CmoCh09G002480 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh09G002480
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionUnknown protein
LocationCmo_Chr09: 1118328 .. 1121881 (+)
RNA-Seq ExpressionCmoCh09G002480
SyntenyCmoCh09G002480
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAAGAGGAGGTGGGGTTAGTGGGTCCCAGACGGTTTTCCTATCTTTTTTACCGGATACCGGAAGTAGTTTCCACCCACAAGTCACCTTGGATTCCTTTCTTCCTTCAAACTAATTCAATTTTCAATCTCATTGGGCTTTTCCGCTTTTCCGGGCCCAACCCGCAAGGTCTTCTCCAGGAGAGGAGACCAACCTTCAAAGCATCACAAATTTTTAAAACCTTTTTCTTTTTCTTTTTCTTTTTCTCCCCTAAAAGATTTCATTTCCTTCAAGAAGGAGAAAAGGAACCAAATATATTTTATTTTATTTTTTGAAATGTATGAATTTAAATTTTAGAATCTGCTTTTGGGTTTGACAAACATTGTACATTTTTTCCATATGTTGTGGGTTCGAGTACTTTACTGTTTTTGAGTGAATTAGATTCCAATTTATTTATTTTTTTAATATTTGGATAAACCCAAACAAGAATTTGAGATTTAATATTTAGTTTAATTCAGACAACCAAATGGAGTGAGAGGCAGATTGGGCAGAAATTTGAAGATTCCATTAATATAATTAACCAAGTTTTCAAATTCCATTTGCAATACCAAAAATGGAGGCCAATTTGAGACTAAATTGTTGACTTTCTTTCGGTATTCAAATCCCTTGAATCGAGGAGCTCTTTAAATTCTTTCTTCCCCTTTTTTCATAAACAATTTCAATTGGACGACCGAAATTAATTGAACTTAAAAACACGTATTATGAAATGCCATTCTTCATTTTATTTCTTTCATGTGTACGTAGAAGACAATACATTCACATACAGAAACAAAAGTCACAAAATCGTAATCGACCTTTCCAAAAGACGAGGGACAAATGGTTTGAAAATATTTGAAATTGAATTAATTTGGTTGTAAAAGGGGAAAGATTCAAACATCCATTTTAAATTTGAGTTCTGGAAAAGCTTTGGGACCAATGACCCAATTTGGTGGTCCTTTCACATATATGAGCATTTACTGTACATCCAAATGTAACGCCAAATATATTTTATTCAAATCCTAGGTCTTTAATAGGGTATAGGGTAATAAAATATACACCATTTATTTTCTTGGTATTATTAAAGCTTCCATTTTTTTTTCATTACTTTATGACAAGTTAATTAGGCGCAGACATGGGAAATTAGGCGTATGCACTAAACCAATTAGCTACAAATGAAGTAGTGCTACTTCTTCATTTCATAGTTGGAATGCAAGACGGCAAGATAAGGTTGAATGAATAGGCATCACCTTTGCTCTTAGCTCACATTTTCAACTTCCACATTTCCATAATTCATATTACTTCTATAATTGAACTTCGTTTCCTACGATAATGTCGTGTTCTTGCTAGGTTTTTTTTTTATCAAATTAATTCAAATTCATTAATGTTCGATGTGACGAAATTTTTGGAGATAGAACGATTACTATTTTAGTTTGCAAATATTAATTAGTCAATGTTTGGCTCAGGTATGTCGATTTTCTAGTACATACACATTAAGAATCAAACATTAATCATTAATAATTTTTAGAGAATTGGAAAAGTGATTGATAAGAGGTGACGTGGAATTAGGTTATGAACAAGAGGTGACCAAATGAGATGACCCATAATGAGGTAACCTACAAAAGAGAAAGAAAGAGTTGCGCAACCGTGTGGAACTTACCACACTAGTTTAGAGAATTGGAAAGAACTTATCTTTTATGGAGCTATGATGATATATATAGGAGAGTTGATGCGAGTTTTCCATTCTCCTTTTGAATAGGTTCAAATAAATAAAGTTGGTCTAACGAACGAGACATGAGTAGGGGACTACAAAAGGCAAGCCCTACGAGGAGAAAAAAATGCCTCCTTCCCTAAGGCTAGTTTGGTCCTGCGTTGAATTTTAGGGTCCGTCCTTCTATCCTCCTCGAGTTCGATGGATATCAGACCCATACTGCCTTATTCTTATCATCGATATCATTTTTTCCTCTTAAATTTATATCTAAGTGTAACAACTTAAACTCACTGTTGCTAACAGATATTGTCCTCTTTGTGCTTTCCCCTCTAGTTTTCTTCAACGTTTCAAAACTGGTCTCCTAGAAAGAGGTTTCCACCCCTTATAAGAAATGTTTCGTTCTCTTTTCGAACCAACGTGAGATCACGAATGAAAGCGAGGAATTGGGAATTGGGGGCAGAAGTTAGAGATAGGAAATGGTTGAAAAGGAGGCCGGAAAGGAAAGGGCAAGGCAAGTGGCGGTGCATGTGATGCGTCAAGTGGGCATAAGAACCAGAGAAAGCCCAAATCAAACGCCTGTTTTGTAGATAAAGAGATTGCGTGGTTGTGGCCTCTCAGCTCACCCACCCCAACTTGGCCGATCACTGGATATCATTATTGTTAGTAACGTATGGGCCGCAAGCCCATGCTTCTGTGTCTTCTTCTTCTTCCTCCTCCTCAGTCTTAGCTTCCCACGTGAATACACTTTCAAACCACATCCACTCTGTTACTTTAATCACCCAAATATTTTCCTTTTTTCTAAATTATAAAAAATACCCATCAGCCCTATATCAACCAACTATCCAAAAAAGAAAAAAAAAAGGCTGACAAACTACGTTCGAGAGAGATTAGTTGCGTGCAAACTTCCTCCACTGTTCGTTGTGTCGTATGCAATCGATAGGTTAACTAAAAAAGAACACGATGATACAATCGAAATGACAGATAATTCGAAATGAAATGTCGCACCATCCACTTTTGGGCCAAACAAAAAAGAAAGCTAAATATCAACATTTGGGAAGAAGACATGTTTGTCCCAACCAAATATCAATAATGAAATAATAATAGTAATCTGATAAGGACATTTTTGGTATATTGGAAATTATTAAATGAATTAAAATTACAGTTTGTGTTTGGAAAATATAAAATAAAACAATTTCAATACGAGAAAAGAGGGTTTGTGAAATTAATTAAAAAAGATAAAAGTTGTATTGATGTCCCGCAAAAGATATTAAAAATAAAGGAACAAATGTCTTAATCCCGAGTGGAATCTCGATTTGATTATTAATTAAATACAATCAAGTGAGGGAGTAAATTACAGAAATGGGGTAAAGAGGAAGATGGGAATTGTCAACAGGCAGGGGCAAGAGCAGTAATAATATCATGGCGTAATAGCCTCAATGTGCATCTACCAATAGTAATGCAGCAAGTGGGGCCCACTAGCTATCCGTCTCAATGTAAACCATTCGATCTCATCATCACGTGGGCAGTCCTGAATCGCTCGAATCCAATTTATCCGCTTCTATTATTTACTTTATACTTTATTTTAATTCGTTTCGAAATTATGTATAGTTTATTGAAGCTTCTACTCTAAATTATTACACTTTGATAATCCCACTTATATTTATTTTTTTATTTTTTAAGAATCATAATATTAAATATTTAATTGATGAAAAGAAAATAAAATTTCAATCGTATTTGAAATGTTATCCACCCTGTTCAGGGCTTAGTGTCTTTGATGGCTCACCGCCCAATCCACCGGTGGATCTTAGAGTCCATGAAACAATATGA

mRNA sequence

ATGCAAGAGGAGGTGGGTTGGAATGCAAGACGGCAAGATAAGCTCACCCACCCCAACTTGGCCGATCACTGGATATCATTATTGTTAGTAACGTATGGGCCGCAAGCCCATGCTTCTGTGTCTTCTTCTTCTTCCTCCTCCTCAGTCTTAGCTTCCCACGCAGGGGCAAGAGCAGTAATAATATCATGGCGTAATAGCCTCAATGTGCATCTACCAATAGTAATGCAGCAAGTGGGGCCCACTAGCTATCCGTCTCAATGGCTTAGTGTCTTTGATGGCTCACCGCCCAATCCACCGGTGGATCTTAGAGTCCATGAAACAATATGA

Coding sequence (CDS)

ATGCAAGAGGAGGTGGGTTGGAATGCAAGACGGCAAGATAAGCTCACCCACCCCAACTTGGCCGATCACTGGATATCATTATTGTTAGTAACGTATGGGCCGCAAGCCCATGCTTCTGTGTCTTCTTCTTCTTCCTCCTCCTCAGTCTTAGCTTCCCACGCAGGGGCAAGAGCAGTAATAATATCATGGCGTAATAGCCTCAATGTGCATCTACCAATAGTAATGCAGCAAGTGGGGCCCACTAGCTATCCGTCTCAATGGCTTAGTGTCTTTGATGGCTCACCGCCCAATCCACCGGTGGATCTTAGAGTCCATGAAACAATATGA

Protein sequence

MQEEVGWNARRQDKLTHPNLADHWISLLLVTYGPQAHASVSSSSSSSSVLASHAGARAVIISWRNSLNVHLPIVMQQVGPTSYPSQWLSVFDGSPPNPPVDLRVHETI
Homology
[Close]
BLAST of CmoCh09G002480 vs. NCBI nr
Match: KAG7024272.1 (hypothetical protein SDJN02_13086, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 75.9 bits (185), Expect = 2.4e-10
Identity = 38/40 (95.00%), Postives = 39/40 (97.50%), Query Frame = 0 

Query: 14 KLTHPNLADHWISLLLVTYGPQAHASVSSSSSSSSVLASH 54
          +LTHPNLADHWISLLLVTYGPQAHASVSSSSSSSS LASH
Sbjct: 21 QLTHPNLADHWISLLLVTYGPQAHASVSSSSSSSSFLASH 60

The following BLAST results are available for this feature:
BLAST of CmoCh09G002480 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh09G002480 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh09G002480 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7024272.12.4e-1095.00hypothetical protein SDJN02_13086, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of CmoCh09G002480 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh09G002480.1CmoCh09G002480.1mRNA