CmoCh09G002530 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh09G002530
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionUnknown protein
LocationCmo_Chr09: 1139289 .. 1140499 (+)
RNA-Seq ExpressionCmoCh09G002530
SyntenyCmoCh09G002530
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGCTTGCTTTCGAAGATGGGTAAATTCTTTTCTGTCTCTCTCTCTCTCTTTTTTTTTTTTTTTCTCTCAATTCTACCGTCAAAAACCATGCACCGCTATTGCACCTAAAAGCCTTTTTCTTTATTCTCTTGCTTTTGCGACTGAAAGCTCAACCAATGTCTGAGGGTACATTATGTGTAGGCTTTTTAGAAAATGACACAAGCTTTTGTGCATTAACATGCTCTTTACTAGGTGCTAGCAAAGATCAAAACTGTATCATTCTGGAAAAACCACATTGCAATCTGAGACGACCCATTTTCAAAAATACAAAATTTCTTCTGCCAGAAAGTGGTTGGTTGGTTGGAAATTCTTTGAAGGATTTCACTTGCAAGGTCTGAAAAGTTCGGGGTTGAAAAGTCAAACAAGCACTTAGTATGAATTTATTATTATACTAACCGAGGTTTTTATGTTGAACCTCGCAAGTTACATACTATGTTCTTCGGATCAAACACAGTTGAAGTTTTGAATAATACTGTGTTTGTGAGCATAATCTCAAAAGTTCTGAGGTATATAAATATCGACGAAATTATTGGGATTTTTATCTTTGTTTCTTCTGATTTCAATCATTATTGAATTAAAGATTGAATTATAGATCTTTAAGATGCCAATCAATAGCTATCCTTGAATTGGTGGCATTATTTGAAAGTAAAGTCACGTGGATGTACATTCTTAGCCGGCTTAGTATCTATTAGTTTGTACCTAAAATAATTGTTATTCAAATTCTTACAGGTGTTCATGGGAAACATGTAACTGAAAAGTCCAACGTCGGTGACAACAGAATCACAAATGGCAGGGGCAGTACAGCCATCCATCTGCAGCTTGCACTGTTGAGAAAAATCAAAATTGTTGCAACCCAATCCACAATCAGATTGGGTAGTGAAACCATGATGATTACGGGTGTACTATTACCCGACCCGACACAAAGCAAAAAACTGGAAGAAAAAAATATTCCATGTGGGGATCCTGCACACATGCAGCATCATCAGGTATCGTGGTTGCGTGATTTGAGCACAGTTTAGGATTAGAGAAAGCTCCTGAATTATAATGAAAACCCATGAATGTCTTCGATTATTTAGACAGGTTCAATCAGATTTGTCTGTATGCAGTTCAATTTCAGCCCAAATCTAAAACTACAAGACTTTTTATGTCAACCCCTTTGAAAAGGCCTA

mRNA sequence

ATGTGCTTGCTTTCGAAGATGGGTGTTCATGGGAAACATGTAACTGAAAAGTCCAACGTCGGTGACAACAGAATCACAAATGGCAGGGGCAGTACAGCCATCCATCTGCAGCTTGCACTGTTGAGAAAAATCAAAATTGTTGCAACCCAATCCACAATCAGATTGGGTAGTGAAACCATGATGATTACGGGTGTACTATTACCCGACCCGACACAAAGCAAAAAACTGGAAGAAAAAAATATTCCATGTGGGGATCCTGCACACATGCAGCATCATCAGGTATCGTGGTTGCGTGATTTGAGCACAGTTTAGGATTAGAGAAAGCTCCTGAATTATAATGAAAACCCATGAATGTCTTCGATTATTTAGACAGGTTCAATCAGATTTGTCTGTATGCAGTTCAATTTCAGCCCAAATCTAAAACTACAAGACTTTTTATGTCAACCCCTTTGAAAAGGCCTA

Coding sequence (CDS)

ATGTGCTTGCTTTCGAAGATGGGTGTTCATGGGAAACATGTAACTGAAAAGTCCAACGTCGGTGACAACAGAATCACAAATGGCAGGGGCAGTACAGCCATCCATCTGCAGCTTGCACTGTTGAGAAAAATCAAAATTGTTGCAACCCAATCCACAATCAGATTGGGTAGTGAAACCATGATGATTACGGGTGTACTATTACCCGACCCGACACAAAGCAAAAAACTGGAAGAAAAAAATATTCCATGTGGGGATCCTGCACACATGCAGCATCATCAGGTATCGTGGTTGCGTGATTTGAGCACAGTTTAG

Protein sequence

MCLLSKMGVHGKHVTEKSNVGDNRITNGRGSTAIHLQLALLRKIKIVATQSTIRLGSETMMITGVLLPDPTQSKKLEEKNIPCGDPAHMQHHQVSWLRDLSTV
Homology
[Close]
BLAST of CmoCh09G002530 vs. ExPASy TrEMBL
Match: A0A6J1F8J5 (uncharacterized protein LOC111443292 OS=Cucurbita moschata OX=3662 GN=LOC111443292 PE=4 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 1.8e-45
Identity = 94/98 (95.92%), Postives = 96/98 (97.96%), Query Frame = 0 

Query: 1  MCLLSKMGVHGKHVTEKSNVGDNRITNGRGSTAIHLQLALLRKIKIVATQSTIRLGSETM 60
          MCLLSKMGVHGKHVTEKSNVGDNRITNGRGSTAIHLQLALLRKIKIVATQSTIRLGSETM
Sbjct: 1  MCLLSKMGVHGKHVTEKSNVGDNRITNGRGSTAIHLQLALLRKIKIVATQSTIRLGSETM 60

Query: 61 MITGVLLPDPTQSKKLEEKNIPCGDPAHMQHHQVSWLR 99
          MITGVLLPDPTQSKKLEEKNIPCGDPAHMQHHQ++  R
Sbjct: 61 MITGVLLPDPTQSKKLEEKNIPCGDPAHMQHHQLAAFR 98

[Close]
BLAST of CmoCh09G002530 vs. NCBI nr
Match: KAG6591400.1 (hypothetical protein SDJN03_13746, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 209.9 bits (533), Expect = 1.0e-50
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0 

Query: 1   MCLLSKMGVHGKHVTEKSNVGDNRITNGRGSTAIHLQLALLRKIKIVATQSTIRLGSETM 60
           MCLLSKMGVHGKHVTEKSNVGDNRITNGRGSTAIHLQLALLRKIKIVATQSTIRLGSETM
Sbjct: 1   MCLLSKMGVHGKHVTEKSNVGDNRITNGRGSTAIHLQLALLRKIKIVATQSTIRLGSETM 60

Query: 61  MITGVLLPDPTQSKKLEEKNIPCGDPAHMQHHQVSWLRDLSTV 104
           MITGVLLPDPTQSKKLEEKNIPCGDPAHMQHHQVSWLRDLSTV
Sbjct: 61  MITGVLLPDPTQSKKLEEKNIPCGDPAHMQHHQVSWLRDLSTV 103

[Close]
BLAST of CmoCh09G002530 vs. NCBI nr
Match: XP_022936821.1 (uncharacterized protein LOC111443292 [Cucurbita moschata])

HSP 1 Score: 191.4 bits (485), Expect = 3.8e-45
Identity = 94/98 (95.92%), Postives = 96/98 (97.96%), Query Frame = 0 

Query: 1  MCLLSKMGVHGKHVTEKSNVGDNRITNGRGSTAIHLQLALLRKIKIVATQSTIRLGSETM 60
          MCLLSKMGVHGKHVTEKSNVGDNRITNGRGSTAIHLQLALLRKIKIVATQSTIRLGSETM
Sbjct: 1  MCLLSKMGVHGKHVTEKSNVGDNRITNGRGSTAIHLQLALLRKIKIVATQSTIRLGSETM 60

Query: 61 MITGVLLPDPTQSKKLEEKNIPCGDPAHMQHHQVSWLR 99
          MITGVLLPDPTQSKKLEEKNIPCGDPAHMQHHQ++  R
Sbjct: 61 MITGVLLPDPTQSKKLEEKNIPCGDPAHMQHHQLAAFR 98

The following BLAST results are available for this feature:
BLAST of CmoCh09G002530 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh09G002530 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1F8J51.8e-4595.92uncharacterized protein LOC111443292 OS=Cucurbita moschata OX=3662 GN=LOC1114432... [more]
BLAST of CmoCh09G002530 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6591400.11.0e-50100.00hypothetical protein SDJN03_13746, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022936821.13.8e-4595.92uncharacterized protein LOC111443292 [Cucurbita moschata][more]
BLAST of CmoCh09G002530 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh09G002530.1CmoCh09G002530.1mRNA