CmoCh09G003090 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh09G003090
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Pre-mRNA-processing protein 40A isoform X1
Location	Cmo_Chr09: 1331505 .. 1333446 (-)
RNA-Seq Expression	CmoCh09G003090
Synteny	CmoCh09G003090

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACCTGCAGCAACAGAGCCAATTCGAGAGGCAGAGTGGCTTTCTCGTGGGAGAATAAGCCAGGGGAGTGCAAGGCAGCAGTGGCGCCGCCGTTTTACCGCCTGGGCGACGACGATCTGGGGCAAAAGAAGCTGCGACCACCGCCGTGTACTTCGGCGAGAAAGGGCCAGAAGAAGGTGCAGAAAGATGGGGTCTTTGAAGACCCTTTTCTTGCGGCGTTCAGAGAGTGCAGCAATGGAGAGGACGAGAAGAATTGCAAGTTGAAGCAGAATAAAACTGAGTTTGGAGGGTGGATGAACTTGTTGGGTAATTTGTCTTGTAAGCACTTGAGGGCGGTTCGAGATGACAGTTTGATTAGCTCCCCTGTTTCCAAACTAACCATGTAGACGAAAGAAGCATGGCGTAGCTTGTACTATTTATAGAATTAGACCTTTGTAAAATTCAATAAGGATTACAACTTTTTGTTTATAATTTGTGGCTTAGATGCATTAAGGTTTGGTTGTATGGACATGATTTTCAATATATTTTAATATTCAAATGTGAAATTCATTTTTACTTTTTGTTTGATAATTTTGTATTTTTTAAAATTGTGTTTGGAGTTTTTTTATTTTTTATTTTTTCCTAATTAAACACTTAAATTTCTAGTTTATTTTTATTTTTTCAAGATTCAACTCAAAAATCAATTTATGGAAATAGATATATAGGAGTGTTTATAGTTTTCTACTTTTAAAATATGCGTTTGTTTAATTTCTATATTTATTGGCATTACATTTAAATTTGTAAATTTGTAGTCAAATTAAAAAAAATAAAAACAAAAATTTATTATTCAACTTTAAAAACGAATTCGCGGTGAAAGTCAAAGACAGCCTACAGAAGGCCTGACCGGCGAACGGTGGTTCCGACAGATAGCGACCATTATATATAGATCGGCGAGGGCGAATTTTAGTAAAGTCCATTACGAAAGGGGTTAATTCTGGAACGCGGTAAATAATTTTTTAGCCGCCGATAACTCCCCCCTCTCAACTTCTCCGTACTCTCGATCAGTTCCATCTCTGCCACTTCCTCGCTTAAACCCTAAAAACTCGATTTTACCCACAGCTTCGTGATCCGACCACTCCGGTTTCTTACCCGCTACCATACTGGGTTTGGCGCCACCAATTTTCCCACCGCAACTTCAAACAACAGCCGTAACTGTGAGTAATCTCCCTCTCTCTTTATCTCTAGGCGCTTTGGGTTATTGGATTCTGCATCTTCCATCTAGTTTCATAGAAAATTTCCGGCAACGGGAAGGGATTTGAAAAACCATGTTTAACGAGGAGATGGGTTCGTCACAAATATTGATATTTGGTTATATTCTTTAAGAACACCGCGGTTTACCTCAAGGAAGTGACGTCTAGTGGTAGAAAATGATTCGGGTTTGCAGAAGCATCGGGGAGCTAATTGTATTCTTCATCACTCCTTCGATAGGAATCGATGTCTCTTGTGAATCGGTCTATCATTTTTCCGCTGTGTCATTCTCCGTCATGCCAATTTACTGTTATGCGGTAACATTGTGATTTCTTGGAGATTGTTAATCTTAAGAGTGAAGTGTGCGGTGATATTCTCACTCACGCTGCATGCGATTGGTTTGTTTCTTCTATCCCCGCTACGAATTTGGAGGTTGAGAATGTATTAGGAAACAAGAAAGATGATGGGACAAGATGTTCCGTTGTTTATTCACTTCTTCGTGATCTAACAGTTGTTCATTCCATGCCTAACCATTCGGGTTTTTTTCGTCATAAATAACGTTTTGAGACGTTCAGTTTACGAAATTCTGACATATTTTCTAGTTCTCTTCCTGCTTTCTTTAATATTTCTATGTTGTTTGCAGTTGGGTCTCTATTTCTTGCTTTTGGTGGGCTTCAACTGGAAGTTGGCTTAGCTGATCTGTTGGTATTGTGA

mRNA sequence

ATGACCTGCAGCAACAGAGCCAATTCGAGAGGCAGAGTGGCTTTCTCGTGGGAGAATAAGCCAGGGGAGTGCAAGGCAGCAGTGGCGCCGCCGTTTTACCGCCTGGGCGACGACGATCTGGGGCAAAAGAAGCTGCGACCACCGCCGTGTACTTCGGCGAGAAAGGGCCAGAAGAAGGTGCAGAAAGATGGGGTCTTTGAAGACCCTTTTCTTGCGGCGTTCAGAGAGTGCAGCAATGGAGAGGACGAGAAGAATTGCAAGTTGAAGCAGAATAAAACTGAGTTTGGAGGGTGGATGAACTTGTTGGGTAATTTGTCTTGTAAGCACTTGAGGGCGGTTCGAGATGACAGTTTGATTAGCTCCCCTGTTTCCAAACTAACCATCTTCGTGATCCGACCACTCCGGTTTCTTACCCGCTACCATACTGGGTTTGGCGCCACCAATTTTCCCACCGCAACTTCAAACAACAGCCGTAACTTTGGGTCTCTATTTCTTGCTTTTGGTGGGCTTCAACTGGAAGTTGGCTTAGCTGATCTGTTGGTATTGTGA

Coding sequence (CDS)

ATGACCTGCAGCAACAGAGCCAATTCGAGAGGCAGAGTGGCTTTCTCGTGGGAGAATAAGCCAGGGGAGTGCAAGGCAGCAGTGGCGCCGCCGTTTTACCGCCTGGGCGACGACGATCTGGGGCAAAAGAAGCTGCGACCACCGCCGTGTACTTCGGCGAGAAAGGGCCAGAAGAAGGTGCAGAAAGATGGGGTCTTTGAAGACCCTTTTCTTGCGGCGTTCAGAGAGTGCAGCAATGGAGAGGACGAGAAGAATTGCAAGTTGAAGCAGAATAAAACTGAGTTTGGAGGGTGGATGAACTTGTTGGGTAATTTGTCTTGTAAGCACTTGAGGGCGGTTCGAGATGACAGTTTGATTAGCTCCCCTGTTTCCAAACTAACCATCTTCGTGATCCGACCACTCCGGTTTCTTACCCGCTACCATACTGGGTTTGGCGCCACCAATTTTCCCACCGCAACTTCAAACAACAGCCGTAACTTTGGGTCTCTATTTCTTGCTTTTGGTGGGCTTCAACTGGAAGTTGGCTTAGCTGATCTGTTGGTATTGTGA

Protein sequence

MTCSNRANSRGRVAFSWENKPGECKAAVAPPFYRLGDDDLGQKKLRPPPCTSARKGQKKVQKDGVFEDPFLAAFRECSNGEDEKNCKLKQNKTEFGGWMNLLGNLSCKHLRAVRDDSLISSPVSKLTIFVIRPLRFLTRYHTGFGATNFPTATSNNSRNFGSLFLAFGGLQLEVGLADLLVL

Homology

[Close]

BLAST of CmoCh09G003090 vs. ExPASy TrEMBL
Match: A0A5A7VA56 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G002450 PE=4 SV=1)

HSP 1 Score: 187.2 bits (474), Expect = 6.1e-44
Identity = 94/133 (70.68%), Postives = 107/133 (80.45%), Query Frame = 0


Query: 1   MTCSNRANSRGRVAFSWENKPGECKAAVAPP--FYRLGDDDLGQKKLRPPPCTSARKGQK 60
           M C+N+ +SRGRVAFSWEN+PG CKAAVAPP  F    DDD  +KKL+PPPCT ARKG K
Sbjct: 1   MACNNKTHSRGRVAFSWENRPGVCKAAVAPPNRFCDDNDDDPLKKKLQPPPCTPARKGNK 60

Query: 61  K-VQKDGVFEDPFLAAFRECSNGEDEKNCKLKQNKTEFGGW--MNLLGNLSCKHLRAVRD 120
           K +QKDG  EDPFLAA+REC++ +DEKNCKLK+NK  FGGW  MN  GNLSCK L AVRD
Sbjct: 61  KLLQKDGGAEDPFLAAYRECTSEDDEKNCKLKKNKYGFGGWMTMNFFGNLSCKQLTAVRD 120

Query: 121 DSLISSPVSKLTI 129
           DSLISSPVSK T+
Sbjct: 121 DSLISSPVSKRTV 133

[Close]

BLAST of CmoCh09G003090 vs. ExPASy TrEMBL
Match: A0A0A0L2M9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G644710 PE=4 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 1.5e-42
Identity = 88/130 (67.69%), Postives = 103/130 (79.23%), Query Frame = 0


Query: 1   MTCSNRANSRGRVAFSWENKPGECKAAVAPPFYRLGDDDLGQKKLRPPPCTSARKGQKKV 60
           M C+N+ +SRGRVAFSWENKPG CKAAVAPP      DD  +K+L+PPPCT ARKG KK+
Sbjct: 1   MACNNKTHSRGRVAFSWENKPGVCKAAVAPPHGFCDGDDPLKKQLQPPPCTPARKGNKKL 60

Query: 61  QKDGVFEDPFLAAFRECSNGEDEKNCKLKQNKTEFGGWM--NLLGNLSCKHLRAVRDDSL 120
           QKDG  EDPFLAA++EC++ +DEK CKLK+NK+ FGGWM  N   NLSCK L AVRDDSL
Sbjct: 61  QKDGGAEDPFLAAYKECTSEDDEKTCKLKKNKSGFGGWMTTNFFCNLSCKQLTAVRDDSL 120

Query: 121 ISSPVSKLTI 129
           ISSP SK T+
Sbjct: 121 ISSPDSKRTV 130

[Close]

BLAST of CmoCh09G003090 vs. ExPASy TrEMBL
Match: E0CNY8 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_18s0001g08660 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 1.4e-08
Identity = 55/161 (34.16%), Postives = 75/161 (46.58%), Query Frame = 0


Query: 5   NRANSRGRVAFSWENKPGECKAAVAPPFYRLGDDDLGQK------KLRPPPC-------- 64
           ++ +S+G V F+WENKPG CKA       R  D+D          KL+PPPC        
Sbjct: 4   SKIHSQGNVPFAWENKPGVCKA-------RRDDEDCPTDTGHFVIKLQPPPCPLEKGRPS 63

Query: 65  -------------------TSARKGQKKVQKDGVFEDPFLAAFRECSNGEDEKNCKLKQN 124
                               S++KG  + Q     EDPFLAA++EC+    +   K    
Sbjct: 64  VHGSQIPLPPCTFQGPPSRNSSKKGHLRKQ-----EDPFLAAYKECT----KNTRKGHDG 123

Query: 125 KTEFGGWMNLLGNLSCKHLRAVRDDSLISSPVSKLTIFVIR 133
           KT  G   + + NLSCKH   VRDD+L+S   S+L+  V R
Sbjct: 124 KTHLG--RSSMFNLSCKHSCNVRDDNLVSK--SRLSALVSR 144

[Close]

BLAST of CmoCh09G003090 vs. ExPASy TrEMBL
Match: A0A059BJ61 (Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_F00095 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 7.1e-08
Identity = 50/153 (32.68%), Postives = 68/153 (44.44%), Query Frame = 0


Query: 7   ANSRGRVAFSWENKPG--------ECKAAVAPPFYRLGDDDLGQKKLRPPPC-------- 66
           ++ RG V F+WEN+PG        +C+  ++PP   + D      KL PPPC        
Sbjct: 2   SDPRGNVPFAWENRPGVSKAIARSDCEELLSPP-PSIKDRRRFPTKLPPPPCPRMDGLRV 61

Query: 67  --------------------TSARKGQKKVQKDGVFEDPFLAAFRECSN----GEDEKNC 120
                               +S +KG KK   D    DPFLAA+REC+     G   K+ 
Sbjct: 62  SVGREMQIPLPPCAFQPPRRSSLKKGTKKQDDD---NDPFLAAYRECTEGTKVGHRHKSS 121

[Close]

BLAST of CmoCh09G003090 vs. ExPASy TrEMBL
Match: A0A4D6L0H4 (Uncharacterized protein OS=Vigna unguiculata OX=3917 GN=DEO72_LG2g1890 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 1.6e-07
Identity = 44/137 (32.12%), Postives = 71/137 (51.82%), Query Frame = 0


Query: 6   RANSRGRVAFSWENKPGECKA---------AVAPPFYRLGDD------DLGQKKLRPPPC 65
           +++S G + FSWE+KPG CK           ++P    LG +      ++ +KK+  PPC
Sbjct: 5   KSHSHGSIPFSWEDKPGVCKTPNNDFPLNIGMSPLPPPLGPNHLRRMVEIEEKKIPLPPC 64

Query: 66  TSARKGQKKVQKDGVF---EDPFLAAFRECSNGEDEKNCKL-KQNKTEFGGWMNLLGNL- 123
                 +   +K+  F   EDPFL A++EC+  + EKNCK+ ++NK   G    L  ++ 
Sbjct: 65  PLQGPRRSTSEKEKGFRWQEDPFLVAYKECT--KSEKNCKVGRKNKKGVGSNFRLSRSIF 124

[Close]

BLAST of CmoCh09G003090 vs. NCBI nr
Match: KAG7024319.1 (hypothetical protein SDJN02_13133, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 284.3 bits (726), Expect = 7.6e-73
Identity = 146/182 (80.22%), Postives = 147/182 (80.77%), Query Frame = 0


Query: 1   MTCSNRANSRGRVAFSWENKPGECKAAVAPPFYRLGDDDLGQKKLRPPPCTSARKGQKKV 60
           MTCSNRA+SRGRVAFSWENKPGECKAAVAPPFYRLGDDDLGQKKLRPPPCTSARKGQKKV
Sbjct: 1   MTCSNRAHSRGRVAFSWENKPGECKAAVAPPFYRLGDDDLGQKKLRPPPCTSARKGQKKV 60

Query: 61  QKDGVFEDPFLAAFRECSNGEDEKNCKLKQNKTEFGGWMNLLGNLSCKHLRAVRDDSLIS 120
           QKDGVFEDPFLAAFRECSNGEDEKNCKLKQNKT                           
Sbjct: 61  QKDGVFEDPFLAAFRECSNGEDEKNCKLKQNKTG-------------------------- 120

Query: 121 SPVSKLTIFVIRPLRFLTRYHTGFGATNFPTATSNNSRNFGSLFLAFGGLQLEVGLADLL 180
                   FVIRPLRFLTRYHTGFGATNFPTATSNNSRNFGSLFLAFGGLQLEVGLADLL
Sbjct: 121 --------FVIRPLRFLTRYHTGFGATNFPTATSNNSRNFGSLFLAFGGLQLEVGLADLL 148

Query: 181 VL 183
           VL
Sbjct: 181 VL 148

[Close]

BLAST of CmoCh09G003090 vs. NCBI nr
Match: KAG6591440.1 (Pre-mRNA-processing protein 40A, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 281.6 bits (719), Expect = 4.9e-72
Identity = 143/180 (79.44%), Postives = 145/180 (80.56%), Query Frame = 0


Query: 1   MTCSNRANSRGRVAFSWENKPGECKAAVAPPFYRLGDDDLGQKKLRPPPCTSARKGQKKV 60
           MTCSNRA+SRGRVAFSWENKPGECKAAVAPPFYRLGDDDLGQKKLRPPPCTSARKGQKKV
Sbjct: 1   MTCSNRAHSRGRVAFSWENKPGECKAAVAPPFYRLGDDDLGQKKLRPPPCTSARKGQKKV 60

Query: 61  QKDGVFEDPFLAAFRECSNGEDEKNCKLKQNKTEFGGWMNLLGNLSCKHLRAVRDDSLIS 120
           QKDGVFEDPFLAAFRECSNGEDEKNCKLKQNKT                           
Sbjct: 61  QKDGVFEDPFLAAFRECSNGEDEKNCKLKQNKTG-------------------------- 120

Query: 121 SPVSKLTIFVIRPLRFLTRYHTGFGATNFPTATSNNSRNFGSLFLAFGGLQLEVGLADLL 180
                   FVIRPLRFLTRYHTGFGATNFPTATSNNSRNFGSLFLAFGGLQLE+GLADLL
Sbjct: 121 --------FVIRPLRFLTRYHTGFGATNFPTATSNNSRNFGSLFLAFGGLQLEIGLADLL 146

[Close]

BLAST of CmoCh09G003090 vs. NCBI nr
Match: KAA0064468.1 (hypothetical protein E6C27_scaffold255G001830 [Cucumis melo var. makuwa] >TYK20120.1 hypothetical protein E5676_scaffold134G002450 [Cucumis melo var. makuwa])

HSP 1 Score: 187.2 bits (474), Expect = 1.3e-43
Identity = 94/133 (70.68%), Postives = 107/133 (80.45%), Query Frame = 0


Query: 1   MTCSNRANSRGRVAFSWENKPGECKAAVAPP--FYRLGDDDLGQKKLRPPPCTSARKGQK 60
           M C+N+ +SRGRVAFSWEN+PG CKAAVAPP  F    DDD  +KKL+PPPCT ARKG K
Sbjct: 1   MACNNKTHSRGRVAFSWENRPGVCKAAVAPPNRFCDDNDDDPLKKKLQPPPCTPARKGNK 60

Query: 61  K-VQKDGVFEDPFLAAFRECSNGEDEKNCKLKQNKTEFGGW--MNLLGNLSCKHLRAVRD 120
           K +QKDG  EDPFLAA+REC++ +DEKNCKLK+NK  FGGW  MN  GNLSCK L AVRD
Sbjct: 61  KLLQKDGGAEDPFLAAYRECTSEDDEKNCKLKKNKYGFGGWMTMNFFGNLSCKQLTAVRD 120

Query: 121 DSLISSPVSKLTI 129
           DSLISSPVSK T+
Sbjct: 121 DSLISSPVSKRTV 133

[Close]

BLAST of CmoCh09G003090 vs. NCBI nr
Match: KAE8649893.1 (hypothetical protein Csa_012691 [Cucumis sativus])

HSP 1 Score: 127.1 bits (318), Expect = 1.5e-25
Identity = 58/88 (65.91%), Postives = 70/88 (79.55%), Query Frame = 0


Query: 1  MTCSNRANSRGRVAFSWENKPGECKAAVAPPFYRLGDDDLGQKKLRPPPCTSARKGQKKV 60
          M C+N+ +SRGRVAFSWENKPG CKAAVAPP      DD  +K+L+PPPCT ARKG KK+
Sbjct: 1  MACNNKTHSRGRVAFSWENKPGVCKAAVAPPHGFCDGDDPLKKQLQPPPCTPARKGNKKL 60

Query: 61 QKDGVFEDPFLAAFRECSNGEDEKNCKL 89
          QKDG  EDPFLAA++EC++ +DEK C L
Sbjct: 61 QKDGGAEDPFLAAYKECTSEDDEKTCPL 88

[Close]

BLAST of CmoCh09G003090 vs. NCBI nr
Match: CBI19366.3 (unnamed protein product, partial [Vitis vinifera])

HSP 1 Score: 69.7 bits (169), Expect = 2.9e-08
Identity = 55/161 (34.16%), Postives = 75/161 (46.58%), Query Frame = 0


Query: 5   NRANSRGRVAFSWENKPGECKAAVAPPFYRLGDDDLGQK------KLRPPPC-------- 64
           ++ +S+G V F+WENKPG CKA       R  D+D          KL+PPPC        
Sbjct: 4   SKIHSQGNVPFAWENKPGVCKA-------RRDDEDCPTDTGHFVIKLQPPPCPLEKGRPS 63

Query: 65  -------------------TSARKGQKKVQKDGVFEDPFLAAFRECSNGEDEKNCKLKQN 124
                               S++KG  + Q     EDPFLAA++EC+    +   K    
Sbjct: 64  VHGSQIPLPPCTFQGPPSRNSSKKGHLRKQ-----EDPFLAAYKECT----KNTRKGHDG 123

Query: 125 KTEFGGWMNLLGNLSCKHLRAVRDDSLISSPVSKLTIFVIR 133
           KT  G   + + NLSCKH   VRDD+L+S   S+L+  V R
Sbjct: 124 KTHLG--RSSMFNLSCKHSCNVRDDNLVSK--SRLSALVSR 144

The following BLAST results are available for this feature:

BLAST of CmoCh09G003090 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh09G003090 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VA56	6.1e-44	70.68	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0L2M9	1.5e-42	67.69	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G644710 PE=4 SV=1	[more]
E0CNY8	1.4e-08	34.16	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_18s0001g08660 PE=4 SV=...	[more]
A0A059BJ61	7.1e-08	32.68	Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_F00095 PE=4 SV...	[more]
A0A4D6L0H4	1.6e-07	32.12	Uncharacterized protein OS=Vigna unguiculata OX=3917 GN=DEO72_LG2g1890 PE=4 SV=1	[more]

BLAST of CmoCh09G003090 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7024319.1	7.6e-73	80.22	hypothetical protein SDJN02_13133, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6591440.1	4.9e-72	79.44	Pre-mRNA-processing protein 40A, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAA0064468.1	1.3e-43	70.68	hypothetical protein E6C27_scaffold255G001830 [Cucumis melo var. makuwa] >TYK201...	[more]
KAE8649893.1	1.5e-25	65.91	hypothetical protein Csa_012691 [Cucumis sativus]	[more]
CBI19366.3	2.9e-08	34.16	unnamed protein product, partial [Vitis vinifera]	[more]

BLAST of CmoCh09G003090 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 38..61
None	No IPR available	PANTHER	PTHR33696	T22J18.15-RELATED	coord: 5..125
None	No IPR available	PANTHER	PTHR33696:SF15	SUBFAMILY NOT NAMED	coord: 5..125

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh09G003090.1	CmoCh09G003090.1	mRNA