAATACATATATTGTTGCCTCTTAATATTTGTATTGTTACCTAATATGTGTATATTGGCCTCCTAATATCTGTATTGTTATTAGTATTAAGGATTTTAGAGAGATTTAGTTAGATTTATTTGTCTTTTCTATTTTCCTTCTTATCAAAGATTTTAGAAATGTGAGGAAGATAATTTGCATTGACAATGCAGTTGCCAGGTGAGCAAGTTTAGAATATCTTAAATTTCAGTTGTAAGTATTGATCCTTAAAGGGTAAGAACATTACATACGCAAATATAGTCAAGATTTAGGCATTGAAAATGAAAGTGATAGAATATGCTGTTAGAAAATTTGGGTATTTGATTGGACTAAGAAAGCAAAGCATATAAGATATCCTTTCCTTTAATGCTTTATTCATCTAAGTAACGTATTTTTACCATGACTATCTCTCATCCGATCCCCCTGTTTCCAATTGCCATTCTGTTATGCTCACTATAGAGTTCTAAACTCTCAGGATATCATCTCGGTCAAAAAGCTACAAGCAAAATGATAAGGAAGATATGGAAAGATACTACAACGATGCAGAGAGTGGAAGGTTTCAACATCATGGCAACAATGAGCCAAAGGTGGTACTCTTTTTGGGAGGGTGGTTCTCTCACACCAAGCAGGCATCTACAGGAAAGAGGAGCATCAATAGCCTGGCTCGTCCATCAGGTTCTCGCCCTAGCCTGGTGCGTGGTTTTAAGAATTTAATACAATTATGCCGTGAGAAACGACATTATGAGAAAGTGAATAAAAATAAGAGATCCATCAATAGGAGTCTGAGTAGAAGATTAGAAATGACTGATACACACACAAGACAACTAGATTGAGTTAGTCTAAATAAACAACTCTGATGGGTCCTTCGTTCATATCCTTGATAATAAGGTACCATAGGAATACCATACCAGAGTTGATTCATAGTGATGGATACCAAAATTGGTTGGATTATAGCATAATAGGGAGTTGGTGATTATTGTTTTTGTGGTTAATGACAATGGTTAGGCAATAAATAATACGAAGTTATCCATTGATATAGAGAGAAGCATTGTATGAAATACCCTGTGTTTGTTGTACCTATAGAGAAACCCAACTTGTTCCTTACGGACATAACTCTGTAGCTTTGTCTTTCTAGTTGTCAATTTCAGTTCCTC

mRNA sequence

TCCGACACAAGCTCCGAATGCGACTCTTTCTTCAAAAAAGCCAAACCCTAAAACTCTCCTCCTTCACCTCTCTCCATCATCACTATGCGTGTTCTCCTTACCTTAGCATCTCCCTTTTTCCCTCTGTCTATTAAGCCCCCCATTTCATCCCCTTTCCGATCGTCTCACCTTCCATTTCCATGGCGGTCGACGGATTTGGCAAACTCGACGCTGCCCACTCTCCGCCGCCAATGACGACCGTCGAGAAGAATCGGAGATCGCCCTCGCTGCTTTCGTCTCCTTTGATGATTGTTGGTCTCTCGAAGAAGAACGTTTTGTATCGCCAGCTTCCGCATCAGCCTCTCATGCTCTCCGTCCTTAAATTAGATGGCTCTTGTTTCGATATTCAAGTTAAGAGATCAGCCACTGTTGCTGAATTAAAGGGGGCAGTGGAGTCGGTCTTCAGTCACATGCCACAGAATGGACCAGGAAAGATTTCATGGCTCCATGTGTGGTGGTATTTCTGCTTATGCTATGCTGGTCAGAAGTTAGTTGATGATACAGACTACATTGCAAATTTTGGCATCAAGGATGGTGATCAGCTTCAATTTGTCCGGCATGTCACAACTGGCTACAATGTTATGAGAAAGCAATCAAAGAAATGGGTGGTTTCCTCAAAACTGCTCAGTCGGATATCATCTCGGTCAAAAAGCTACAAGCAAAATGATAAGGAAGATATGGAAAGATACTACAACGATGCAGAGAGTGGAAGGTTTCAACATCATGGCAACAATGAGCCAAAGGTGGTACTCTTTTTGGGAGGGTGGTTCTCTCACACCAAGCAGGCATCTACAGGAAAGAGGAGCATCAATAGCCTGGCTCGTCCATCAGGTTCTCGCCCTAGCCTGGTGCGTGGTTTTAAGAATTTAATACAATTATGCCGTGAGAAACGACATTATGAGAAAGTGAATAAAAATAAGAGATCCATCAATAGGAGTCTGAGTAGAAGATTAGAAATGACTGATACACACACAAGACAACTAGATTGAGTTAGTCTAAATAAACAACTCTGATGGGTCCTTCGTTCATATCCTTGATAATAAGGTACCATAGGAATACCATACCAGAGTTGATTCATAGTGATGGATACCAAAATTGGTTGGATTATAGCATAATAGGGAGTTGGTGATTATTGTTTTTGTGGTTAATGACAATGGTTAGGCAATAAATAATACGAAGTTATCCATTGATATAGAGAGAAGCATTGTATGAAATACCCTGTGTTTGTTGTACCTATAGAGAAACCCAACTTGTTCCTTACGGACATAACTCTGTAGCTTTGTCTTTCTAGTTGTCAATTTCAGTTCCTC

Coding sequence (CDS)

ATGGCGGTCGACGGATTTGGCAAACTCGACGCTGCCCACTCTCCGCCGCCAATGACGACCGTCGAGAAGAATCGGAGATCGCCCTCGCTGCTTTCGTCTCCTTTGATGATTGTTGGTCTCTCGAAGAAGAACGTTTTGTATCGCCAGCTTCCGCATCAGCCTCTCATGCTCTCCGTCCTTAAATTAGATGGCTCTTGTTTCGATATTCAAGTTAAGAGATCAGCCACTGTTGCTGAATTAAAGGGGGCAGTGGAGTCGGTCTTCAGTCACATGCCACAGAATGGACCAGGAAAGATTTCATGGCTCCATGTGTGGTGGTATTTCTGCTTATGCTATGCTGGTCAGAAGTTAGTTGATGATACAGACTACATTGCAAATTTTGGCATCAAGGATGGTGATCAGCTTCAATTTGTCCGGCATGTCACAACTGGCTACAATGTTATGAGAAAGCAATCAAAGAAATGGGTGGTTTCCTCAAAACTGCTCAGTCGGATATCATCTCGGTCAAAAAGCTACAAGCAAAATGATAAGGAAGATATGGAAAGATACTACAACGATGCAGAGAGTGGAAGGTTTCAACATCATGGCAACAATGAGCCAAAGGTGGTACTCTTTTTGGGAGGGTGGTTCTCTCACACCAAGCAGGCATCTACAGGAAAGAGGAGCATCAATAGCCTGGCTCGTCCATCAGGTTCTCGCCCTAGCCTGGTGCGTGGTTTTAAGAATTTAATACAATTATGCCGTGAGAAACGACATTATGAGAAAGTGAATAAAAATAAGAGATCCATCAATAGGAGTCTGAGTAGAAGATTAGAAATGACTGATACACACACAAGACAACTAGATTGA

Protein sequence

MAVDGFGKLDAAHSPPPMTTVEKNRRSPSLLSSPLMIVGLSKKNVLYRQLPHQPLMLSVLKLDGSCFDIQVKRSATVAELKGAVESVFSHMPQNGPGKISWLHVWWYFCLCYAGQKLVDDTDYIANFGIKDGDQLQFVRHVTTGYNVMRKQSKKWVVSSKLLSRISSRSKSYKQNDKEDMERYYNDAESGRFQHHGNNEPKVVLFLGGWFSHTKQASTGKRSINSLARPSGSRPSLVRGFKNLIQLCREKRHYEKVNKNKRSINRSLSRRLEMTDTHTRQLD

Homology

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BLAST of CmoCh09G004600 vs. ExPASy Swiss-Prot
Match: Q84WS8 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Arabidopsis thaliana OX=3702 GN=SNRNP25 PE=2 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 3.5e-11
Identity = 43/118 (36.44%), Postives = 65/118 (55.08%), Query Frame = 0


Query: 26  RSPSLLSSPLMIVGLSKKNVLYRQLPHQPLMLSVLKLDGSCFDIQVKRSATVAELKGAVE 85
           R+P+ LS  + +V L K +          + LSV+KLDGS  D+ V  SAT+ +LK  ++
Sbjct: 33  RNPT-LSDVVTLVSLEKGSA---------MRLSVVKLDGSSLDVAVMNSATLKDLKLLIK 92

Query: 86  SVFSHMPQNGPG--KISWLHVWWYFCLCYAGQKLVDDTDYIANFGIKDGDQLQFVRHV 142
              + M Q   G   ISW HVW  FCL    +KL+DD   + + GI++  Q+ F+ +V
Sbjct: 93  KKVNEMEQANMGHRHISWKHVWSNFCLSCNNEKLLDDNAVLQDVGIRNNSQVTFMPYV 140

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BLAST of CmoCh09G004600 vs. ExPASy Swiss-Prot
Match: Q9BV90 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Homo sapiens OX=9606 GN=SNRNP25 PE=1 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 8.1e-08
Identity = 29/89 (32.58%), Postives = 51/89 (57.30%), Query Frame = 0


Query: 53  QPLMLSVLKLDGSCFDIQVKRSATVAELKGAVESV--FSHMPQNGPGKISWLHVWWYFCL 112
           Q + + V K+DG    + V +SATV +LK A++         + G   ISW +VW  + L
Sbjct: 39  QAMTVRVCKMDGEVMPVVVVQSATVLDLKKAIQRYVQLKQEREGGIQHISWSYVWRTYHL 98

Query: 113 CYAGQKLVDDTDYIANFGIKDGDQLQFVR 140
             AG+KL +D   + ++GI++ D++ F++
Sbjct: 99  TSAGEKLTEDRKKLRDYGIRNRDEVSFIK 127

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BLAST of CmoCh09G004600 vs. ExPASy Swiss-Prot
Match: Q8VIK1 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Mus musculus OX=10090 GN=Snrnp25 PE=1 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 1.4e-07
Identity = 28/89 (31.46%), Postives = 51/89 (57.30%), Query Frame = 0


Query: 53  QPLMLSVLKLDGSCFDIQVKRSATVAELKGAVESV--FSHMPQNGPGKISWLHVWWYFCL 112
           Q + + V K+DG    + V ++ATV +LK A++         + G   ISW +VW  + L
Sbjct: 30  QAMTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHL 89

Query: 113 CYAGQKLVDDTDYIANFGIKDGDQLQFVR 140
             AG+KL +D   + ++GI++ D++ F++
Sbjct: 90  TSAGEKLTEDRKKLRDYGIRNRDEVSFIK 118

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BLAST of CmoCh09G004600 vs. ExPASy Swiss-Prot
Match: Q3ZBQ4 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Bos taurus OX=9913 GN=SNRNP25 PE=2 SV=2)

HSP 1 Score: 57.8 bits (138), Expect = 2.3e-07
Identity = 28/89 (31.46%), Postives = 51/89 (57.30%), Query Frame = 0


Query: 53  QPLMLSVLKLDGSCFDIQVKRSATVAELKGAVESV--FSHMPQNGPGKISWLHVWWYFCL 112
           Q + + V K+DG    + V ++ATV +LK A++         + G   ISW +VW  + L
Sbjct: 30  QAMTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLRQEREGGIQHISWSYVWRTYHL 89

Query: 113 CYAGQKLVDDTDYIANFGIKDGDQLQFVR 140
             AG+KL +D   + ++GI++ D++ F++
Sbjct: 90  TSAGEKLTEDRKKLRDYGIRNRDEVSFIK 118

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BLAST of CmoCh09G004600 vs. ExPASy TrEMBL
Match: A0A6J1FBK4 (uncharacterized protein LOC111442589 OS=Cucurbita moschata OX=3662 GN=LOC111442589 PE=4 SV=1)

HSP 1 Score: 567.0 bits (1460), Expect = 4.4e-158
Identity = 282/282 (100.00%), Postives = 282/282 (100.00%), Query Frame = 0


Query: 1   MAVDGFGKLDAAHSPPPMTTVEKNRRSPSLLSSPLMIVGLSKKNVLYRQLPHQPLMLSVL 60
           MAVDGFGKLDAAHSPPPMTTVEKNRRSPSLLSSPLMIVGLSKKNVLYRQLPHQPLMLSVL
Sbjct: 1   MAVDGFGKLDAAHSPPPMTTVEKNRRSPSLLSSPLMIVGLSKKNVLYRQLPHQPLMLSVL 60

Query: 61  KLDGSCFDIQVKRSATVAELKGAVESVFSHMPQNGPGKISWLHVWWYFCLCYAGQKLVDD 120
           KLDGSCFDIQVKRSATVAELKGAVESVFSHMPQNGPGKISWLHVWWYFCLCYAGQKLVDD
Sbjct: 61  KLDGSCFDIQVKRSATVAELKGAVESVFSHMPQNGPGKISWLHVWWYFCLCYAGQKLVDD 120

Query: 121 TDYIANFGIKDGDQLQFVRHVTTGYNVMRKQSKKWVVSSKLLSRISSRSKSYKQNDKEDM 180
           TDYIANFGIKDGDQLQFVRHVTTGYNVMRKQSKKWVVSSKLLSRISSRSKSYKQNDKEDM
Sbjct: 121 TDYIANFGIKDGDQLQFVRHVTTGYNVMRKQSKKWVVSSKLLSRISSRSKSYKQNDKEDM 180

Query: 181 ERYYNDAESGRFQHHGNNEPKVVLFLGGWFSHTKQASTGKRSINSLARPSGSRPSLVRGF 240
           ERYYNDAESGRFQHHGNNEPKVVLFLGGWFSHTKQASTGKRSINSLARPSGSRPSLVRGF
Sbjct: 181 ERYYNDAESGRFQHHGNNEPKVVLFLGGWFSHTKQASTGKRSINSLARPSGSRPSLVRGF 240

Query: 241 KNLIQLCREKRHYEKVNKNKRSINRSLSRRLEMTDTHTRQLD 283
           KNLIQLCREKRHYEKVNKNKRSINRSLSRRLEMTDTHTRQLD
Sbjct: 241 KNLIQLCREKRHYEKVNKNKRSINRSLSRRLEMTDTHTRQLD 282

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BLAST of CmoCh09G004600 vs. ExPASy TrEMBL
Match: A0A6J1IMU4 (uncharacterized protein LOC111476652 OS=Cucurbita maxima OX=3661 GN=LOC111476652 PE=4 SV=1)

HSP 1 Score: 520.0 bits (1338), Expect = 6.2e-144
Identity = 261/266 (98.12%), Postives = 263/266 (98.87%), Query Frame = 0


Query: 18  MTTVEKNRRSPSLLSSPLMIVGLSKKNVLYRQLPHQPLMLSVLKLDGSCFDIQVKRSATV 77
           MTTVEKNRRSPSLLSSPLMIVGLSKKNVLYRQLPHQPLMLSVLKLDGSCFDIQVKRSATV
Sbjct: 1   MTTVEKNRRSPSLLSSPLMIVGLSKKNVLYRQLPHQPLMLSVLKLDGSCFDIQVKRSATV 60

Query: 78  AELKGAVESVFSHMPQNGPGKISWLHVWWYFCLCYAGQKLVDDTDYIANFGIKDGDQLQF 137
           AELKGAVESVFSHMPQNGPGKISWLHVWWYFCLCYAGQKLVDDTDYIANFGIKDGDQLQF
Sbjct: 61  AELKGAVESVFSHMPQNGPGKISWLHVWWYFCLCYAGQKLVDDTDYIANFGIKDGDQLQF 120

Query: 138 VRHVTTGYNVMRKQSKKWVVSSKLLSRISSRSKSYKQNDKEDME-RYYNDAESGRFQHHG 197
           VRHVTTGYNVMRKQSKKWVVSSKLLSRISSRSKSYKQN+KEDME RYYND ESGR QHHG
Sbjct: 121 VRHVTTGYNVMRKQSKKWVVSSKLLSRISSRSKSYKQNNKEDMERRYYNDVESGRIQHHG 180

Query: 198 NNEPKVVLFLGGWFSHTKQASTGKRSINSLARPSGSRPSLVRGFKNLIQLCREKRHYEKV 257
           NNEPKVVLFLGGWFSHTKQASTGKRSINSLARPSGSRPSLVRGFKNLIQLCREKRHYEKV
Sbjct: 181 NNEPKVVLFLGGWFSHTKQASTGKRSINSLARPSGSRPSLVRGFKNLIQLCREKRHYEKV 240

Query: 258 NKNKRSINRSLSRRLEMTDTHTRQLD 283
           NKNKRS+NRSLSRRLEMTDTHTRQLD
Sbjct: 241 NKNKRSMNRSLSRRLEMTDTHTRQLD 266

[Close]

BLAST of CmoCh09G004600 vs. ExPASy TrEMBL
Match: A0A5A7T9I3 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold92G003750 PE=4 SV=1)

HSP 1 Score: 427.2 bits (1097), Expect = 5.4e-116
Identity = 221/273 (80.95%), Postives = 237/273 (86.81%), Query Frame = 0


Query: 1   MAVDGFGKLDAAHSPPP--MTTVEKNRRSPSLLSSPLMIVGLSKKNVLYRQLPHQPLMLS 60
           MAVDG   LD    PPP   TT EK+RRS SLLSSPLMIVGLS+KNVLYRQLPHQPLMLS
Sbjct: 1   MAVDGVCTLDVVDFPPPTSTTTAEKHRRSFSLLSSPLMIVGLSRKNVLYRQLPHQPLMLS 60

Query: 61  VLKLDGSCFDIQVKRSATVAELKGAVESVFSHMPQNGPGKISWLHVWWYFCLCYAGQKLV 120
           VLKLDGSCFDIQV+RSATVAELKGAVE VFSHMPQNGPGKISWLHVWW+FCLCY GQKL+
Sbjct: 61  VLKLDGSCFDIQVRRSATVAELKGAVELVFSHMPQNGPGKISWLHVWWHFCLCYDGQKLI 120

Query: 121 DDTDYIANFGIKDGDQLQFVRHVTTGYNVMRKQSKKWVVSSKLLSRISSRSKSYKQNDKE 180
           DD DYIA+FGIKDGDQLQFVRHVTTGYNV+RKQSKK  VSSKL+SRISSRSKS+KQND++
Sbjct: 121 DDADYIASFGIKDGDQLQFVRHVTTGYNVIRKQSKKREVSSKLISRISSRSKSFKQNDQK 180

Query: 181 DMERY---YNDAESGRFQHHGN-----NEPKVVLFLGGWFSHTKQASTGKRSINSLARPS 240
           DMERY   YND ESGR QH+GN     N+PK+V+FLGGWFSHTK AS GK SI SL RPS
Sbjct: 181 DMERYNYKYNDIESGRCQHNGNNDLFVNQPKMVVFLGGWFSHTKLASAGKMSIKSLVRPS 240

Query: 241 GSRPSLVRGFKNLIQLCREKRHYEKVNKNKRSI 264
            +RPSLV G KNLIQLCREKRHYEKVNK KRSI
Sbjct: 241 VTRPSLVGGLKNLIQLCREKRHYEKVNKKKRSI 273

[Close]

BLAST of CmoCh09G004600 vs. ExPASy TrEMBL
Match: A0A5D3E6G8 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G007520 PE=4 SV=1)

HSP 1 Score: 427.2 bits (1097), Expect = 5.4e-116
Identity = 221/273 (80.95%), Postives = 237/273 (86.81%), Query Frame = 0


Query: 1   MAVDGFGKLDAAHSPPP--MTTVEKNRRSPSLLSSPLMIVGLSKKNVLYRQLPHQPLMLS 60
           MAVDG   LD    PPP   TT EK+RRS SLLSSPLMIVGLS+KNVLYRQLPHQPLMLS
Sbjct: 1   MAVDGVCTLDVVDFPPPTSTTTAEKHRRSFSLLSSPLMIVGLSRKNVLYRQLPHQPLMLS 60

Query: 61  VLKLDGSCFDIQVKRSATVAELKGAVESVFSHMPQNGPGKISWLHVWWYFCLCYAGQKLV 120
           VLKLDGSCFDIQV+RSATVAELKGAVE VFSHMPQNGPGKISWLHVWW+FCLCY GQKL+
Sbjct: 61  VLKLDGSCFDIQVRRSATVAELKGAVELVFSHMPQNGPGKISWLHVWWHFCLCYDGQKLI 120

Query: 121 DDTDYIANFGIKDGDQLQFVRHVTTGYNVMRKQSKKWVVSSKLLSRISSRSKSYKQNDKE 180
           DD DYIA+FGIKDGDQLQFVRHVTTGYNV+RKQSKK  VSSKL+SRISSRSKS+KQND++
Sbjct: 121 DDADYIASFGIKDGDQLQFVRHVTTGYNVIRKQSKKREVSSKLISRISSRSKSFKQNDQK 180

Query: 181 DMERY---YNDAESGRFQHHGN-----NEPKVVLFLGGWFSHTKQASTGKRSINSLARPS 240
           DMERY   YND ESGR QH+GN     N+PK+V+FLGGWFSHTK AS GK SI SL RPS
Sbjct: 181 DMERYNYKYNDIESGRCQHNGNDDLFVNQPKMVVFLGGWFSHTKLASAGKMSIKSLVRPS 240

Query: 241 GSRPSLVRGFKNLIQLCREKRHYEKVNKNKRSI 264
            +RPSLV G KNLIQLCREKRHYEKVNK KRSI
Sbjct: 241 VTRPSLVGGLKNLIQLCREKRHYEKVNKKKRSI 273

[Close]

BLAST of CmoCh09G004600 vs. ExPASy TrEMBL
Match: A0A1S3CR65 (uncharacterized protein LOC103503833 OS=Cucumis melo OX=3656 GN=LOC103503833 PE=4 SV=1)

HSP 1 Score: 427.2 bits (1097), Expect = 5.4e-116
Identity = 221/273 (80.95%), Postives = 237/273 (86.81%), Query Frame = 0


Query: 1   MAVDGFGKLDAAHSPPP--MTTVEKNRRSPSLLSSPLMIVGLSKKNVLYRQLPHQPLMLS 60
           MAVDG   LD    PPP   TT EK+RRS SLLSSPLMIVGLS+KNVLYRQLPHQPLMLS
Sbjct: 1   MAVDGVCTLDVVDFPPPTSTTTAEKHRRSFSLLSSPLMIVGLSRKNVLYRQLPHQPLMLS 60

Query: 61  VLKLDGSCFDIQVKRSATVAELKGAVESVFSHMPQNGPGKISWLHVWWYFCLCYAGQKLV 120
           VLKLDGSCFDIQV+RSATVAELKGAVE VFSHMPQNGPGKISWLHVWW+FCLCY GQKL+
Sbjct: 61  VLKLDGSCFDIQVRRSATVAELKGAVELVFSHMPQNGPGKISWLHVWWHFCLCYDGQKLI 120

Query: 121 DDTDYIANFGIKDGDQLQFVRHVTTGYNVMRKQSKKWVVSSKLLSRISSRSKSYKQNDKE 180
           DD DYIA+FGIKDGDQLQFVRHVTTGYNV+RKQSKK  VSSKL+SRISSRSKS+KQND++
Sbjct: 121 DDADYIASFGIKDGDQLQFVRHVTTGYNVIRKQSKKREVSSKLISRISSRSKSFKQNDQK 180

Query: 181 DMERY---YNDAESGRFQHHGN-----NEPKVVLFLGGWFSHTKQASTGKRSINSLARPS 240
           DMERY   YND ESGR QH+GN     N+PK+V+FLGGWFSHTK AS GK SI SL RPS
Sbjct: 181 DMERYNYKYNDIESGRCQHNGNDDLFVNQPKMVVFLGGWFSHTKLASAGKMSIKSLVRPS 240

Query: 241 GSRPSLVRGFKNLIQLCREKRHYEKVNKNKRSI 264
            +RPSLV G KNLIQLCREKRHYEKVNK KRSI
Sbjct: 241 VTRPSLVGGLKNLIQLCREKRHYEKVNKKKRSI 273

[Close]

BLAST of CmoCh09G004600 vs. NCBI nr
Match: XP_022935765.1 (uncharacterized protein LOC111442589 [Cucurbita moschata])

HSP 1 Score: 567.0 bits (1460), Expect = 9.1e-158
Identity = 282/282 (100.00%), Postives = 282/282 (100.00%), Query Frame = 0


Query: 1   MAVDGFGKLDAAHSPPPMTTVEKNRRSPSLLSSPLMIVGLSKKNVLYRQLPHQPLMLSVL 60
           MAVDGFGKLDAAHSPPPMTTVEKNRRSPSLLSSPLMIVGLSKKNVLYRQLPHQPLMLSVL
Sbjct: 1   MAVDGFGKLDAAHSPPPMTTVEKNRRSPSLLSSPLMIVGLSKKNVLYRQLPHQPLMLSVL 60

Query: 61  KLDGSCFDIQVKRSATVAELKGAVESVFSHMPQNGPGKISWLHVWWYFCLCYAGQKLVDD 120
           KLDGSCFDIQVKRSATVAELKGAVESVFSHMPQNGPGKISWLHVWWYFCLCYAGQKLVDD
Sbjct: 61  KLDGSCFDIQVKRSATVAELKGAVESVFSHMPQNGPGKISWLHVWWYFCLCYAGQKLVDD 120

Query: 121 TDYIANFGIKDGDQLQFVRHVTTGYNVMRKQSKKWVVSSKLLSRISSRSKSYKQNDKEDM 180
           TDYIANFGIKDGDQLQFVRHVTTGYNVMRKQSKKWVVSSKLLSRISSRSKSYKQNDKEDM
Sbjct: 121 TDYIANFGIKDGDQLQFVRHVTTGYNVMRKQSKKWVVSSKLLSRISSRSKSYKQNDKEDM 180

Query: 181 ERYYNDAESGRFQHHGNNEPKVVLFLGGWFSHTKQASTGKRSINSLARPSGSRPSLVRGF 240
           ERYYNDAESGRFQHHGNNEPKVVLFLGGWFSHTKQASTGKRSINSLARPSGSRPSLVRGF
Sbjct: 181 ERYYNDAESGRFQHHGNNEPKVVLFLGGWFSHTKQASTGKRSINSLARPSGSRPSLVRGF 240

Query: 241 KNLIQLCREKRHYEKVNKNKRSINRSLSRRLEMTDTHTRQLD 283
           KNLIQLCREKRHYEKVNKNKRSINRSLSRRLEMTDTHTRQLD
Sbjct: 241 KNLIQLCREKRHYEKVNKNKRSINRSLSRRLEMTDTHTRQLD 282

[Close]

BLAST of CmoCh09G004600 vs. NCBI nr
Match: KAG7024455.1 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 546.2 bits (1406), Expect = 1.7e-151
Identity = 281/316 (88.92%), Postives = 281/316 (88.92%), Query Frame = 0


Query: 1   MAVDGFGKLDAAHSPPPMTTVEKNRRSPSLLSSPLMIVGLSKKNVLYRQLPHQPLMLSVL 60
           MAVDGFGKLDAA SPPPMTTVEKNRRSPSLLSSPLMIVGLSKKNVLYRQLPHQPLMLSVL
Sbjct: 1   MAVDGFGKLDAADSPPPMTTVEKNRRSPSLLSSPLMIVGLSKKNVLYRQLPHQPLMLSVL 60

Query: 61  KLDGSCFDIQVKRSATVAELKGAVESVFSHMPQNGPGKISW------------------- 120
           KLDGSCFDIQVKRSATVAELKGAVESVFSHMPQNGPGKISW                   
Sbjct: 61  KLDGSCFDIQVKRSATVAELKGAVESVFSHMPQNGPGKISWLKFLIGISFHCDTKVHRRV 120

Query: 121 ---------------LHVWWYFCLCYAGQKLVDDTDYIANFGIKDGDQLQFVRHVTTGYN 180
                          LHVWWYFCLCYAGQKLVDDTDYIANFGIKDGDQLQFVRHVTTGYN
Sbjct: 121 LLNLTIFLFLFDSWRLHVWWYFCLCYAGQKLVDDTDYIANFGIKDGDQLQFVRHVTTGYN 180

Query: 181 VMRKQSKKWVVSSKLLSRISSRSKSYKQNDKEDMERYYNDAESGRFQHHGNNEPKVVLFL 240
           VMRKQSKKWVVSSKLLSRISSRSKSYKQNDKEDMERYYNDAESGRFQHHGNNEPKVVLFL
Sbjct: 181 VMRKQSKKWVVSSKLLSRISSRSKSYKQNDKEDMERYYNDAESGRFQHHGNNEPKVVLFL 240

Query: 241 GGWFSHTKQASTGKRSINSLARPSGSRPSLVRGFKNLIQLCREKRHYEKVNKNKRSINRS 283
           GGWFSHTKQASTGKRSINSLARPSGSRPSLVRGFKNLIQLCREKRHYEKVNKNKRSINRS
Sbjct: 241 GGWFSHTKQASTGKRSINSLARPSGSRPSLVRGFKNLIQLCREKRHYEKVNKNKRSINRS 300

[Close]

BLAST of CmoCh09G004600 vs. NCBI nr
Match: XP_023535364.1 (uncharacterized protein LOC111796829 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 543.9 bits (1400), Expect = 8.2e-151
Identity = 272/280 (97.14%), Postives = 276/280 (98.57%), Query Frame = 0


Query: 1   MAVDGFGKLDAAHSPPPMTTVEKNRRSPSLLSSPLMIVGLSKKNVLYRQLPHQPLMLSVL 60
           MAVDGFGKLDA+  PPPMTTVEKNRRSPSLLSSPLMIVGLSKKNVLYRQLPHQPLMLSVL
Sbjct: 1   MAVDGFGKLDASDFPPPMTTVEKNRRSPSLLSSPLMIVGLSKKNVLYRQLPHQPLMLSVL 60

Query: 61  KLDGSCFDIQVKRSATVAELKGAVESVFSHMPQNGPGKISWLHVWWYFCLCYAGQKLVDD 120
           KLDGSCFDIQVKRSATVAELKGAVESVFSHMPQNGPGKISWLHVWWYFCLCYAGQKLVDD
Sbjct: 61  KLDGSCFDIQVKRSATVAELKGAVESVFSHMPQNGPGKISWLHVWWYFCLCYAGQKLVDD 120

Query: 121 TDYIANFGIKDGDQLQFVRHVTTGYNVMRKQSKKWVVSSKLLSRISSRSKSYKQNDKEDM 180
           TDYIANFGIKDGDQLQFVRHVTTGYNVMRKQSKKWVVSSKLLSRISSRSKSYKQN+KEDM
Sbjct: 121 TDYIANFGIKDGDQLQFVRHVTTGYNVMRKQSKKWVVSSKLLSRISSRSKSYKQNEKEDM 180

Query: 181 ERYYNDAESGRFQHHGNNEPKVVLFLGGWFSHTKQASTGKRSINSLARPSGSRPSLVRGF 240
           ERYYNDAESGRFQHHGNNEP+VVLFLGGWFSH KQASTGKRSINSLARPSGSRPSLVRGF
Sbjct: 181 ERYYNDAESGRFQHHGNNEPRVVLFLGGWFSHNKQASTGKRSINSLARPSGSRPSLVRGF 240

Query: 241 KNLIQLCREKRHYEKVNKNKRSINRSLSRRLEMTDT-HTR 280
           KNLIQLCREKRHYEKVNKNKRSINRSLSRRLEMTDT HT+
Sbjct: 241 KNLIQLCREKRHYEKVNKNKRSINRSLSRRLEMTDTQHTQ 280

[Close]

BLAST of CmoCh09G004600 vs. NCBI nr
Match: XP_022976189.1 (uncharacterized protein LOC111476652 [Cucurbita maxima])

HSP 1 Score: 520.0 bits (1338), Expect = 1.3e-143
Identity = 261/266 (98.12%), Postives = 263/266 (98.87%), Query Frame = 0


Query: 18  MTTVEKNRRSPSLLSSPLMIVGLSKKNVLYRQLPHQPLMLSVLKLDGSCFDIQVKRSATV 77
           MTTVEKNRRSPSLLSSPLMIVGLSKKNVLYRQLPHQPLMLSVLKLDGSCFDIQVKRSATV
Sbjct: 1   MTTVEKNRRSPSLLSSPLMIVGLSKKNVLYRQLPHQPLMLSVLKLDGSCFDIQVKRSATV 60

Query: 78  AELKGAVESVFSHMPQNGPGKISWLHVWWYFCLCYAGQKLVDDTDYIANFGIKDGDQLQF 137
           AELKGAVESVFSHMPQNGPGKISWLHVWWYFCLCYAGQKLVDDTDYIANFGIKDGDQLQF
Sbjct: 61  AELKGAVESVFSHMPQNGPGKISWLHVWWYFCLCYAGQKLVDDTDYIANFGIKDGDQLQF 120

Query: 138 VRHVTTGYNVMRKQSKKWVVSSKLLSRISSRSKSYKQNDKEDME-RYYNDAESGRFQHHG 197
           VRHVTTGYNVMRKQSKKWVVSSKLLSRISSRSKSYKQN+KEDME RYYND ESGR QHHG
Sbjct: 121 VRHVTTGYNVMRKQSKKWVVSSKLLSRISSRSKSYKQNNKEDMERRYYNDVESGRIQHHG 180

Query: 198 NNEPKVVLFLGGWFSHTKQASTGKRSINSLARPSGSRPSLVRGFKNLIQLCREKRHYEKV 257
           NNEPKVVLFLGGWFSHTKQASTGKRSINSLARPSGSRPSLVRGFKNLIQLCREKRHYEKV
Sbjct: 181 NNEPKVVLFLGGWFSHTKQASTGKRSINSLARPSGSRPSLVRGFKNLIQLCREKRHYEKV 240

Query: 258 NKNKRSINRSLSRRLEMTDTHTRQLD 283
           NKNKRS+NRSLSRRLEMTDTHTRQLD
Sbjct: 241 NKNKRSMNRSLSRRLEMTDTHTRQLD 266

[Close]

BLAST of CmoCh09G004600 vs. NCBI nr
Match: XP_038899214.1 (uncharacterized protein LOC120086568 [Benincasa hispida])

HSP 1 Score: 452.2 bits (1162), Expect = 3.3e-123
Identity = 232/274 (84.67%), Postives = 243/274 (88.69%), Query Frame = 0


Query: 1   MAVDGFGKLDAAH----SPPPMTTVEKNRRSPSLLSSPLMIVGLSKKNVLYRQLPHQPLM 60
           MA+DG   LD        PPP TTVEK+RRS SLLSSPLMIVGLS+KNVLYRQLPHQPLM
Sbjct: 1   MAIDGVCTLDVVEFPPPPPPPPTTVEKHRRSFSLLSSPLMIVGLSRKNVLYRQLPHQPLM 60

Query: 61  LSVLKLDGSCFDIQVKRSATVAELKGAVESVFSHMPQNGPGKISWLHVWWYFCLCYAGQK 120
           LSVLKLDGSCFDIQVKRSATVAELKGAVESVFSHMPQNGPGKISWLHVWW+FCLCYAGQK
Sbjct: 61  LSVLKLDGSCFDIQVKRSATVAELKGAVESVFSHMPQNGPGKISWLHVWWHFCLCYAGQK 120

Query: 121 LVDDTDYIANFGIKDGDQLQFVRHVTTGYNVMRKQSKKWVVSSKLLSRISSRSKSYKQND 180
           LVDD DYIANFGIKDGDQLQFVRHVTTGYN +RKQSKK VVSSKLLSRIS RSK+Y+QND
Sbjct: 121 LVDDADYIANFGIKDGDQLQFVRHVTTGYNAIRKQSKKCVVSSKLLSRISYRSKNYEQND 180

Query: 181 KEDMERY-YNDAESGRFQHHGNN------EPKVVLFLGGWFSHTKQASTGKRSINSLARP 240
           +EDMERY YND ESGRFQHHGNN      EPK+V+FLGGWFSHTK AS GK  INSL RP
Sbjct: 181 QEDMERYNYNDIESGRFQHHGNNELFMNHEPKMVVFLGGWFSHTKLASAGKTRINSLVRP 240

Query: 241 SGSRPSLVRGFKNLIQLCREKRHYEKVNKNKRSI 264
           SG+RPSLVRGFKNLIQLCREKRHYEKVNK KRSI
Sbjct: 241 SGTRPSLVRGFKNLIQLCREKRHYEKVNKKKRSI 274

[Close]

BLAST of CmoCh09G004600 vs. TAIR 10
Match: AT4G32270.1 (Ubiquitin-like superfamily protein )

HSP 1 Score: 139.4 bits (350), Expect = 4.4e-33
Identity = 95/247 (38.46%), Postives = 139/247 (56.28%), Query Frame = 0


Query: 25  RRSPSLLSSPLMIV-GLSKKNVL-YRQLPHQPLMLSVLKLDGSCFDIQVKRSATVAELKG 84
           RRS +   SPL ++ GL ++    Y Q+P +P+ L+VLKLDGS F IQV ++ATV ELK 
Sbjct: 6   RRSLAASLSPLRLIDGLPRRRSFNYNQMPEEPIKLTVLKLDGSSFGIQVLKTATVGELKM 65

Query: 85  AVESVFSHMPQNGPGKISWLHVWWYFCLCYAGQKLVDDTDYIANFGIKDGDQLQFVRHVT 144
           AVE+ FSH+P +GPGKISW HVW  FCL Y  ++L+++++Y+  FGIKDGDQL+F+RH++
Sbjct: 66  AVEAAFSHLPISGPGKISWPHVWGQFCLSYEDKRLINESEYLTEFGIKDGDQLRFIRHIS 125

Query: 145 TGYNVMRKQSKKW--VVSSKLLSRISSRSKSYKQNDKEDMERYYNDAESGRFQHHGNNEP 204
               +M K   K   V S K L   S+  ++ K+N   ++E      E G       ++P
Sbjct: 126 NYCMLMVKHKSKTPRVSSFKQLKLFSTTPETRKKNVIREVE------EDGVVDSIPRSQP 185

Query: 205 K-VVLFLGGWFSH---TKQASTGKRSINSLARPSGSRPSLVRGFKNLIQLCREKRHYEKV 264
             +   LGG  S+     Q  T  R++ +            R F  LI   R K + EK 
Sbjct: 186 SFLATVLGGLLSYKSTPSQRGTKYRNVTA-----------SRVFNKLIARFRFKCNSEKD 235

[Close]

BLAST of CmoCh09G004600 vs. TAIR 10
Match: AT5G25340.1 (Ubiquitin-like superfamily protein )

HSP 1 Score: 139.0 bits (349), Expect = 5.7e-33
Identity = 68/149 (45.64%), Postives = 99/149 (66.44%), Query Frame = 0


Query: 42  KKNVLYRQLPHQPLMLSVLKLDGSCFDIQVKRSATVAELKGAVESVFSHMPQNGPGKISW 101
           ++   Y +LP++P+ LSVLKLDGS FD+ V  SATV +LK A+E+ FSH+P+ GP KISW
Sbjct: 6   RRTFSYDKLPNEPIRLSVLKLDGSSFDVYVLTSATVGDLKVAIETAFSHVPKKGPSKISW 65

Query: 102 LHVWWYFCLCYAGQKLVDDTDYIANFGIKDGDQLQFVRHVTTGYNVMRKQSKKWVVSSKL 161
            HVW +FCLC+ GQKL+ DTD I N+G+KDGD+++F  HV+    + +  S+K     K 
Sbjct: 66  SHVWGHFCLCFGGQKLITDTDCIGNYGMKDGDEVRFKNHVSGNAVLSKGYSRK--SKQKN 125

Query: 162 LSRISSRSKSYKQNDKEDMERYYNDAESG 191
           L R+  +      N  E+++  ++D E G
Sbjct: 126 LERVLPKDGDEVLNRIEEIDDSWDDLERG 152

[Close]

BLAST of CmoCh09G004600 vs. TAIR 10
Match: AT4G32270.2 (Ubiquitin-like superfamily protein )

HSP 1 Score: 122.5 bits (306), Expect = 5.5e-28
Identity = 83/220 (37.73%), Postives = 122/220 (55.45%), Query Frame = 0


Query: 50  LPHQPLMLSVLKLDGSCFDIQVKRSATVAELKGAVESVFSHMPQNGPGKISWLHVWWYFC 109
           +P +P+ L+VLKLDGS F   V ++ATV ELK AVE+ FSH+P +GPGKISW HVW  FC
Sbjct: 1   MPEEPIKLTVLKLDGSSF---VLKTATVGELKMAVEAAFSHLPISGPGKISWPHVWGQFC 60

Query: 110 LCYAGQKLVDDTDYIANFGIKDGDQLQFVRHVTTGYNVMRKQSKKW--VVSSKLLSRISS 169
           L Y  ++L+++++Y+  FGIKDGDQL+F+RH++    +M K   K   V S K L   S+
Sbjct: 61  LSYEDKRLINESEYLTEFGIKDGDQLRFIRHISNYCMLMVKHKSKTPRVSSFKQLKLFST 120

Query: 170 RSKSYKQNDKEDMERYYNDAESGRFQHHGNNEPK-VVLFLGGWFSH---TKQASTGKRSI 229
             ++ K+N   ++E      E G       ++P  +   LGG  S+     Q  T  R++
Sbjct: 121 TPETRKKNVIREVE------EDGVVDSIPRSQPSFLATVLGGLLSYKSTPSQRGTKYRNV 180

Query: 230 NSLARPSGSRPSLVRGFKNLIQLCREKRHYEKVNKNKRSI 264
            +            R F  LI   R K + EK   N++ +
Sbjct: 181 TA-----------SRVFNKLIARFRFKCNSEKDVWNRKKL 200

[Close]

BLAST of CmoCh09G004600 vs. TAIR 10
Match: AT1G80060.1 (Ubiquitin-like superfamily protein )

HSP 1 Score: 115.9 bits (289), Expect = 5.2e-26
Identity = 88/248 (35.48%), Postives = 126/248 (50.81%), Query Frame = 0


Query: 13  HSPPPMTTVEKNRRS--------PSLLSSPLMIVG--LSKKNVLYRQLPHQ-PLMLSVLK 72
           HSP     V   RRS        P  LSS  +  G  +S +   Y +LP Q  + LSV+K
Sbjct: 5   HSP-----VRDGRRSGGLRSLIDPRFLSSFALNDGGSISGRRSSYLKLPPQGRIKLSVVK 64

Query: 73  LDGSCFDIQVKRSATVAELKGAVESVFSHMPQNGPGKISWLHVWWYFCLCYAGQKLVDDT 132
           L+GS FD++V +  +VAELK AVE VF+  P  G G ISW HVW +FCLCY  Q+LV+D 
Sbjct: 65  LNGSLFDVEVAKDCSVAELKRAVEQVFTISPLEGHGMISWSHVWGHFCLCYRDQRLVNDK 124

Query: 133 DYIANFGIKDGDQLQFVRHVTTGYNVMRKQSKKWVVSSKLLSRISS-----RSKSYKQND 192
             I   G+ DGDQL FVRH++  ++ M K+SK       L   +SS     + ++  QN 
Sbjct: 125 TSIRYLGLNDGDQLHFVRHLSIDHSPMNKRSKSPSCKRYLELDVSSIVNEIQIQNQNQNG 184

Query: 193 KEDM-ERYYNDAESGRFQHHGNNEPKVVLFLGGWFSHTKQASTGKRSINSLARPS----- 237
            +D+ E+ Y  A+          E ++V  + GW  +  +    ++     + PS     
Sbjct: 185 VDDVAEKCYPGAQ----DELPAAESRLVNLIKGWLPYAGRWGVSRKGPECRSGPSRFSLK 243

[Close]

BLAST of CmoCh09G004600 vs. TAIR 10
Match: AT3G07860.1 (Ubiquitin-like superfamily protein )

HSP 1 Score: 70.5 bits (171), Expect = 2.5e-12
Identity = 43/118 (36.44%), Postives = 65/118 (55.08%), Query Frame = 0


Query: 26  RSPSLLSSPLMIVGLSKKNVLYRQLPHQPLMLSVLKLDGSCFDIQVKRSATVAELKGAVE 85
           R+P+ LS  + +V L K +          + LSV+KLDGS  D+ V  SAT+ +LK  ++
Sbjct: 33  RNPT-LSDVVTLVSLEKGSA---------MRLSVVKLDGSSLDVAVMNSATLKDLKLLIK 92

Query: 86  SVFSHMPQNGPG--KISWLHVWWYFCLCYAGQKLVDDTDYIANFGIKDGDQLQFVRHV 142
              + M Q   G   ISW HVW  FCL    +KL+DD   + + GI++  Q+ F+ +V
Sbjct: 93  KKVNEMEQANMGHRHISWKHVWSNFCLSCNNEKLLDDNAVLQDVGIRNNSQVTFMPYV 140

The following BLAST results are available for this feature:

BLAST of CmoCh09G004600 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q84WS8	3.5e-11	36.44	U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Arabidopsis thaliana O...	[more]
Q9BV90	8.1e-08	32.58	U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Homo sapiens OX=9606 G...	[more]
Q8VIK1	1.4e-07	31.46	U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Mus musculus OX=10090 ...	[more]
Q3ZBQ4	2.3e-07	31.46	U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Bos taurus OX=9913 GN=...	[more]

BLAST of CmoCh09G004600 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FBK4	4.4e-158	100.00	uncharacterized protein LOC111442589 OS=Cucurbita moschata OX=3662 GN=LOC1114425...	[more]
A0A6J1IMU4	6.2e-144	98.12	uncharacterized protein LOC111476652 OS=Cucurbita maxima OX=3661 GN=LOC111476652...	[more]
A0A5A7T9I3	5.4e-116	80.95	U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like OS=Cucumis melo var....	[more]
A0A5D3E6G8	5.4e-116	80.95	U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like OS=Cucumis melo var....	[more]
A0A1S3CR65	5.4e-116	80.95	uncharacterized protein LOC103503833 OS=Cucumis melo OX=3656 GN=LOC103503833 PE=...	[more]

BLAST of CmoCh09G004600 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022935765.1	9.1e-158	100.00	uncharacterized protein LOC111442589 [Cucurbita moschata]	[more]
KAG7024455.1	1.7e-151	88.92	U11/U12 small nuclear ribonucleoprotein 25 kDa protein [Cucurbita argyrosperma s...	[more]
XP_023535364.1	8.2e-151	97.14	uncharacterized protein LOC111796829 [Cucurbita pepo subsp. pepo]	[more]
XP_022976189.1	1.3e-143	98.12	uncharacterized protein LOC111476652 [Cucurbita maxima]	[more]
XP_038899214.1	3.3e-123	84.67	uncharacterized protein LOC120086568 [Benincasa hispida]	[more]

BLAST of CmoCh09G004600 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G32270.1	4.4e-33	38.46	Ubiquitin-like superfamily protein	[more]
AT5G25340.1	5.7e-33	45.64	Ubiquitin-like superfamily protein	[more]
AT4G32270.2	5.5e-28	37.73	Ubiquitin-like superfamily protein	[more]
AT1G80060.1	5.2e-26	35.48	Ubiquitin-like superfamily protein	[more]
AT3G07860.1	2.5e-12	36.44	Ubiquitin-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR040610	SNRNP25, ubiquitin-like domain	PFAM	PF18036	Ubiquitin_4	coord: 57..141 e-value: 3.9E-25 score: 87.7
IPR040610	SNRNP25, ubiquitin-like domain	CDD	cd17058	Ubl_SNRNP25	coord: 55..140 e-value: 2.54423E-32 score: 112.612
None	No IPR available	GENE3D	3.10.20.90		coord: 51..147 e-value: 6.1E-34 score: 117.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 259..282
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..27
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 257..282
None	No IPR available	PANTHER	PTHR14942:SF2	UBIQUITIN-LIKE SUPERFAMILY PROTEIN	coord: 17..257
IPR039690	U11/U12 small nuclear ribonucleoprotein 25kDa protein	PANTHER	PTHR14942	U11/U12 SMALL NUCLEAR RIBONUCLEOPROTEIN 25 KDA PROTEIN	coord: 17..257
IPR000626	Ubiquitin-like domain	PROSITE	PS50053	UBIQUITIN_2	coord: 55..144 score: 9.003338
IPR029071	Ubiquitin-like domain superfamily	SUPERFAMILY	54236	Ubiquitin-like	coord: 51..145

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh09G004600.1	CmoCh09G004600.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
cellular_component	GO:0005689	U12-type spliceosomal complex
molecular_function	GO:0005515	protein binding