CmoCh09G002150 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh09G002150
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
Descriptioncalcium-binding protein CML39-like
LocationCmo_Chr09: 999343 .. 999612 (-)
RNA-Seq ExpressionCmoCh09G002150
SyntenyCmoCh09G002150
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGTTCTTCCGTCCAAAAATGAATTCGAAGAGCGCCTACTCAGCGAAGGAACTGAAAGAGATCTTCCACCAGATGGATACAAATGAAGACGGCGGGTTGGGATTGTTTGAGATCAAGAACGCATTGAAGCAACTCGACGCTGAATTTCCAATCCATCTTGCCTACAAGGCTCTCTGTCACGCCGATCGGAACATAGATGGAAAGCTTGGCGAGGAGGAGATCGATGAATTTGTCAAGTACATGTTGAGCGAAGGCTATGTTGTATGA

mRNA sequence

ATGTCGTTCTTCCGTCCAAAAATGAATTCGAAGAGCGCCTACTCAGCGAAGGAACTGAAAGAGATCTTCCACCAGATGGATACAAATGAAGACGGCGGGTTGGGATTGTTTGAGATCAAGAACGCATTGAAGCAACTCGACGCTGAATTTCCAATCCATCTTGCCTACAAGGCTCTCTGTCACGCCGATCGGAACATAGATGGAAAGCTTGGCGAGGAGGAGATCGATGAATTTGTCAAGTACATGTTGAGCGAAGGCTATGTTGTATGA

Coding sequence (CDS)

ATGTCGTTCTTCCGTCCAAAAATGAATTCGAAGAGCGCCTACTCAGCGAAGGAACTGAAAGAGATCTTCCACCAGATGGATACAAATGAAGACGGCGGGTTGGGATTGTTTGAGATCAAGAACGCATTGAAGCAACTCGACGCTGAATTTCCAATCCATCTTGCCTACAAGGCTCTCTGTCACGCCGATCGGAACATAGATGGAAAGCTTGGCGAGGAGGAGATCGATGAATTTGTCAAGTACATGTTGAGCGAAGGCTATGTTGTATGA

Protein sequence

MSFFRPKMNSKSAYSAKELKEIFHQMDTNEDGGLGLFEIKNALKQLDAEFPIHLAYKALCHADRNIDGKLGEEEIDEFVKYMLSEGYVV
Homology
BLAST of CmoCh09G002150 vs. ExPASy TrEMBL
Match: A0A0A0L3J7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G639750 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 5.3e-33
Identity = 73/95 (76.84%), Postives = 84/95 (88.42%), Query Frame = 0

Query: 2  SFFRPK-------MNSKSAYSAKELKEIFHQMDTNEDGGLGLFEIKNALKQLDAEFPIHL 61
          S FRPK       ++S+SAYSAKEL++IF+QMDTNEDGGLGLFEIKNALK+LDAE P+HL
Sbjct: 3  SMFRPKTKSNSPPVSSESAYSAKELRQIFNQMDTNEDGGLGLFEIKNALKKLDAEMPVHL 62

Query: 62 AYKALCHADRNIDGKLGEEEIDEFVKYMLSEGYVV 90
          AY ALCHADRN DGKLGEEEID+FVKYM+S+GYVV
Sbjct: 63 AYSALCHADRNRDGKLGEEEIDQFVKYMMSKGYVV 97

BLAST of CmoCh09G002150 vs. ExPASy TrEMBL
Match: A0A5D3D9N2 (Putative calcium-binding protein CML10 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G003460 PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 1.7e-31
Identity = 67/82 (81.71%), Postives = 79/82 (96.34%), Query Frame = 0

Query: 8  MNSKSAYSAKELKEIFHQMDTNEDGGLGLFEIKNALKQLDAEFPIHLAYKALCHADRNID 67
          ++S+SAYSAKEL++IF+QMDTNEDGGLGLFEIKNALK+LDAE P+HLAY ALC+ADRN D
Sbjct: 8  VSSESAYSAKELRQIFNQMDTNEDGGLGLFEIKNALKKLDAEMPVHLAYSALCYADRNRD 67

Query: 68 GKLGEEEIDEFVKYMLSEGYVV 90
          GKLGEEEID+FVKYM+S+GYVV
Sbjct: 68 GKLGEEEIDQFVKYMMSKGYVV 89

BLAST of CmoCh09G002150 vs. ExPASy TrEMBL
Match: A0A6A1UYX3 (Putative calcium-binding protein CML10 OS=Morella rubra OX=262757 GN=CJ030_MR0G017070 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 4.1e-09
Identity = 33/76 (43.42%), Postives = 48/76 (63.16%), Query Frame = 0

Query: 14  YSAKELKEIFHQMDTNEDGGLGLFEIKNALKQLDAEFPIHLAYKALCHADRNIDGKLGEE 73
           Y+ ++L+ +F + DTN DG L   E++NA + L +  P   A++AL HADRN DG++ E 
Sbjct: 31  YTGEQLRGMFKRFDTNGDGQLSRQELRNAFRSLGSAAPGWRAFRALGHADRNGDGQISEA 90

Query: 74  EIDEFVKYMLSEGYVV 90
           E+D  V Y L  GY V
Sbjct: 91  ELDNLVGYALKHGYTV 106

BLAST of CmoCh09G002150 vs. ExPASy TrEMBL
Match: W9S022 (Putative calcium-binding protein CML10 OS=Morus notabilis OX=981085 GN=L484_000100 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 7.0e-09
Identity = 33/78 (42.31%), Postives = 46/78 (58.97%), Query Frame = 0

Query: 12  SAYSAKELKEIFHQMDTNEDGGLGLFEIKNALKQLDAEFPIHLAYKALCHADRNIDGKLG 71
           + Y  ++LK +  + DT+ DG L   E+K A K+L A  P   A +ALCHAD+N DG + 
Sbjct: 23  AVYDKEKLKSVIRRYDTDGDGNLSRKELKKAFKELGATAPGWRAIRALCHADKNRDGFIS 82

Query: 72  EEEIDEFVKYMLSEGYVV 90
           EEE+   V Y    GYV+
Sbjct: 83  EEELANLVHYAAQRGYVL 100

BLAST of CmoCh09G002150 vs. ExPASy TrEMBL
Match: A0A5C7H7G7 (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_021561 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 7.0e-09
Identity = 31/70 (44.29%), Postives = 46/70 (65.71%), Query Frame = 0

Query: 18  ELKEIFHQMDTNEDGGLGLFEIKNALKQLDAEFPIHLAYKALCHADRNIDGKLGEEEIDE 77
           ELK    + D N+DG L   E++ AL++LD+ FP   +++AL HAD N DG + E+E+D 
Sbjct: 137 ELKNWLRKFDENQDGHLSKEELEKALEELDSSFPAWRSWRALYHADENGDGYISEDELDG 196

Query: 78  FVKYMLSEGY 88
            VKY++  GY
Sbjct: 197 LVKYIIKRGY 206

BLAST of CmoCh09G002150 vs. NCBI nr
Match: KAG7024250.1 (hypothetical protein SDJN02_13064, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 180.6 bits (457), Expect = 5.8e-42
Identity = 87/89 (97.75%), Postives = 88/89 (98.88%), Query Frame = 0

Query: 1  MSFFRPKMNSKSAYSAKELKEIFHQMDTNEDGGLGLFEIKNALKQLDAEFPIHLAYKALC 60
          MSFFRPK+NSKSAYS KELKEIFHQMDTNEDGGLGLFEIKNALKQLDAEFPIHLAYKALC
Sbjct: 1  MSFFRPKLNSKSAYSTKELKEIFHQMDTNEDGGLGLFEIKNALKQLDAEFPIHLAYKALC 60

Query: 61 HADRNIDGKLGEEEIDEFVKYMLSEGYVV 90
          HADRNIDGKLGEEEIDEFVKYMLSEGYVV
Sbjct: 61 HADRNIDGKLGEEEIDEFVKYMLSEGYVV 89

BLAST of CmoCh09G002150 vs. NCBI nr
Match: KGN55187.1 (hypothetical protein Csa_012728 [Cucumis sativus])

HSP 1 Score: 149.8 bits (377), Expect = 1.1e-32
Identity = 73/95 (76.84%), Postives = 84/95 (88.42%), Query Frame = 0

Query: 2  SFFRPK-------MNSKSAYSAKELKEIFHQMDTNEDGGLGLFEIKNALKQLDAEFPIHL 61
          S FRPK       ++S+SAYSAKEL++IF+QMDTNEDGGLGLFEIKNALK+LDAE P+HL
Sbjct: 3  SMFRPKTKSNSPPVSSESAYSAKELRQIFNQMDTNEDGGLGLFEIKNALKKLDAEMPVHL 62

Query: 62 AYKALCHADRNIDGKLGEEEIDEFVKYMLSEGYVV 90
          AY ALCHADRN DGKLGEEEID+FVKYM+S+GYVV
Sbjct: 63 AYSALCHADRNRDGKLGEEEIDQFVKYMMSKGYVV 97

BLAST of CmoCh09G002150 vs. NCBI nr
Match: KAA0064378.1 (putative calcium-binding protein CML10 [Cucumis melo var. makuwa] >TYK20209.1 putative calcium-binding protein CML10 [Cucumis melo var. makuwa])

HSP 1 Score: 144.8 bits (364), Expect = 3.5e-31
Identity = 67/82 (81.71%), Postives = 79/82 (96.34%), Query Frame = 0

Query: 8  MNSKSAYSAKELKEIFHQMDTNEDGGLGLFEIKNALKQLDAEFPIHLAYKALCHADRNID 67
          ++S+SAYSAKEL++IF+QMDTNEDGGLGLFEIKNALK+LDAE P+HLAY ALC+ADRN D
Sbjct: 8  VSSESAYSAKELRQIFNQMDTNEDGGLGLFEIKNALKKLDAEMPVHLAYSALCYADRNRD 67

Query: 68 GKLGEEEIDEFVKYMLSEGYVV 90
          GKLGEEEID+FVKYM+S+GYVV
Sbjct: 68 GKLGEEEIDQFVKYMMSKGYVV 89

BLAST of CmoCh09G002150 vs. NCBI nr
Match: KAG7037807.1 (hypothetical protein SDJN02_01438, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 140.2 bits (352), Expect = 8.7e-30
Identity = 64/80 (80.00%), Postives = 75/80 (93.75%), Query Frame = 0

Query: 10  SKSAYSAKELKEIFHQMDTNEDGGLGLFEIKNALKQLDAEFPIHLAYKALCHADRNIDGK 69
           S+S YSAKEL+EIF+QMDTNEDGGLGLFEIK ALKQLDAEFP+HLA+KALC +DRN DGK
Sbjct: 55  SESGYSAKELREIFNQMDTNEDGGLGLFEIKEALKQLDAEFPVHLAFKALCQSDRNRDGK 114

Query: 70  LGEEEIDEFVKYMLSEGYVV 90
           LG +EID+F+KY++SEGYVV
Sbjct: 115 LGRDEIDKFIKYLMSEGYVV 134

BLAST of CmoCh09G002150 vs. NCBI nr
Match: KAG6608479.1 (hypothetical protein SDJN03_01821, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 140.2 bits (352), Expect = 8.7e-30
Identity = 64/80 (80.00%), Postives = 75/80 (93.75%), Query Frame = 0

Query: 10  SKSAYSAKELKEIFHQMDTNEDGGLGLFEIKNALKQLDAEFPIHLAYKALCHADRNIDGK 69
           S+S YSAKEL+EIF+QMDTNEDGGLGLFEIK ALKQLDAEFP+HLA+KALC +DRN DGK
Sbjct: 55  SESGYSAKELREIFNQMDTNEDGGLGLFEIKEALKQLDAEFPVHLAFKALCQSDRNRDGK 114

Query: 70  LGEEEIDEFVKYMLSEGYVV 90
           LG +EID+F+KY++SEGYVV
Sbjct: 115 LGRDEIDKFIKYLMSEGYVV 134

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0L3J75.3e-3376.84Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G639750 PE=4 SV=1[more]
A0A5D3D9N21.7e-3181.71Putative calcium-binding protein CML10 OS=Cucumis melo var. makuwa OX=1194695 GN... [more]
A0A6A1UYX34.1e-0943.42Putative calcium-binding protein CML10 OS=Morella rubra OX=262757 GN=CJ030_MR0G0... [more]
W9S0227.0e-0942.31Putative calcium-binding protein CML10 OS=Morus notabilis OX=981085 GN=L484_0001... [more]
A0A5C7H7G77.0e-0944.29Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_021561 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
KAG7024250.15.8e-4297.75hypothetical protein SDJN02_13064, partial [Cucurbita argyrosperma subsp. argyro... [more]
KGN55187.11.1e-3276.84hypothetical protein Csa_012728 [Cucumis sativus][more]
KAA0064378.13.5e-3181.71putative calcium-binding protein CML10 [Cucumis melo var. makuwa] >TYK20209.1 pu... [more]
KAG7037807.18.7e-3080.00hypothetical protein SDJN02_01438, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6608479.18.7e-3080.00hypothetical protein SDJN03_01821, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002048EF-hand domainSMARTSM00054efh_1coord: 54..82
e-value: 59.0
score: 3.5
coord: 18..46
e-value: 0.11
score: 21.6
IPR002048EF-hand domainPROSITEPS50222EF_HAND_2coord: 14..49
score: 11.75176
NoneNo IPR availableGENE3D1.10.238.10coord: 1..87
e-value: 1.8E-11
score: 46.0
IPR011992EF-hand domain pairSUPERFAMILY47473EF-handcoord: 5..79

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh09G002150.1CmoCh09G002150.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005509 calcium ion binding