CmoCh09G003500 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh09G003500
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	Cmo_Chr09: 1520278 .. 1524456 (-)
RNA-Seq Expression	CmoCh09G003500
Synteny	CmoCh09G003500

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAGTCAAAGAAGCTGGTAGAAGGACTCACTAACATTGATGATGACATGCCTCCTTATCGTGCTTGTAATCTTGGGAAGCAACATAGGCAACCCTTTCCTAAACAGGCATGGAGAGCCTCGAAAAAACTGCAACTGGTTCATACTGATCTTTGTGGTCCTCAGCGAACACCATCATTAAATGGTAATCTTTATTACATTGCTTTTATTAATGAACTAACAAGAATGTGTTGGATATTCTTGCTGAAGCAAAAGTCAGAAGTTGCGGGTGTATTTTGGAAATTCAAAGCCAAAGTTGAGAATGAAAGTGTATGCTTGATTCAGACTATAAGATCAGATAATAGCAAGGAGTACACTTTAGAAACTTTTAACAGGTTTTGTGAAGAGGCTGGAATTGAACATCAATTGACAGCATCATACACTCCTCAACAGAATGACGTCAGTGAAAGGAGGAATAGATTCATTATGGAGATGACGAGATGCATGCTTCATGAGAAGGATCTTCCAAAACGTTTTTGGGGAAAAGCAGCAAACACTGTTGTGTGCTTGCAAAATCGAATTTCAACAAAAGATGTGAAGGACCTGACACCATTTGAAGTTTGGTATGGTTACAAACCTTTAAAGTTCGTTAGAGTATTTGGGTGTCTTTGCTTCACGTACATTCCACAGGTGAAGCGTGATAAGCTTGACAAATAGTCAGAAGTTGGCATCTTTGTTGAGTATAGCACTATATCCAAAGCTTACAGAGTTTTTCAACCACATACTAGTCGTGTTATTGTGAGCCGAGATGTTTATTTTGCTGAAAATAAACAATGGAATTGGGAAGGACTGACGAAGGTGAATCAGATTTCTAATGCACCAAACAATTTAACCTTTGGTAGCATGTTAGAAGAGTCTGAAGATGAACGACAAAAAGATTCTGAAGATGAACGACACGATGCTTTGGTTGATGATGCACCTGTCAGAGGAGGAGCTTTCGGTGATCGAGAAAAACAAAATCTGGGAGTTGGTTGATTGACCTCTAAACAGAAAGATAATTAGAGCAAGATGGGTGTTCAGAAAAAAGCTTGGAGTTCACAGCATCTAAACAAGGAAGAGTGTTAAAGATCACGTATTTGTTTAGATTCTCTGTTAGGAGTTAGGAGTTAGATTTAGTTTTTGATTTGATTTTGTTTTGATTTGTTTACTGTTACCAGATTTTCTGCCGATTCTTAGATAGAGTTTCTAAATATCTTTTTGTATTCTCGGTATATATATAGAGTATTATTGCTCTTCATAATTCAATCTTCTCATCAATCATTCAATCGATCCCTATTTCACTAACATCACTCTATCTGATCTTACAACAGTTTTCAGTTTTTGATGTGGGTCGGGATGAGCCCAGAGAAGAATCCAATAGCCATTTTCCGAAAATCAAAATCATGTTTGGTATTGTCATTGATCAGTGCGACTTTTTTCGTTTCTGTTTTTGGCTAACAAGCTGTAGTCAGATGACTTCTTAATCTTGTTCTGCCTTGTCAGGTTTCAGACATCTTCTGCTTTGGATTATGAAAATGACACAGGGATAAAGATTCCTGACGAAGGTAATAAACTGTATGTGAATGATGATTATTTTCACATAAATCCAACCCACACCCAAAGTGGGGTATTTCTGAGTTATAAATTTATAACCCATGTGAATATATATAAATCTTTTGTCTCAAGAATAGTTTTACAGAGAGGGGGAGGACAAGGGGTCAAAATTCACATTTTTCAAGCTTGTGGGGTTTGAAAGCTTAGAATTTCCTATCACAAGGGATACAAAGTTAAATTCCATTATCGAGTAATTATAGGTGAAGATCAAACCATCTACATTTAAGATGAAAATTGAAGTTTTATTGACTAAGTTACGTTAGAATTATAGTTGACCTTTAAATATTGATATGGTTACGTGCTCATTTTTAAATTGTTTTATGTTCTTTTTATATTTATTTTTGTGACACTATTTTTATTAATAGTTTATGTATAGATCTAGTTTATATATATAATAATTATGAATGAGCAGTTGATTGAAAATAAAAGGAAGATAATCTTTTTAATTTATCTCTAAGCTAAATGCGCTTAGAAGCTATGTATGGAGCATAATTTAATCTCATAGGTTTAGTCTTACAATCGTGTTCTATTTGATTCCAAGATCATAAATTTATTGGTATCTCAAGTTTGAATTCAATAACTCTCTGACTTTTGATTATTTTTAAATTATGCAAGTTTCAAACAAATGCTTCAAGACCTGCCTTGGGGCCTGGGGATACCAATTAAAGCTGTTCCAACTAAAGCATTGACCGTGATGGAAACCCCAAAAAATGGAGCTGGTGCAGGTACGTACACACCCACATTAAAGGGGTAAAGAATAAGAAGGAAGCTTTTAAAAGAATTGAACATTTCATTTAAATTCCATTCTGTCTGTCATGTCTAGGAATCTAACCTGTATATGGCTCTAAACTACAAATATTTCTTTGTGATTTCAATTTCATAACAAGAACATATGAAAAAATAATTTAGAGAAGGGGAAAAAGAAAAAAAAAAGGAACCCCATTAGTGAAATGGGCAACAGCTTCAGGCTGTGAAACGAACAGATACCCAAAAAGGATTAGATTCTGAGTTCCTTCGCTAAAGAAAAGAAGTCCCTGCAAGGCCATGGTGCAGCAGATTATGAGCAATGGCATCTCTGGCTTTCATGGAGGACACTGACCTCAAAGCAACTTCAGGAGCCATTTCATCATCTTGAAGCTCTGTTGAGAGTTCTCTATCCATTTCTTCATTCCCCAGTTCACAAATATTGTGGAGAACACAGCAAGCTCCGAGCACCACCGGCAAGTCCTGAAGCTTCACCTCCGTCCGCTTCTGCAGGCAGCGCCACCGTCCCTTCAGCCGAGCAAAGGCATCTTTAGCCACCTTCTGAATCTCCCCAATCTTCTCGTTGAAAGCATGTTGAGTCCAGGTTAAATGTTGCTGTGTATAAGGTACCAAAACCCAGTCCAGTAATGGGTAACTGGAGCCCCCAACAATCCAAACCCCCTTTAATAGTCCCCCGTTTGCCCTTTGAAACAGAGCTGATTTCTCTAGAACTTGATCGTCCGGCATTGATCCCGGCCAACCGATGCACACGTCGGTGAACACCCCTCTCGGATCCACAACTCCTTGGACTGTAATTGAATATGATGTTTTTTGATTTCTCTCTGTGTGGCGCTTGTTGAAATAAGCTGCGACGCTGATTTTGGGGGCGATGATCGGAATGTGTGTGGTGTACATTGAACCAACGACGTTAGGGATCCCGGAAATTGATTCGTATTCCTCTTTGATTCTTCTCAGAGTTTCTTCCTCCGGCCATTGCAGGTGCTTCGGCATTAGCACTGTTCTAATGGCGGTGCAGACCTCGAGTATCAGTTTATGGCAGGTGGATATACCTAACCCGAATTTCTTTGATACGACTCGAAGGGGGTCACCGGTGGCTAATCTCCATAGACAAACGGCGACTCTTTGCTGGACGGGAATGGCGGTTCGAAGAGTCGTGTCCTCCTTGGCTATGGCGGAATTAAGCTCTTCACAAATCATATCAAAAGTTGCCCTTCCCATTCGGAATTGCTTCTTGAATTCTTCATCGGGATAATCCGGACTGTTACATTCATCCCACCAGGCTTTTGACCTGTCTTTTACCCATAGTCTCCGGTGATGTCCGCCGCCATCGCCGCCGCCGCGTTTGCTTGATTTGACGATTTCGATCTTCTGTAATCCATCGGAAGCTGCTGCAACCGCGACGGAGTTGGCTGCTAATCGCGATTTCTTTCGCTTCAATCGGTCGGATTCTTCGACTTCAGAGTAATAATCTTGAGCTTCTGAGTAGAAATCATCCATGGCTTTCGTCTTCTTCCTGTGATTAACCTCCATCGAAACCTTCGCCTCCATGGAAGCTCTGTCGTGTTCTTCCTGCTCATACTTCTCCTGTTCATCCAACAGCAACAGAGAAGTAACCAATCCCTTCAACTCCTTTCCTCTGCCATTTTTTCCGATTGAACCATCGTCTTCATCGGCTTCATCCCCTCTGTTCCTCTTCCTCGCACCGCCGTTGGTGGAATCATTCATCGGGGAAGAAGGGTCAAGAAATTTGAAAGAAACGAAATGAATTACGGGTTTGGTGAG

mRNA sequence

ATGCAGTCAAAGAAGCTGGTAGAAGGACTCACTAACATTGATGATGACATGCCTCCTTATCGTGCTTGTAATCTTGGGAAGCAACATAGGCAACCCTTTCCTAAACAGGCATGGAGAGCCTCGAAAAAACTGCAACTGGTTCATACTGATCTTTGTGGTCCTCAGCGAACACCATCATTAAATGGTAATCTTTATTACATTGCTTTTATTAATGAACTAACAAGAATGTGTTGGATATTCTTGCTGAAGCAAAAGTCAGAAGTTGCGGGTGTATTTTGGAAATTCAAAGCCAAAGTTGAGAATGAAAGTGTATGCTTGATTCAGACTATAAGATCAGATAATAGCAAGGAGTACACTTTAGAAACTTTTAACAGGTTTTGTGAAGAGGCTGGAATTGAACATCAATTGACAGCATCATACACTCCTCAACAGAATGACGTCAGTGAAAGGAGGAATAGATTCATTATGGAGATGACGAGATGCATGCTTCATGAGAAGGATCTTCCAAAACGTTTTTGGGGAAAAGCAGCAAACACTGTTGTGTGCTTGCAAAATCGAATTTCAACAAAAGATGTGAAGGACCTGACACCATTTGAAGTTTGGTATGGTTACAAACCTTTAAAGTTCGTTAGAGTATTTGGGTGTCTTTGCTTCACGTACATTCCACAGCCATTTTCCGAAAATCAAAATCATGTTTGGTTTCAGACATCTTCTGCTTTGGATTATGAAAATGACACAGGGATAAAGATTCCTGACGAAGTTTCAAACAAATGCTTCAAGACCTGCCTTGGGGCCTGGGGATACCAATTAAAGCTGTTCCAACTAAAGCATTGACCGTGATGGAAACCCCAAAAAATGGAGCTGGTGCAGGTACGTACACACCCACATTAAAGGGGTAAAGAATAAGAAGGAAGCTTTTAAAAGAATTGAACATTTCATTTAAATTCCATTCTGTCTGTCATGTCTAGGAATCTAACCTGTATATGGCTCTAAACTACAAATATTTCTTTGTGATTTCAATTTCATAACAAGAACATATGAAAAAATAATTTAGAGAAGGGGAAAAAGAAAAAAAAAAGGAACCCCATTAGTGAAATGGGCAACAGCTTCAGGCTGTGAAACGAACAGATACCCAAAAAGGATTAGATTCTGAGTTCCTTCGCTAAAGAAAAGAAGTCCCTGCAAGGCCATGGTGCAGCAGATTATGAGCAATGGCATCTCTGGCTTTCATGGAGGACACTGACCTCAAAGCAACTTCAGGAGCCATTTCATCATCTTGAAGCTCTGTTGAGAGTTCTCTATCCATTTCTTCATTCCCCAGTTCACAAATATTGTGGAGAACACAGCAAGCTCCGAGCACCACCGGCAAGTCCTGAAGCTTCACCTCCGTCCGCTTCTGCAGGCAGCGCCACCGTCCCTTCAGCCGAGCAAAGGCATCTTTAGCCACCTTCTGAATCTCCCCAATCTTCTCGTTGAAAGCATGTTGAGTCCAGGTTAAATGTTGCTGTGTATAAGGTACCAAAACCCAGTCCAGTAATGGGTAACTGGAGCCCCCAACAATCCAAACCCCCTTTAATAGTCCCCCGTTTGCCCTTTGAAACAGAGCTGATTTCTCTAGAACTTGATCGTCCGGCATTGATCCCGGCCAACCGATGCACACGTCGGTGAACACCCCTCTCGGATCCACAACTCCTTGGACTGTAATTGAATATGATGTTTTTTGATTTCTCTCTGTGTGGCGCTTGTTGAAATAAGCTGCGACGCTGATTTTGGGGGCGATGATCGGAATGTGTGTGGTGTACATTGAACCAACGACGTTAGGGATCCCGGAAATTGATTCGTATTCCTCTTTGATTCTTCTCAGAGTTTCTTCCTCCGGCCATTGCAGGTGCTTCGGCATTAGCACTGTTCTAATGGCGGTGCAGACCTCGAGTATCAGTTTATGGCAGGTGGATATACCTAACCCGAATTTCTTTGATACGACTCGAAGGGGGTCACCGGTGGCTAATCTCCATAGACAAACGGCGACTCTTTGCTGGACGGGAATGGCGGTTCGAAGAGTCGTGTCCTCCTTGGCTATGGCGGAATTAAGCTCTTCACAAATCATATCAAAAGTTGCCCTTCCCATTCGGAATTGCTTCTTGAATTCTTCATCGGGATAATCCGGACTGTTACATTCATCCCACCAGGCTTTTGACCTGTCTTTTACCCATAGTCTCCGGTGATGTCCGCCGCCATCGCCGCCGCCGCGTTTGCTTGATTTGACGATTTCGATCTTCTGTAATCCATCGGAAGCTGCTGCAACCGCGACGGAGTTGGCTGCTAATCGCGATTTCTTTCGCTTCAATCGGTCGGATTCTTCGACTTCAGAGTAATAATCTTGAGCTTCTGAGTAGAAATCATCCATGGCTTTCGTCTTCTTCCTGTGATTAACCTCCATCGAAACCTTCGCCTCCATGGAAGCTCTGTCGTGTTCTTCCTGCTCATACTTCTCCTGTTCATCCAACAGCAACAGAGAAGTAACCAATCCCTTCAACTCCTTTCCTCTGCCATTTTTTCCGATTGAACCATCGTCTTCATCGGCTTCATCCCCTCTGTTCCTCTTCCTCGCACCGCCGTTGGTGGAATCATTCATCGGGGAAGAAGGGTCAAGAAATTTGAAAGAAACGAAATGAATTACGGGTTTGGTGAG

Coding sequence (CDS)

ATGCAGTCAAAGAAGCTGGTAGAAGGACTCACTAACATTGATGATGACATGCCTCCTTATCGTGCTTGTAATCTTGGGAAGCAACATAGGCAACCCTTTCCTAAACAGGCATGGAGAGCCTCGAAAAAACTGCAACTGGTTCATACTGATCTTTGTGGTCCTCAGCGAACACCATCATTAAATGGTAATCTTTATTACATTGCTTTTATTAATGAACTAACAAGAATGTGTTGGATATTCTTGCTGAAGCAAAAGTCAGAAGTTGCGGGTGTATTTTGGAAATTCAAAGCCAAAGTTGAGAATGAAAGTGTATGCTTGATTCAGACTATAAGATCAGATAATAGCAAGGAGTACACTTTAGAAACTTTTAACAGGTTTTGTGAAGAGGCTGGAATTGAACATCAATTGACAGCATCATACACTCCTCAACAGAATGACGTCAGTGAAAGGAGGAATAGATTCATTATGGAGATGACGAGATGCATGCTTCATGAGAAGGATCTTCCAAAACGTTTTTGGGGAAAAGCAGCAAACACTGTTGTGTGCTTGCAAAATCGAATTTCAACAAAAGATGTGAAGGACCTGACACCATTTGAAGTTTGGTATGGTTACAAACCTTTAAAGTTCGTTAGAGTATTTGGGTGTCTTTGCTTCACGTACATTCCACAGCCATTTTCCGAAAATCAAAATCATGTTTGGTTTCAGACATCTTCTGCTTTGGATTATGAAAATGACACAGGGATAAAGATTCCTGACGAAGTTTCAAACAAATGCTTCAAGACCTGCCTTGGGGCCTGGGGATACCAATTAAAGCTGTTCCAACTAAAGCATTGA

Protein sequence

MQSKKLVEGLTNIDDDMPPYRACNLGKQHRQPFPKQAWRASKKLQLVHTDLCGPQRTPSLNGNLYYIAFINELTRMCWIFLLKQKSEVAGVFWKFKAKVENESVCLIQTIRSDNSKEYTLETFNRFCEEAGIEHQLTASYTPQQNDVSERRNRFIMEMTRCMLHEKDLPKRFWGKAANTVVCLQNRISTKDVKDLTPFEVWYGYKPLKFVRVFGCLCFTYIPQPFSENQNHVWFQTSSALDYENDTGIKIPDEVSNKCFKTCLGAWGYQLKLFQLKH

Homology

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BLAST of CmoCh09G003500 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 1.3e-39
Identity = 83/206 (40.29%), Postives = 114/206 (55.34%), Query Frame = 0


Query: 19  PYRACNLGKQHRQPFPKQAWRASKKLQLVHTDLCGPQRTPSLNGNLYYIAFINELTRMCW 78
           P   C  GKQHR  F   + R    L LV++D+CGP    S+ GN Y++ FI++ +R  W
Sbjct: 456 PCDYCLFGKQHRVSFQTSSERKLNILDLVYSDVCGPMEIESMGGNKYFVTFIDDASRKLW 515

Query: 79  IFLLKQKSEVAGVFWKFKAKVENESVCLIQTIRSDNSKEYTLETFNRFCEEAGIEHQLTA 138
           +++LK K +V  VF KF A VE E+   ++ +RSDN  EYT   F  +C   GI H+ T 
Sbjct: 516 VYILKTKDQVFQVFQKFHALVERETGRKLKRLRSDNGGEYTSREFEEYCSSHGIRHEKTV 575

Query: 139 SYTPQQNDVSERRNRFIMEMTRCMLHEKDLPKRFWGKAANTVVCLQNRISTKDVKDLTPF 198
             TPQ N V+ER NR I+E  R ML    LPK FWG+A  T   L NR  +  +    P 
Sbjct: 576 PGTPQHNGVAERMNRTIVEKVRSMLRMAKLPKSFWGEAVQTACYLINRSPSVPLAFEIPE 635

Query: 199 EVWYGYK-PLKFVRVFGCLCFTYIPQ 224
            VW   +     ++VFGC  F ++P+
Sbjct: 636 RVWTNKEVSYSHLKVFGCRAFAHVPK 661

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BLAST of CmoCh09G003500 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 142.9 bits (359), Expect = 5.4e-33
Identity = 88/253 (34.78%), Postives = 129/253 (50.99%), Query Frame = 0


Query: 10  LTNIDDDMPPYRACNLGKQHRQPFP--KQAWRASKKLQLVHTDLCGPQRTPSLNGNLYYI 69
           L N++        C  GKQ R PF   K      + L +VH+D+CGP    +L+   Y++
Sbjct: 445 LNNLELSCEICEPCLNGKQARLPFKQLKDKTHIKRPLFVVHSDVCGPITPVTLDDKNYFV 504

Query: 70  AFINELTRMCWIFLLKQKSEVAGVFWKFKAKVENESVCLIQTIRSDNSKEYTLETFNRFC 129
            F+++ T  C  +L+K KS+V  +F  F AK E      +  +  DN +EY      +FC
Sbjct: 505 IFVDQFTHYCVTYLIKYKSDVFSMFQDFVAKSEAHFNLKVVYLYIDNGREYLSNEMRQFC 564

Query: 130 EEAGIEHQLTASYTPQQNDVSERRNRFIMEMTRCMLHEKDLPKRFWGKAANTVVCLQNRI 189
            + GI + LT  +TPQ N VSER  R I E  R M+    L K FWG+A  T   L NRI
Sbjct: 565 VKKGISYHLTVPHTPQLNGVSERMIRTITEKARTMVSGAKLDKSFWGEAVLTATYLINRI 624

Query: 190 STKDVKD--LTPFEVWYGYKP-LKFVRVFGCLCFTYIPQPFSENQNHVWFQTSSALDYEN 249
            ++ + D   TP+E+W+  KP LK +RVFG   + +I     +  +  +   S  + YE 
Sbjct: 625 PSRALVDSSKTPYEMWHNKKPYLKHLRVFGATVYVHIKNKQGKFDDKSF--KSIFVGYE- 684

Query: 250 DTGIKIPDEVSNK 258
             G K+ D V+ K
Sbjct: 685 PNGFKLWDAVNEK 694

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BLAST of CmoCh09G003500 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 3.1e-28
Identity = 67/208 (32.21%), Postives = 117/208 (56.25%), Query Frame = 0


Query: 23  CNLGKQHRQPFPKQAWRASKKLQLVHTDLCGPQRTPSLNGNLYYIAFINELTRMCWIFLL 82
           C + K H+ PF      +SK L+ +++D+       S++   YY+ F++  TR  W++ L
Sbjct: 482 CFINKSHKVPFSNSTITSSKPLEYIYSDVWS-SPILSIDNYRYYVIFVDHFTRYTWLYPL 541

Query: 83  KQKSEVAGVFWKFKAKVENESVCLIQTIRSDNSKEYTLETFNRFCEEAGIEHQLTASYTP 142
           KQKS+V   F  FK+ VEN     I T+ SDN  E+ +     +  + GI H  +  +TP
Sbjct: 542 KQKSQVKDTFIIFKSLVENRFQTRIGTLYSDNGGEFVV--LRDYLSQHGISHFTSPPHTP 601

Query: 143 QQNDVSERRNRFIMEMTRCMLHEKDLPKRFWGKAANTVVCLQNRISTKDVKDLTPFEVWY 202
           + N +SER++R I+EM   +L    +PK +W  A +  V L NR+ T  ++  +PF+  +
Sbjct: 602 EHNGLSERKHRHIVEMGLTLLSHASVPKTYWPYAFSVAVYLINRLPTPLLQLQSPFQKLF 661

Query: 203 GYKP-LKFVRVFGCLCFTYIPQPFSENQ 230
           G  P  + ++VFGC C+ ++ +P++ ++
Sbjct: 662 GQPPNYEKLKVFGCACYPWL-RPYNRHK 685

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BLAST of CmoCh09G003500 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 1.6e-24
Identity = 64/210 (30.48%), Postives = 115/210 (54.76%), Query Frame = 0


Query: 23  CNLGKQHRQPFPKQAWRASKKLQLVHTDLCGPQRTPSLNGN--LYYIAFINELTRMCWIF 82
           C + K ++ PF +    +++ L+ +++D+     +P L+ +   YY+ F++  TR  W++
Sbjct: 503 CLINKSNKVPFSQSTINSTRPLEYIYSDVWS---SPILSHDNYRYYVIFVDHFTRYTWLY 562

Query: 83  LLKQKSEVAGVFWKFKAKVENESVCLIQTIRSDNSKEYTLETFNRFCEEAGIEHQLTASY 142
            LKQKS+V   F  FK  +EN     I T  SDN  E+       +  + GI H  +  +
Sbjct: 563 PLKQKSQVKETFITFKNLLENRFQTRIGTFYSDNGGEFV--ALWEYFSQHGISHLTSPPH 622

Query: 143 TPQQNDVSERRNRFIMEMTRCMLHEKDLPKRFWGKAANTVVCLQNRISTKDVKDLTPFEV 202
           TP+ N +SER++R I+E    +L    +PK +W  A    V L NR+ T  ++  +PF+ 
Sbjct: 623 TPEHNGLSERKHRHIVETGLTLLSHASIPKTYWPYAFAVAVYLINRLPTPLLQLESPFQK 682

Query: 203 WYGYKP-LKFVRVFGCLCFTYIPQPFSENQ 230
            +G  P    +RVFGC C+ ++ +P+++++
Sbjct: 683 LFGTSPNYDKLRVFGCACYPWL-RPYNQHK 706

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BLAST of CmoCh09G003500 vs. ExPASy Swiss-Prot
Match: O13527 (Truncated transposon Ty1-A Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY1B-A PE=3 SV=3)

HSP 1 Score: 77.4 bits (189), Expect = 2.8e-13
Identity = 42/151 (27.81%), Postives = 74/151 (49.01%), Query Frame = 0


Query: 45  QLVHTDLCGPQRTPSLNGNLYYIAFINELTRMCWIFLLKQKSE--VAGVFWKFKAKVENE 104
           Q +HTD+ GP      +   Y+I+F +E T++ W++ L  + E  +  VF    A ++N+
Sbjct: 107 QYLHTDIFGPVHNLPKSAPSYFISFTDETTKLRWVYPLHDRREDSILDVFTTILAFIKNQ 166

Query: 105 SVCLIQTIRSDNSKEYTLETFNRFCEEAGIEHQLTASYTPQQNDVSERRNRFIMEMTRCM 164
               +  I+ D   EYT  T ++F E+ GI    T +   + + V+ER NR +++  R  
Sbjct: 167 FQASVLVIQMDRGSEYTNRTLHKFLEKNGITPCYTTTADSRAHGVAERLNRTLLDDCRTQ 226

Query: 165 LHEKDLPKRFWGKAANTVVCLQNRISTKDVK 194
           L    LP   W  A      ++N +++   K
Sbjct: 227 LQCSGLPNHLWFSAIEFSTIVRNSLASPKSK 257

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BLAST of CmoCh09G003500 vs. ExPASy TrEMBL
Match: A0A6J1H529 (uncharacterized protein LOC111460124 OS=Cucurbita moschata OX=3662 GN=LOC111460124 PE=4 SV=1)

HSP 1 Score: 456.8 bits (1174), Expect = 6.3e-125
Identity = 218/224 (97.32%), Postives = 220/224 (98.21%), Query Frame = 0


Query: 1   MQSKKLVEGLTNIDDDMPPYRACNLGKQHRQPFPKQAWRASKKLQLVHTDLCGPQRTPSL 60
           MQSKKLV+G  NIDDDMPPY ACNLGKQHRQPFPKQAWRASKKLQLVHTDLCGPQRTPSL
Sbjct: 402 MQSKKLVKG--NIDDDMPPYHACNLGKQHRQPFPKQAWRASKKLQLVHTDLCGPQRTPSL 461

Query: 61  NGNLYYIAFINELTRMCWIFLLKQKSEVAGVFWKFKAKVENESVCLIQTIRSDNSKEYTL 120
           NGNLYYIAFINELTRMCWIFLLKQKSEVAGVFWKFKAKVEN+SVCLIQTIRSDNSKEYTL
Sbjct: 462 NGNLYYIAFINELTRMCWIFLLKQKSEVAGVFWKFKAKVENDSVCLIQTIRSDNSKEYTL 521

Query: 121 ETFNRFCEEAGIEHQLTASYTPQQNDVSERRNRFIMEMTRCMLHEKDLPKRFWGKAANTV 180
           ETFNRFCEEAGIEHQLTASYTPQQNDVSERRNRFIMEMTRCMLHEKDLPKRFWGKAANTV
Sbjct: 522 ETFNRFCEEAGIEHQLTASYTPQQNDVSERRNRFIMEMTRCMLHEKDLPKRFWGKAANTV 581

Query: 181 VCLQNRISTKDVKDLTPFEVWYGYKP-LKFVRVFGCLCFTYIPQ 224
           VCLQNRISTKDVKDLTPFEVWYGYKP LKFVRVFGCLCFTYIPQ
Sbjct: 582 VCLQNRISTKDVKDLTPFEVWYGYKPSLKFVRVFGCLCFTYIPQ 623

[Close]

BLAST of CmoCh09G003500 vs. ExPASy TrEMBL
Match: A0A6J1EMZ3 (uncharacterized protein LOC111434054 OS=Cucurbita moschata OX=3662 GN=LOC111434054 PE=4 SV=1)

HSP 1 Score: 429.1 bits (1102), Expect = 1.4e-116
Identity = 203/224 (90.62%), Postives = 207/224 (92.41%), Query Frame = 0


Query: 1   MQSKKLVEGLTNIDDDMPPYRACNLGKQHRQPFPKQAWRASKKLQLVHTDLCGPQRTPSL 60
           +QSKKLVE LT+IDDDM PYRACN GKQHRQP PKQAWR SKKLQLVH DLCGPQRTPSL
Sbjct: 285 IQSKKLVEELTDIDDDMSPYRACNFGKQHRQPLPKQAWRGSKKLQLVHADLCGPQRTPSL 344

Query: 61  NGNLYYIAFINELTRMCWIFLLKQKSEVAGVFWKFKAKVENESVCLIQTIRSDNSKEYTL 120
           N NLYYIAFINELTR CWIFLLKQKSEVAGVFWKFKAKVE ES CLIQTIRSDNSKEYTL
Sbjct: 345 NDNLYYIAFINELTRKCWIFLLKQKSEVAGVFWKFKAKVEKESACLIQTIRSDNSKEYTL 404

Query: 121 ETFNRFCEEAGIEHQLTASYTPQQNDVSERRNRFIMEMTRCMLHEKDLPKRFWGKAANTV 180
           ETFNRFCEE GIEHQLTASYTPQQNDVSERRNRFIMEMTRCMLHEKDLPKRFWGKA NT+
Sbjct: 405 ETFNRFCEETGIEHQLTASYTPQQNDVSERRNRFIMEMTRCMLHEKDLPKRFWGKATNTI 464

Query: 181 VCLQNRISTKDVKDLTPFEVWYGYKP-LKFVRVFGCLCFTYIPQ 224
           +CLQNRISTK VKD TPFEVWYGYKP  KFVRVFGCLCF YIPQ
Sbjct: 465 MCLQNRISTKVVKDPTPFEVWYGYKPSSKFVRVFGCLCFIYIPQ 508

[Close]

BLAST of CmoCh09G003500 vs. ExPASy TrEMBL
Match: A0A1U8N6D0 (uncharacterized protein LOC107907847 OS=Gossypium hirsutum OX=3635 GN=LOC107944102 PE=4 SV=1)

HSP 1 Score: 394.4 bits (1012), Expect = 3.8e-106
Identity = 187/224 (83.48%), Postives = 199/224 (88.84%), Query Frame = 0


Query: 1   MQSKKLVEGLTNIDDDMPPYRACNLGKQHRQPFPKQAWRASKKLQLVHTDLCGPQRTPSL 60
           MQ K LVEGLT+IDDD+P  RAC  G+QHRQPFPKQAWRASKKLQLV TDLCGPQRTPSL
Sbjct: 246 MQMKNLVEGLTDIDDDLPHCRACKFGEQHRQPFPKQAWRASKKLQLVFTDLCGPQRTPSL 305

Query: 61  NGNLYYIAFINELTRMCWIFLLKQKSEVAGVFWKFKAKVENESVCLIQTIRSDNSKEYTL 120
           NGNLYYIAFI++LTRMCWIFLLK+K EVAGVFWKFKA+VEN S C+IQ +RSDN KEYT 
Sbjct: 306 NGNLYYIAFIDDLTRMCWIFLLKKKLEVAGVFWKFKARVENGSGCMIQILRSDNGKEYTS 365

Query: 121 ETFNRFCEEAGIEHQLTASYTPQQNDVSERRNRFIMEMTRCMLHEKDLPKRFWGKAANTV 180
           ETFNRFCEEAGIEHQLTA YTPQQN VSERRNR IMEMTRCMLHEK+LPK FWG+ ANT 
Sbjct: 366 ETFNRFCEEAGIEHQLTAPYTPQQNGVSERRNRLIMEMTRCMLHEKNLPKGFWGEVANTA 425

Query: 181 VCLQNRISTKDVKDLTPFEVWYGYKP-LKFVRVFGCLCFTYIPQ 224
           V LQNRISTK VKD TPFE WYGYKP LKF+RVFGCLCFT IPQ
Sbjct: 426 VFLQNRISTKAVKDQTPFEAWYGYKPSLKFLRVFGCLCFTCIPQ 469

[Close]

BLAST of CmoCh09G003500 vs. ExPASy TrEMBL
Match: A0A6J1EP08 (uncharacterized protein LOC111436393 OS=Cucurbita moschata OX=3662 GN=LOC111436393 PE=4 SV=1)

HSP 1 Score: 354.4 bits (908), Expect = 4.4e-94
Identity = 174/224 (77.68%), Postives = 179/224 (79.91%), Query Frame = 0


Query: 1   MQSKKLVEGLTNIDDDMPPYRACNLGKQHRQPFPKQAWRASKKLQLVHTDLCGPQRTPSL 60
           MQSKKLVE LT ID+DM P R CN GKQHRQPFPKQAWRASKKLQLVHTDLCGPQRTPSL
Sbjct: 284 MQSKKLVEELTIIDEDMSPCRTCNFGKQHRQPFPKQAWRASKKLQLVHTDLCGPQRTPSL 343

Query: 61  NGNLYYIAFINELTRMCWIFLLKQKSEVAGVFWKFKAKVENESVCLIQTIRSDNSKEYTL 120
                                     +VAGVFWKFKAKVENE  CLIQT+RSDN KEYT 
Sbjct: 344 --------------------------DVAGVFWKFKAKVENEGACLIQTVRSDNGKEYTS 403

Query: 121 ETFNRFCEEAGIEHQLTASYTPQQNDVSERRNRFIMEMTRCMLHEKDLPKRFWGKAANTV 180
           ETFNRFCEEAGIEH LT  YTPQQN VS RRNRFIMEMTRCMLHEKDLPKRFWGKAANT+
Sbjct: 404 ETFNRFCEEAGIEHNLTTPYTPQQNGVSVRRNRFIMEMTRCMLHEKDLPKRFWGKAANTI 463

Query: 181 VCLQNRISTKDVKDLTPFEVWYGYKP-LKFVRVFGCLCFTYIPQ 224
           +CLQNRISTK VKD TPFEVWYGYKP LKFVRVFGCLCF YIPQ
Sbjct: 464 MCLQNRISTKVVKDPTPFEVWYGYKPSLKFVRVFGCLCFIYIPQ 481

[Close]

BLAST of CmoCh09G003500 vs. ExPASy TrEMBL
Match: A0A5A7TSS3 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold30G001770 PE=4 SV=1)

HSP 1 Score: 331.6 bits (849), Expect = 3.1e-87
Identity = 149/224 (66.52%), Postives = 185/224 (82.59%), Query Frame = 0


Query: 1   MQSKKLVEGLTNIDDDMPPYRACNLGKQHRQPFPKQAWRASKKLQLVHTDLCGPQRTPSL 60
           +Q  +L      + +++   +AC+ GK++R+ FPK +WRA++KLQL+HTD+ GPQRTPSL
Sbjct: 362 LQLTELALDFPKLSEEISSCKACHFGKKNRKSFPKSSWRATQKLQLIHTDVAGPQRTPSL 421

Query: 61  NGNLYYIAFINELTRMCWIFLLKQKSEVAGVFWKFKAKVENESVCLIQTIRSDNSKEYTL 120
            G+LYYIAFI++ TRMCWIF LK KSEVA VFWKFKA+VENES C IQ +RSDN KEY L
Sbjct: 422 KGSLYYIAFIDDFTRMCWIFFLKFKSEVAHVFWKFKARVENESGCKIQMVRSDNGKEYVL 481

Query: 121 ETFNRFCEEAGIEHQLTASYTPQQNDVSERRNRFIMEMTRCMLHEKDLPKRFWGKAANTV 180
             F++FCE++GI+HQLTA YTPQQN VSERRNR+IMEMTRCMLHEK LPK+FW +AANT 
Sbjct: 482 AEFDKFCEDSGIKHQLTAPYTPQQNGVSERRNRYIMEMTRCMLHEKSLPKKFWAEAANTA 541

Query: 181 VCLQNRISTKDVKDLTPFEVWYGYKP-LKFVRVFGCLCFTYIPQ 224
           V LQNR+ TK +K+ TPFE WYGYKP LKF++VFGCLCFT++PQ
Sbjct: 542 VFLQNRLPTKALKEKTPFEAWYGYKPSLKFLKVFGCLCFTHVPQ 585

[Close]

BLAST of CmoCh09G003500 vs. NCBI nr
Match: XP_022959005.1 (uncharacterized protein LOC111460124 [Cucurbita moschata])

HSP 1 Score: 456.8 bits (1174), Expect = 1.3e-124
Identity = 218/224 (97.32%), Postives = 220/224 (98.21%), Query Frame = 0


Query: 1   MQSKKLVEGLTNIDDDMPPYRACNLGKQHRQPFPKQAWRASKKLQLVHTDLCGPQRTPSL 60
           MQSKKLV+G  NIDDDMPPY ACNLGKQHRQPFPKQAWRASKKLQLVHTDLCGPQRTPSL
Sbjct: 402 MQSKKLVKG--NIDDDMPPYHACNLGKQHRQPFPKQAWRASKKLQLVHTDLCGPQRTPSL 461

Query: 61  NGNLYYIAFINELTRMCWIFLLKQKSEVAGVFWKFKAKVENESVCLIQTIRSDNSKEYTL 120
           NGNLYYIAFINELTRMCWIFLLKQKSEVAGVFWKFKAKVEN+SVCLIQTIRSDNSKEYTL
Sbjct: 462 NGNLYYIAFINELTRMCWIFLLKQKSEVAGVFWKFKAKVENDSVCLIQTIRSDNSKEYTL 521

Query: 121 ETFNRFCEEAGIEHQLTASYTPQQNDVSERRNRFIMEMTRCMLHEKDLPKRFWGKAANTV 180
           ETFNRFCEEAGIEHQLTASYTPQQNDVSERRNRFIMEMTRCMLHEKDLPKRFWGKAANTV
Sbjct: 522 ETFNRFCEEAGIEHQLTASYTPQQNDVSERRNRFIMEMTRCMLHEKDLPKRFWGKAANTV 581

Query: 181 VCLQNRISTKDVKDLTPFEVWYGYKP-LKFVRVFGCLCFTYIPQ 224
           VCLQNRISTKDVKDLTPFEVWYGYKP LKFVRVFGCLCFTYIPQ
Sbjct: 582 VCLQNRISTKDVKDLTPFEVWYGYKPSLKFVRVFGCLCFTYIPQ 623

[Close]

BLAST of CmoCh09G003500 vs. NCBI nr
Match: XP_022927115.1 (uncharacterized protein LOC111434054 [Cucurbita moschata])

HSP 1 Score: 429.1 bits (1102), Expect = 2.9e-116
Identity = 203/224 (90.62%), Postives = 207/224 (92.41%), Query Frame = 0


Query: 1   MQSKKLVEGLTNIDDDMPPYRACNLGKQHRQPFPKQAWRASKKLQLVHTDLCGPQRTPSL 60
           +QSKKLVE LT+IDDDM PYRACN GKQHRQP PKQAWR SKKLQLVH DLCGPQRTPSL
Sbjct: 285 IQSKKLVEELTDIDDDMSPYRACNFGKQHRQPLPKQAWRGSKKLQLVHADLCGPQRTPSL 344

Query: 61  NGNLYYIAFINELTRMCWIFLLKQKSEVAGVFWKFKAKVENESVCLIQTIRSDNSKEYTL 120
           N NLYYIAFINELTR CWIFLLKQKSEVAGVFWKFKAKVE ES CLIQTIRSDNSKEYTL
Sbjct: 345 NDNLYYIAFINELTRKCWIFLLKQKSEVAGVFWKFKAKVEKESACLIQTIRSDNSKEYTL 404

Query: 121 ETFNRFCEEAGIEHQLTASYTPQQNDVSERRNRFIMEMTRCMLHEKDLPKRFWGKAANTV 180
           ETFNRFCEE GIEHQLTASYTPQQNDVSERRNRFIMEMTRCMLHEKDLPKRFWGKA NT+
Sbjct: 405 ETFNRFCEETGIEHQLTASYTPQQNDVSERRNRFIMEMTRCMLHEKDLPKRFWGKATNTI 464

Query: 181 VCLQNRISTKDVKDLTPFEVWYGYKP-LKFVRVFGCLCFTYIPQ 224
           +CLQNRISTK VKD TPFEVWYGYKP  KFVRVFGCLCF YIPQ
Sbjct: 465 MCLQNRISTKVVKDPTPFEVWYGYKPSSKFVRVFGCLCFIYIPQ 508

[Close]

BLAST of CmoCh09G003500 vs. NCBI nr
Match: XP_016690648.1 (uncharacterized protein LOC107944102 [Gossypium hirsutum])

HSP 1 Score: 394.4 bits (1012), Expect = 7.9e-106
Identity = 187/224 (83.48%), Postives = 199/224 (88.84%), Query Frame = 0


Query: 1   MQSKKLVEGLTNIDDDMPPYRACNLGKQHRQPFPKQAWRASKKLQLVHTDLCGPQRTPSL 60
           MQ K LVEGLT+IDDD+P  RAC  G+QHRQPFPKQAWRASKKLQLV TDLCGPQRTPSL
Sbjct: 246 MQMKNLVEGLTDIDDDLPHCRACKFGEQHRQPFPKQAWRASKKLQLVFTDLCGPQRTPSL 305

Query: 61  NGNLYYIAFINELTRMCWIFLLKQKSEVAGVFWKFKAKVENESVCLIQTIRSDNSKEYTL 120
           NGNLYYIAFI++LTRMCWIFLLK+K EVAGVFWKFKA+VEN S C+IQ +RSDN KEYT 
Sbjct: 306 NGNLYYIAFIDDLTRMCWIFLLKKKLEVAGVFWKFKARVENGSGCMIQILRSDNGKEYTS 365

Query: 121 ETFNRFCEEAGIEHQLTASYTPQQNDVSERRNRFIMEMTRCMLHEKDLPKRFWGKAANTV 180
           ETFNRFCEEAGIEHQLTA YTPQQN VSERRNR IMEMTRCMLHEK+LPK FWG+ ANT 
Sbjct: 366 ETFNRFCEEAGIEHQLTAPYTPQQNGVSERRNRLIMEMTRCMLHEKNLPKGFWGEVANTA 425

Query: 181 VCLQNRISTKDVKDLTPFEVWYGYKP-LKFVRVFGCLCFTYIPQ 224
           V LQNRISTK VKD TPFE WYGYKP LKF+RVFGCLCFT IPQ
Sbjct: 426 VFLQNRISTKAVKDQTPFEAWYGYKPSLKFLRVFGCLCFTCIPQ 469

[Close]

BLAST of CmoCh09G003500 vs. NCBI nr
Match: XP_022929937.1 (uncharacterized protein LOC111436393 [Cucurbita moschata])

HSP 1 Score: 354.4 bits (908), Expect = 9.1e-94
Identity = 174/224 (77.68%), Postives = 179/224 (79.91%), Query Frame = 0


Query: 1   MQSKKLVEGLTNIDDDMPPYRACNLGKQHRQPFPKQAWRASKKLQLVHTDLCGPQRTPSL 60
           MQSKKLVE LT ID+DM P R CN GKQHRQPFPKQAWRASKKLQLVHTDLCGPQRTPSL
Sbjct: 284 MQSKKLVEELTIIDEDMSPCRTCNFGKQHRQPFPKQAWRASKKLQLVHTDLCGPQRTPSL 343

Query: 61  NGNLYYIAFINELTRMCWIFLLKQKSEVAGVFWKFKAKVENESVCLIQTIRSDNSKEYTL 120
                                     +VAGVFWKFKAKVENE  CLIQT+RSDN KEYT 
Sbjct: 344 --------------------------DVAGVFWKFKAKVENEGACLIQTVRSDNGKEYTS 403

Query: 121 ETFNRFCEEAGIEHQLTASYTPQQNDVSERRNRFIMEMTRCMLHEKDLPKRFWGKAANTV 180
           ETFNRFCEEAGIEH LT  YTPQQN VS RRNRFIMEMTRCMLHEKDLPKRFWGKAANT+
Sbjct: 404 ETFNRFCEEAGIEHNLTTPYTPQQNGVSVRRNRFIMEMTRCMLHEKDLPKRFWGKAANTI 463

Query: 181 VCLQNRISTKDVKDLTPFEVWYGYKP-LKFVRVFGCLCFTYIPQ 224
           +CLQNRISTK VKD TPFEVWYGYKP LKFVRVFGCLCF YIPQ
Sbjct: 464 MCLQNRISTKVVKDPTPFEVWYGYKPSLKFVRVFGCLCFIYIPQ 481

[Close]

BLAST of CmoCh09G003500 vs. NCBI nr
Match: XP_003613757.4 (uncharacterized protein LOC11413243 [Medicago truncatula])

HSP 1 Score: 342.0 bits (876), Expect = 4.7e-90
Identity = 160/224 (71.43%), Postives = 182/224 (81.25%), Query Frame = 0


Query: 1   MQSKKLVEGLTNIDDDMPPYRACNLGKQHRQPFPKQAWRASKKLQLVHTDLCGPQRTPSL 60
           +QSKKLV  L  ++D +P  +AC  GKQHRQ FPK AWRA++KLQL+HTDLCGP RT SL
Sbjct: 478 LQSKKLVRDLPMLEDTLPHCQACQYGKQHRQSFPKSAWRATQKLQLIHTDLCGPHRTSSL 537

Query: 61  NGNLYYIAFINELTRMCWIFLLKQKSEVAGVFWKFKAKVENESVCLIQTIRSDNSKEYTL 120
           N +LYYI FI++ TR CWIF LK KSEVAGVF KFK  VENES C IQ +RSDN KEYT 
Sbjct: 538 NSSLYYIVFIDDFTRFCWIFFLKFKSEVAGVFLKFKKLVENESGCNIQVLRSDNGKEYTS 597

Query: 121 ETFNRFCEEAGIEHQLTASYTPQQNDVSERRNRFIMEMTRCMLHEKDLPKRFWGKAANTV 180
             FN FCEEAGI+HQLTA YTPQQN VSERRNR+IMEMTRCMLHEK+LPK+FW +AANT 
Sbjct: 598 GEFNSFCEEAGIKHQLTAPYTPQQNGVSERRNRYIMEMTRCMLHEKNLPKKFWAEAANTS 657

Query: 181 VCLQNRISTKDVKDLTPFEVWYGYKP-LKFVRVFGCLCFTYIPQ 224
           V LQNR+ T  VK+ TPFE WYGYKP L F++VFGCLCFTY+PQ
Sbjct: 658 VFLQNRLPTTAVKNQTPFEAWYGYKPSLNFLKVFGCLCFTYVPQ 701

The following BLAST results are available for this feature:

BLAST of CmoCh09G003500 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	1.3e-39	40.29	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	5.4e-33	34.78	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
Q9ZT94	3.1e-28	32.21	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
Q94HW2	1.6e-24	30.48	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
O13527	2.8e-13	27.81	Truncated transposon Ty1-A Gag-Pol polyprotein OS=Saccharomyces cerevisiae (stra...	[more]

BLAST of CmoCh09G003500 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1H529	6.3e-125	97.32	uncharacterized protein LOC111460124 OS=Cucurbita moschata OX=3662 GN=LOC1114601...	[more]
A0A6J1EMZ3	1.4e-116	90.63	uncharacterized protein LOC111434054 OS=Cucurbita moschata OX=3662 GN=LOC1114340...	[more]
A0A1U8N6D0	3.8e-106	83.48	uncharacterized protein LOC107907847 OS=Gossypium hirsutum OX=3635 GN=LOC1079441...	[more]
A0A6J1EP08	4.4e-94	77.68	uncharacterized protein LOC111436393 OS=Cucurbita moschata OX=3662 GN=LOC1114363...	[more]
A0A5A7TSS3	3.1e-87	66.52	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]

BLAST of CmoCh09G003500 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022959005.1	1.3e-124	97.32	uncharacterized protein LOC111460124 [Cucurbita moschata]	[more]
XP_022927115.1	2.9e-116	90.63	uncharacterized protein LOC111434054 [Cucurbita moschata]	[more]
XP_016690648.1	7.9e-106	83.48	uncharacterized protein LOC107944102 [Gossypium hirsutum]	[more]
XP_022929937.1	9.1e-94	77.68	uncharacterized protein LOC111436393 [Cucurbita moschata]	[more]
XP_003613757.4	4.7e-90	71.43	uncharacterized protein LOC11413243 [Medicago truncatula]	[more]

BLAST of CmoCh09G003500 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001584	Integrase, catalytic core	PFAM	PF00665	rve	coord: 42..142 e-value: 9.6E-11 score: 41.9
IPR001584	Integrase, catalytic core	PROSITE	PS50994	INTEGRASE	coord: 30..205 score: 19.448526
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 35..213 e-value: 7.9E-38 score: 131.7
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 28..198
None	No IPR available	PANTHER	PTHR11439:SF324	RIBONUCLEASE H-LIKE DOMAIN, GAG-PRE-INTEGRASE DOMAIN, GAG-POLYPEPTIDE OF LTR COPIA-TYPE-RELATED	coord: 28..198
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 43..207

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh09G003500.1	CmoCh09G003500.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006952	defense response
biological_process	GO:0015074	DNA integration
biological_process	GO:0007165	signal transduction
biological_process	GO:0055085	transmembrane transport
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0140359	ABC-type transporter activity
molecular_function	GO:0043531	ADP binding
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0003953	NAD+ nucleosidase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding