CmoCh09G002790 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh09G002790
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionUnknown protein
LocationCmo_Chr09: 1244959 .. 1246591 (+)
RNA-Seq ExpressionCmoCh09G002790
SyntenyCmoCh09G002790
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GCGGGTGACTGCTGCAGCGACCCGCGCTCGCACGATTCCCCTGTTCCGACAGCGACAATCGCTTAAAACGAACCTCGAATCGCTTCGAGTTCTTGTCCCATGCTCCGATTGATCTCGGATCTGAAAAACCGCGATTCGACGGCTTCAGTTCGTGCCCCACTCGCCTCTTTGTTTCAACTTCTTCGCTCTCCAAGAGATTCTCTATATGCCATTGCACTTCGGGTATCTAAACCTATTGGCCATTGATTGACGGTATATAATTTCAGTTAGAACTATACGTTTTTACTTCTTGTCATATTCATTCATGGATCTATATGTTCATACATTATAATTATAACAGTTTACTGATTAAGTTAGATTAGATAGTGATACATTACTCTCTGACTGCTAACATATGCCCTACCATTTGATTCATTCGCTATCCTCTTCTGGCTTTCATATTTTGTGATATTTTATATTAATCAGTTAGATTGGAAGCCACCCCATGTCATTAATCATTGTGGATAGCAAATATAGAACTTTAGTTTTCAAAAGATAGCTAAATATAGGATGCGTGGTTGATGAAAAGCACAGATTCGTTAAAAGTAGAGCATAGAAGAGATCACCTGCAACAAAATTCCCAATAGAGGTTTTCATTTTCCATTTCCCTCGAACTCATGTCATTTTCAAATCAAAATCCAAACTGCCCCCTGAAATATTGACAGAAGCAATCCAAATTTGGTTGGAGACTGACATCCAAGAGGAAACCAAGAGAAAAAGAAAGGGCTATGTGTGTTATGAATCCATGATTGATCATTAAAGCATGGAGAGGAATGGGCAAGGTATGTTTGAATACACACATCCTCTTTATCCTCCTGCCCCTTGTGGTTGCTTATATTGTGTCATCTGCTTGTCATAGACCACTTGTTTTTATCAAAAATACCCATTTGATGCCAATTCACTGCCCCCCATGTGCTGCACACTTCCCGCTTGGATCGGCAAGAAATAAGAGACCGACCGATCTGCAGGGTGCAGGGTGCAGGGTGCAGGCGCAGGCCAGTCAAACCCTCGGAATTTGACTACTGCAAGTTCAGGTGGGGACAGAACCATAACCATAACCAGAACTACAGAACCGTTTTCTATTAATGTGCGTGATAAGCAAAACTTACTTTTACTGACAAACCCACTTGGTATTTTCAATCTTCCTCCTCACCGACATCCACCTAACTCCCACCACTATTCCATTGGTTTTGTTTCCACTTAATTTCCTTATTTATGTTGTTTTTGTTTTCGCACATGGGAGTTGCAGAGAAATGGAGGCCGGAAGTGATTGATTGTGAAAGATTGAAGATTTCCTTGCAATTCCGATGGGGCGTTAAAGGGCGCAAAGGTACAGCCATGGGCTTCCCGTTGGTTTTTGCAATTGCCTTTTGATTATCATCATCTTCAAGGCAAGAGCTTGGGTATTGCTTTAAAGGCATACCCAAGTTCTGTCACTCTAATATATTGCTTCTGCCTTTTGATTACCATCATTTTCATGGATCAAAGGACTATTTTATTCGACATATATCAATTTTTTAATTAGAATTTTTAATAGAAAGAGAAGAAATCTCGTTTTCTTAATATAAATAGACTCCTAATTTGAGAAAAACAG

mRNA sequence

GCGGGTGACTGCTGCAGCGACCCGCGCTCGCACGATTCCCCTGTTCCGACAGCGACAATCGCTTAAAACGAACCTCGAATCGCTTCGAGTTCTTGTCCCATGCTCCGATTGATCTCGGATCTGAAAAACCGCGATTCGACGGCTTCAGTTCGTGCCCCACTCGCCTCTTTGTTTCAACTTCTTCGCTCTCCAAGAGATTCTCTATATGCCATTGCACTTCGGGGTGCAGGCGCAGGCCAGTCAAACCCTCGGAATTTGACTACTGCAAGTTCAGAGAAATGGAGGCCGGAAGTGATTGATTGTGAAAGATTGAAGATTTCCTTGCAATTCCGATGGGGCGTTAAAGGGCGCAAAGGTACAGCCATGGGCTTCCCGTTGGTTTTTGCAATTGCCTTTTGATTATCATCATCTTCAAGGCAAGAGCTTGGGTATTGCTTTAAAGGCATACCCAAGTTCTGTCACTCTAATATATTGCTTCTGCCTTTTGATTACCATCATTTTCATGGATCAAAGGACTATTTTATTCGACATATATCAATTTTTTAATTAGAATTTTTAATAGAAAGAGAAGAAATCTCGTTTTCTTAATATAAATAGACTCCTAATTTGAGAAAAACAG

Coding sequence (CDS)

ATGCTCCGATTGATCTCGGATCTGAAAAACCGCGATTCGACGGCTTCAGTTCGTGCCCCACTCGCCTCTTTGTTTCAACTTCTTCGCTCTCCAAGAGATTCTCTATATGCCATTGCACTTCGGGGTGCAGGCGCAGGCCAGTCAAACCCTCGGAATTTGACTACTGCAAGTTCAGAGAAATGGAGGCCGGAAGTGATTGATTGTGAAAGATTGAAGATTTCCTTGCAATTCCGATGGGGCGTTAAAGGGCGCAAAGGTACAGCCATGGGCTTCCCGTTGGTTTTTGCAATTGCCTTTTGA

Protein sequence

MLRLISDLKNRDSTASVRAPLASLFQLLRSPRDSLYAIALRGAGAGQSNPRNLTTASSEKWRPEVIDCERLKISLQFRWGVKGRKGTAMGFPLVFAIAF
Homology
[Close]
BLAST of CmoCh09G002790 vs. NCBI nr
Match: KAG7024301.1 (hypothetical protein SDJN02_13115 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 89.0 bits (219), Expect = 2.5e-14
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 0 

Query: 59 EKWRPEVIDCERLKISLQFRWGVKGRKGTAMGFPLVFAIA 99
          EKWRPEVIDCERLKISLQFRWGVKGRKGTAMGFPLVFAIA
Sbjct: 7  EKWRPEVIDCERLKISLQFRWGVKGRKGTAMGFPLVFAIA 46

[Close]
BLAST of CmoCh09G002790 vs. NCBI nr
Match: KAG6591421.1 (Cyclin-D5-1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 64.7 bits (156), Expect = 5.1e-07
Identity = 30/36 (83.33%), Postives = 32/36 (88.89%), Query Frame = 0 

Query: 58 SEKWRPEVIDCERLKISLQFRWGVKGRKGTAMGFPL 94
          +EKWRPEVIDCERLKISLQFRWGVKGRK   +G PL
Sbjct: 4  AEKWRPEVIDCERLKISLQFRWGVKGRK--EIGSPL 37

The following BLAST results are available for this feature:
BLAST of CmoCh09G002790 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh09G002790 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh09G002790 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7024301.12.5e-14100.00hypothetical protein SDJN02_13115 [Cucurbita argyrosperma subsp. argyrosperma][more]
KAG6591421.15.1e-0783.33Cyclin-D5-1, partial [Cucurbita argyrosperma subsp. sororia][more]
BLAST of CmoCh09G002790 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh09G002790.1CmoCh09G002790.1mRNA