CmoCh09G003640 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh09G003640
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Transmembrane protein
Location	Cmo_Chr09: 1584018 .. 1584377 (-)
RNA-Seq Expression	CmoCh09G003640
Synteny	CmoCh09G003640

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGTCGGGATCGGGGCTACGTCGAGGAGGAGCCGGTTTTCTTCGTACGACCGGTGGGTGGCGGTAGGACTTGGGATTCTTGCAGTGGTTTCGCCGCTCTATATCGACCGGAGACCAAGCTTTGATGCGGAGGAGGAGGAGGAATCATCCATGAATCTTGGGTTCTGGTTGCCTGCTCTTCTCATAACCTTGATCTTCATTATTGCTGGAGTGCTTCACTTGGAACAGAGATGCGCCAGATTTGATGCTTATTGGATTCACAGAGTTGGTGGCTCTTCTTGTGGCATATTCATAGTTCTTCTGCTTCTTGCATTTGTTTTGAAGTGTAAAGCTTCTTTGATGTTCTGGGACCCTTGA

mRNA sequence

ATGGAGGTCGGGATCGGGGCTACGTCGAGGAGGAGCCGGTTTTCTTCGTACGACCGGTGGGTGGCGGTAGGACTTGGGATTCTTGCAGTGGTTTCGCCGCTCTATATCGACCGGAGACCAAGCTTTGATGCGGAGGAGGAGGAGGAATCATCCATGAATCTTGGGTTCTGGTTGCCTGCTCTTCTCATAACCTTGATCTTCATTATTGCTGGAGTGCTTCACTTGGAACAGAGATGCGCCAGATTTGATGCTTATTGGATTCACAGAGTTGGTGGCTCTTCTTGTGGCATATTCATAGTTCTTCTGCTTCTTGCATTTGTTTTGAAGTGTAAAGCTTCTTTGATGTTCTGGGACCCTTGA

Coding sequence (CDS)

ATGGAGGTCGGGATCGGGGCTACGTCGAGGAGGAGCCGGTTTTCTTCGTACGACCGGTGGGTGGCGGTAGGACTTGGGATTCTTGCAGTGGTTTCGCCGCTCTATATCGACCGGAGACCAAGCTTTGATGCGGAGGAGGAGGAGGAATCATCCATGAATCTTGGGTTCTGGTTGCCTGCTCTTCTCATAACCTTGATCTTCATTATTGCTGGAGTGCTTCACTTGGAACAGAGATGCGCCAGATTTGATGCTTATTGGATTCACAGAGTTGGTGGCTCTTCTTGTGGCATATTCATAGTTCTTCTGCTTCTTGCATTTGTTTTGAAGTGTAAAGCTTCTTTGATGTTCTGGGACCCTTGA

Protein sequence

MEVGIGATSRRSRFSSYDRWVAVGLGILAVVSPLYIDRRPSFDAEEEEESSMNLGFWLPALLITLIFIIAGVLHLEQRCARFDAYWIHRVGGSSCGIFIVLLLLAFVLKCKASLMFWDP

Homology

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BLAST of CmoCh09G003640 vs. ExPASy TrEMBL
Match: A0A6J1F9J0 (uncharacterized protein LOC111443331 OS=Cucurbita moschata OX=3662 GN=LOC111443331 PE=4 SV=1)

HSP 1 Score: 244.6 bits (623), Expect = 2.1e-61
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 0


Query: 1   MEVGIGATSRRSRFSSYDRWVAVGLGILAVVSPLYIDRRPSFDAEEEEESSMNLGFWLPA 60
           MEVGIGATSRRSRFSSYDRWVAVGLGILAVVSPLYIDRRPSFDAEEEEESSMNLGFWLPA
Sbjct: 1   MEVGIGATSRRSRFSSYDRWVAVGLGILAVVSPLYIDRRPSFDAEEEEESSMNLGFWLPA 60

Query: 61  LLITLIFIIAGVLHLEQRCARFDAYWIHRVGGSSCGIFIVLLLLAFVLKCKASLMFWDP 120
           LLITLIFIIAGVLHLEQRCARFDAYWIHRVGGSSCGIFIVLLLLAFVLKCKASLMFWDP
Sbjct: 61  LLITLIFIIAGVLHLEQRCARFDAYWIHRVGGSSCGIFIVLLLLAFVLKCKASLMFWDP 119

[Close]

BLAST of CmoCh09G003640 vs. ExPASy TrEMBL
Match: A0A6J1ILG7 (uncharacterized protein LOC111477299 OS=Cucurbita maxima OX=3661 GN=LOC111477299 PE=4 SV=1)

HSP 1 Score: 243.4 bits (620), Expect = 4.7e-61
Identity = 118/119 (99.16%), Postives = 119/119 (100.00%), Query Frame = 0


Query: 1   MEVGIGATSRRSRFSSYDRWVAVGLGILAVVSPLYIDRRPSFDAEEEEESSMNLGFWLPA 60
           MEVGIGATSRRSRFSSYDRWVAVGLGILAVVSPLYIDRRPSFDAEEEEESSMNLGFWLPA
Sbjct: 1   MEVGIGATSRRSRFSSYDRWVAVGLGILAVVSPLYIDRRPSFDAEEEEESSMNLGFWLPA 60

Query: 61  LLITLIFIIAGVLHLEQRCARFDAYWIHRVGGSSCGIFIVLLLLAFVLKCKASLMFWDP 120
           LL+TLIFIIAGVLHLEQRCARFDAYWIHRVGGSSCGIFIVLLLLAFVLKCKASLMFWDP
Sbjct: 61  LLMTLIFIIAGVLHLEQRCARFDAYWIHRVGGSSCGIFIVLLLLAFVLKCKASLMFWDP 119

[Close]

BLAST of CmoCh09G003640 vs. ExPASy TrEMBL
Match: A0A5D3D907 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G001720 PE=4 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 1.6e-53
Identity = 104/118 (88.14%), Postives = 112/118 (94.92%), Query Frame = 0


Query: 1   MEVGIGATSRRSRFSSYDRWVAVGLGILAVVSPLYIDRRPSFDAEEEEESSMNLGFWLPA 60
           MEVG+GA SRRSRFSSYDRW+AVGLG+LAVVSPLYIDRRPS +  EEEESS++LGFWLPA
Sbjct: 1   MEVGVGAMSRRSRFSSYDRWLAVGLGLLAVVSPLYIDRRPSIEELEEEESSIHLGFWLPA 60

Query: 61  LLITLIFIIAGVLHLEQRCARFDAYWIHRVGGSSCGIFIVLLLLAFVLKCKASLMFWD 119
           LLI LIFIIAGVLHLEQRCARFD YWIHRVGGSSCGIFI+LLLLAFVLKCKASLMFW+
Sbjct: 61  LLIILIFIIAGVLHLEQRCARFDPYWIHRVGGSSCGIFIILLLLAFVLKCKASLMFWE 118

[Close]

BLAST of CmoCh09G003640 vs. ExPASy TrEMBL
Match: A0A1S3BUL9 (uncharacterized protein LOC103493702 OS=Cucumis melo OX=3656 GN=LOC103493702 PE=4 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 1.6e-53
Identity = 104/118 (88.14%), Postives = 112/118 (94.92%), Query Frame = 0


Query: 1   MEVGIGATSRRSRFSSYDRWVAVGLGILAVVSPLYIDRRPSFDAEEEEESSMNLGFWLPA 60
           MEVG+GA SRRSRFSSYDRW+AVGLG+LAVVSPLYIDRRPS +  EEEESS++LGFWLPA
Sbjct: 1   MEVGVGAMSRRSRFSSYDRWLAVGLGLLAVVSPLYIDRRPSIEELEEEESSIHLGFWLPA 60

Query: 61  LLITLIFIIAGVLHLEQRCARFDAYWIHRVGGSSCGIFIVLLLLAFVLKCKASLMFWD 119
           LLI LIFIIAGVLHLEQRCARFD YWIHRVGGSSCGIFI+LLLLAFVLKCKASLMFW+
Sbjct: 61  LLIILIFIIAGVLHLEQRCARFDPYWIHRVGGSSCGIFIILLLLAFVLKCKASLMFWE 118

[Close]

BLAST of CmoCh09G003640 vs. ExPASy TrEMBL
Match: A0A0A0L2W6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G648010 PE=4 SV=1)

HSP 1 Score: 217.2 bits (552), Expect = 3.6e-53
Identity = 103/118 (87.29%), Postives = 112/118 (94.92%), Query Frame = 0


Query: 1   MEVGIGATSRRSRFSSYDRWVAVGLGILAVVSPLYIDRRPSFDAEEEEESSMNLGFWLPA 60
           MEVG+GA SRRSRFSSYDRW+AVGLG+LAVVSPLYIDRRPS +  EEEESS++LGFWLPA
Sbjct: 1   MEVGVGAMSRRSRFSSYDRWLAVGLGLLAVVSPLYIDRRPSIEELEEEESSIHLGFWLPA 60

Query: 61  LLITLIFIIAGVLHLEQRCARFDAYWIHRVGGSSCGIFIVLLLLAFVLKCKASLMFWD 119
           LL+ LIFIIAGVLHLEQRCARFD YWIHRVGGSSCGIFI+LLLLAFVLKCKASLMFW+
Sbjct: 61  LLMILIFIIAGVLHLEQRCARFDPYWIHRVGGSSCGIFIILLLLAFVLKCKASLMFWE 118

[Close]

BLAST of CmoCh09G003640 vs. NCBI nr
Match: XP_022936874.1 (uncharacterized protein LOC111443331 [Cucurbita moschata] >XP_023534909.1 uncharacterized protein LOC111796500 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 244.6 bits (623), Expect = 4.4e-61
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 0


Query: 1   MEVGIGATSRRSRFSSYDRWVAVGLGILAVVSPLYIDRRPSFDAEEEEESSMNLGFWLPA 60
           MEVGIGATSRRSRFSSYDRWVAVGLGILAVVSPLYIDRRPSFDAEEEEESSMNLGFWLPA
Sbjct: 1   MEVGIGATSRRSRFSSYDRWVAVGLGILAVVSPLYIDRRPSFDAEEEEESSMNLGFWLPA 60

Query: 61  LLITLIFIIAGVLHLEQRCARFDAYWIHRVGGSSCGIFIVLLLLAFVLKCKASLMFWDP 120
           LLITLIFIIAGVLHLEQRCARFDAYWIHRVGGSSCGIFIVLLLLAFVLKCKASLMFWDP
Sbjct: 61  LLITLIFIIAGVLHLEQRCARFDAYWIHRVGGSSCGIFIVLLLLAFVLKCKASLMFWDP 119

[Close]

BLAST of CmoCh09G003640 vs. NCBI nr
Match: XP_022977145.1 (uncharacterized protein LOC111477299 [Cucurbita maxima])

HSP 1 Score: 243.4 bits (620), Expect = 9.7e-61
Identity = 118/119 (99.16%), Postives = 119/119 (100.00%), Query Frame = 0


Query: 1   MEVGIGATSRRSRFSSYDRWVAVGLGILAVVSPLYIDRRPSFDAEEEEESSMNLGFWLPA 60
           MEVGIGATSRRSRFSSYDRWVAVGLGILAVVSPLYIDRRPSFDAEEEEESSMNLGFWLPA
Sbjct: 1   MEVGIGATSRRSRFSSYDRWVAVGLGILAVVSPLYIDRRPSFDAEEEEESSMNLGFWLPA 60

Query: 61  LLITLIFIIAGVLHLEQRCARFDAYWIHRVGGSSCGIFIVLLLLAFVLKCKASLMFWDP 120
           LL+TLIFIIAGVLHLEQRCARFDAYWIHRVGGSSCGIFIVLLLLAFVLKCKASLMFWDP
Sbjct: 61  LLMTLIFIIAGVLHLEQRCARFDAYWIHRVGGSSCGIFIVLLLLAFVLKCKASLMFWDP 119

[Close]

BLAST of CmoCh09G003640 vs. NCBI nr
Match: KAG6591490.1 (hypothetical protein SDJN03_13836, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 242.3 bits (617), Expect = 2.2e-60
Identity = 118/119 (99.16%), Postives = 118/119 (99.16%), Query Frame = 0


Query: 1   MEVGIGATSRRSRFSSYDRWVAVGLGILAVVSPLYIDRRPSFDAEEEEESSMNLGFWLPA 60
           MEVGIGATSRRSRFSSYDRWVAVGLGILAVVSPLYIDRRPSFDAEEEEESSMNLGFWLPA
Sbjct: 1   MEVGIGATSRRSRFSSYDRWVAVGLGILAVVSPLYIDRRPSFDAEEEEESSMNLGFWLPA 60

Query: 61  LLITLIFIIAGVLHLEQRCARFDAYWIHRVGGSSCGIFIVLLLLAFVLKCKASLMFWDP 120
           LLITLIFIIAGVLHLEQRCARFDAYWIHRVGGSSCGIFIVLLLLAFVLKCKASLM WDP
Sbjct: 61  LLITLIFIIAGVLHLEQRCARFDAYWIHRVGGSSCGIFIVLLLLAFVLKCKASLMLWDP 119

[Close]

BLAST of CmoCh09G003640 vs. NCBI nr
Match: XP_038899620.1 (uncharacterized protein LOC120086878 [Benincasa hispida])

HSP 1 Score: 227.3 bits (578), Expect = 7.2e-56
Identity = 109/118 (92.37%), Postives = 115/118 (97.46%), Query Frame = 0


Query: 1   MEVGIGATSRRSRFSSYDRWVAVGLGILAVVSPLYIDRRPSFDAEEEEESSMNLGFWLPA 60
           MEVGIGATSRRSRFSSYDRWVAVGLG+LAVVSPLYIDRRPS +  EEEESS+NLGFWLPA
Sbjct: 1   MEVGIGATSRRSRFSSYDRWVAVGLGLLAVVSPLYIDRRPSIEELEEEESSINLGFWLPA 60

Query: 61  LLITLIFIIAGVLHLEQRCARFDAYWIHRVGGSSCGIFIVLLLLAFVLKCKASLMFWD 119
           LL+TLIFIIAGVLHLEQRCARFDAYWIHRVGGSSCGIFI+LLLLAFVLKCKASLMFW+
Sbjct: 61  LLMTLIFIIAGVLHLEQRCARFDAYWIHRVGGSSCGIFIILLLLAFVLKCKASLMFWE 118

[Close]

BLAST of CmoCh09G003640 vs. NCBI nr
Match: XP_008452787.1 (PREDICTED: uncharacterized protein LOC103493702 [Cucumis melo] >KAA0064538.1 uncharacterized protein E6C27_scaffold255G002580 [Cucumis melo var. makuwa] >TYK20052.1 uncharacterized protein E5676_scaffold134G001720 [Cucumis melo var. makuwa])

HSP 1 Score: 218.4 bits (555), Expect = 3.3e-53
Identity = 104/118 (88.14%), Postives = 112/118 (94.92%), Query Frame = 0


Query: 1   MEVGIGATSRRSRFSSYDRWVAVGLGILAVVSPLYIDRRPSFDAEEEEESSMNLGFWLPA 60
           MEVG+GA SRRSRFSSYDRW+AVGLG+LAVVSPLYIDRRPS +  EEEESS++LGFWLPA
Sbjct: 1   MEVGVGAMSRRSRFSSYDRWLAVGLGLLAVVSPLYIDRRPSIEELEEEESSIHLGFWLPA 60

Query: 61  LLITLIFIIAGVLHLEQRCARFDAYWIHRVGGSSCGIFIVLLLLAFVLKCKASLMFWD 119
           LLI LIFIIAGVLHLEQRCARFD YWIHRVGGSSCGIFI+LLLLAFVLKCKASLMFW+
Sbjct: 61  LLIILIFIIAGVLHLEQRCARFDPYWIHRVGGSSCGIFIILLLLAFVLKCKASLMFWE 118

[Close]

BLAST of CmoCh09G003640 vs. TAIR 10
Match: AT5G21910.1 (unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 92.0 bits (227), Expect = 3.4e-19
Identity = 52/113 (46.02%), Postives = 70/113 (61.95%), Query Frame = 0


Query: 1   MEVGIGATSRRSRFSSYDRWVAVGLGILAVVSPLYIDRRPSFDAEEEEESSMNLGFWLPA 60
           ME G  ++    RF++  + +A+ L +LAV+SPLYIDR    D EEEEE   +  F    
Sbjct: 1   METG-SSSPMMGRFTTSRKLLAISLSVLAVLSPLYIDRLSEEDLEEEEE-LFSFMFSFSL 60

Query: 61  LLITLIFIIAGVLHLEQRCARFDAYWIHRVGGSSCGIFIVLLLLAFVLKCKAS 114
           LL+ LI  IA  L+ +    RFD YWIHR+ GS  G+ ++L+LL FVL CKAS
Sbjct: 61  LLLLLILAIALSLYSDPSLTRFDPYWIHRLCGSFGGLLVILILLVFVLICKAS 111

The following BLAST results are available for this feature:

BLAST of CmoCh09G003640 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh09G003640 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1F9J0	2.1e-61	100.00	uncharacterized protein LOC111443331 OS=Cucurbita moschata OX=3662 GN=LOC1114433...	[more]
A0A6J1ILG7	4.7e-61	99.16	uncharacterized protein LOC111477299 OS=Cucurbita maxima OX=3661 GN=LOC111477299...	[more]
A0A5D3D907	1.6e-53	88.14	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3BUL9	1.6e-53	88.14	uncharacterized protein LOC103493702 OS=Cucumis melo OX=3656 GN=LOC103493702 PE=...	[more]
A0A0A0L2W6	3.6e-53	87.29	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G648010 PE=4 SV=1	[more]

BLAST of CmoCh09G003640 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022936874.1	4.4e-61	100.00	uncharacterized protein LOC111443331 [Cucurbita moschata] >XP_023534909.1 unchar...	[more]
XP_022977145.1	9.7e-61	99.16	uncharacterized protein LOC111477299 [Cucurbita maxima]	[more]
KAG6591490.1	2.2e-60	99.16	hypothetical protein SDJN03_13836, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_038899620.1	7.2e-56	92.37	uncharacterized protein LOC120086878 [Benincasa hispida]	[more]
XP_008452787.1	3.3e-53	88.14	PREDICTED: uncharacterized protein LOC103493702 [Cucumis melo] >KAA0064538.1 unc...	[more]

BLAST of CmoCh09G003640 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G21910.1	3.4e-19	46.02	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae -...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35758	TRANSMEMBRANE PROTEIN	coord: 10..114
None	No IPR available	PANTHER	PTHR35758:SF2	TRANSMEMBRANE PROTEIN	coord: 10..114

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh09G003640.1	CmoCh09G003640.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane