CmoCh09G004210 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh09G004210
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionUnknown protein
LocationCmo_Chr09: 1857070 .. 1859453 (-)
RNA-Seq ExpressionCmoCh09G004210
SyntenyCmoCh09G004210
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGTTTGTAGAATCGAAGTTGACAGAAGAGAGTGAGCACACAGAGGCTTTTGGTATAACAATATGCCATTGCTCTTGCGTGCTCACTTCTCTGTCTGTCAGCTTCCATCGCCAATTCCTTCTTTTTTCCCCCCTAAATTCTCAATTTTCTTCCTTTTTTCTTGTCTAATTTTTGTTCATTGTTCATATATACTTCAATTATGATGGTTCATGTGAGAATTGAGATGGGTTTTGTGAAGTTGAGATGTAAATCAAATTTTTGGGCTCAATAATTCTCATTCAATTGGTTTTGATCTGAAAGTGGAAACCTAAATCCAGGTCTTGTTGTTCTTGTTCTTGTTCTTCTTTGGTTCTTTTGTTTGAGGTTTAGAACAGAAGCTAATGGGGGAAGATCTACAAAAGAAAAGCACAAGATGATTCATTTATGCAGGTTTTGTCAACAATGAAACTGGTAATTTTAAATGTTCTATGTTTTAAGACAGCCGTACGTCAATTGCAGTGACAAAATAATATAATTAGAGGGATCTTTTTTTTTTTTTTCTTACTTAATTTGGGGAAGTAATTATGACTTCATTGACTGCTTATATGTATCTCTTTTTGTTTTGGTCTTGTTCATCACTTTCATTTTGGTTGGAGGTCGAATCTCAGACACATCGAGCTCGAATAACTATAAGTCAGGTCGTTCAAGAGATTGGCGTTTGTGGTATATATTACTAGTTACAGTCTACAAGCTTTTGCAAGCTCGAGGTATGTGACAAGCCTTTTCTATCAATGAAATATTGAACGATGTTTCTTTTTTTTTTTTTTAGTTCATTAAGTATGAAGCAAGAGATCGAACATTCAACTGTATGGAATGCTTAATCTGCATCTTATTCATGTTGAAGAATGTTCTTTTGAACGTAAGTCGAGTGATTTTTCATTTGAGCTTTAATCCATCGTCTTAAATAATAATCTATGAGTGATAAGTTAAGTATTAGACATTTCTTGAGCTATCGAGGTTTATCATTGCTTATTCAGTCTTTCATCACAAGAAAAATCAAGTACTTGTGTGAAAGTTTGTTCTTCAATGGTGGGTGATTTTATGAATATATTGTTTATGCTGCAGCTATAAGTATGTCTTGCTAAAATATTTTGTTATGAAAAAAGTTCTAATAATTTATTTGGATATAACTCGAAGAGGTCAATTGGTTCAATACTCGCTTCCAGTTTGATCTGGAAGTCAAGCGCACTATCATTGCACCACATATCTCATGATAATGACATTCTCTTGATTCTTATTTATATGGTAGATAAGCAAGGACAATGAAATATCGATCCCTGAATAACGGATGGAGGTCATCTCAAAGCCCCTCGCCCCATCTCAACGAGGATGAAACGGAAGGAGACGGGAATTAGTACATCAAATGGTAGAATCATACGACAAACACATTCTACGGATAAACCTTGAGAAAGGGTTCAATGAACTGATGTCTACTCTTCTAATGCAGGGCATTGAGTTGAGCATACATCTAAAAAGGATTATTGATTTTTGGACTTCCACACTCAAATAAGAGTAGCATTTGATCATAAAATGTAAGCCTACAACTTCCTTTGCCAGTTGCCTGTTGTGGATTCTGTGATGATCATAAAACGAAGTATATTAGCATCCGACTCGGATAATGTCAACGTAATTGTAACACCCCAAGTAGATCAGTTCTCATCTAAAAACAACAATTCCAGTCAACAGTTCTTCATTATAAGAATTCATGTTTGACATACATATATCTTTTGGTTGTATAATGGTGTGCTGCAGCCTGCCAAGGAGGAGCTCAAGAACCGAGAAGACGATGGAAGAACACATAATCTCATCGGTTCGTGCTAACATAATCACAGACATTAGAAGTATGGATGAAATTGCAGTATAAACAACCAATGAGAGTGAAGTTTAAAGCTCCAAACAAGAGAACAAGATGTGTAAACATATGATGTAATGTATGAAAATGGCCTATAAGTAGTAGGGCATCCAAAAGTGCACTGCTTTATTCTTTATACTTACTGAGCTTTAGCAGTAAATGTGCACTGCCATCTCCAACCCTGATAAACAGTTAACATGAGAATCATTTCTTAGCTTGCCTCTACCAAGTCAGAATCTACTGTTCTAGATGGGCTTCCATGAACAGTTCAATTTTTCATGAATGCCAAATGAAGAACAAGACTAAAAGATACAGTACAATTTGAAACTGAAATGGCAGAAGTAGTAAAACAGATGCCATCAATTCAGGTATAATACTGTACTCTACCTTTATCAGCCTGTTCACTACCCTGAGTAACAGTGAAAGCTTGGCACTTTCTTATCTGTACTTGCACTTTCTCGTCGTCTTTATCTATGCACTTGTTTTTCCC

mRNA sequence

ATGGTGTTTGTAGAATCGAAGTTGACAGAAGAGAGTGAGCACACAGAGGCTTTTGGTTTTGTCAACAATGAAACTGGTCGAATCTCAGACACATCGAGCTCGAATAACTATAAGTCAGGTCGTTCAAGAGATTGGCGTTTGTGGTATATATTACTAGTTACAGTCTACAAGCTTTTGCAAGCTCGAGATAAGCAAGGACAATGAAATATCGATCCCTGAATAACGGATGGAGGTCATCTCAAAGCCCCTCGCCCCATCTCAACGAGGATGAAACGGAAGGAGACGGGAATTAGTACATCAAATGGGCATTGAGTTGAGCATACATCTAAAAAGGATTATTGATTTTTGGACTTCCACACTCAAATAAGAGTAGCATTTGATCATAAAATCCTGCCAAGGAGGAGCTCAAGAACCGAGAAGACGATGGAAGAACACATAATCTCATCGGTTCGTGCTAACATAATCACAGACATTAGAAGTATGGATGAAATTGCAGTATAAACAACCAATGAGAGTGAAGTTTAAAGCTCCAAACAAGAGAACAAGATGTGTAAACATATGATGTAATGTATGAAAATGGCCTATAAGTAGTAGGGCATCCAAAAGTGCACTGCTTTATTCTTTATACTTACTGAGCTTTAGCAGTAAATGTGCACTGCCATCTCCAACCCTGATAAACAGTTAACATGAGAATCATTTCTTAGCTTGCCTCTACCAAGTCAGAATCTACTGTTCTAGATGGGCTTCCATGAACAGTTCAATTTTTCATGAATGCCAAATGAAGAACAAGACTAAAAGATACAGTACAATTTGAAACTGAAATGGCAGAAGTAGTAAAACAGATGCCATCAATTCAGGTATAATACTGTACTCTACCTTTATCAGCCTGTTCACTACCCTGAGTAACAGTGAAAGCTTGGCACTTTCTTATCTGTACTTGCACTTTCTCGTCGTCTTTATCTATGCACTTGTTTTTCCC

Coding sequence (CDS)

ATGGTGTTTGTAGAATCGAAGTTGACAGAAGAGAGTGAGCACACAGAGGCTTTTGGTTTTGTCAACAATGAAACTGGTCGAATCTCAGACACATCGAGCTCGAATAACTATAAGTCAGGTCGTTCAAGAGATTGGCGTTTGTGGTATATATTACTAGTTACAGTCTACAAGCTTTTGCAAGCTCGAGATAAGCAAGGACAATGA

Protein sequence

MVFVESKLTEESEHTEAFGFVNNETGRISDTSSSNNYKSGRSRDWRLWYILLVTVYKLLQARDKQGQ
Homology
[Close]
BLAST of CmoCh09G004210 vs. NCBI nr
Match: KAG6591539.1 (hypothetical protein SDJN03_13885, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 79.3 bits (194), Expect = 1.4e-11
Identity = 47/83 (56.63%), Postives = 49/83 (59.04%), Query Frame = 0 

Query: 1  MVFVESKLTEESEHTEAFGFV----------------NNETGRISDTSSSNNYKSGRSRD 60
          MVFVESKLTEESEHTEAFG V                    GR +       +    SRD
Sbjct: 1  MVFVESKLTEESEHTEAFGLVVLVLVLLWFFYLRFRTEANGGRSTKEKHKMIHLCRCSRD 60

Query: 61 WRLWYILLVTVYKLLQARDKQGQ 68
          WRLWYILLV VYKLLQARDKQGQ
Sbjct: 61 WRLWYILLVAVYKLLQARDKQGQ 83

The following BLAST results are available for this feature:
BLAST of CmoCh09G004210 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh09G004210 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh09G004210 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6591539.11.4e-1156.63hypothetical protein SDJN03_13885, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of CmoCh09G004210 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh09G004210.1CmoCh09G004210.1mRNA