CmoCh09G001400 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh09G001400
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	50S ribosomal protein L31
Location	Cmo_Chr09: 637470 .. 638367 (-)
RNA-Seq Expression	CmoCh09G001400
Synteny	CmoCh09G001400

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGGGCCCGAAAAGCAGGCCTCCATCAGGAAGGCCCATATCAAGGCTCAAAACTAGCAGGCCCAAAAGAGAAGGACGAGCGAGTGGCCATGCGACAATGCCTTGAAGAAGAACTCATCTTCTTCTTATCCTCACTTCATCGCACTCAAACGCAGCAATGGCGCTGAACCTAACGAATTCCTTTCTTCAACGCCCAATTTCCCCGGTCGTCGCACCGCCGAAGAAAAAGGTACTTTCCCCTTATTCTCACTCCTAAATGTTACGACAGCGGGGCCTGTACATTTATTTTTTCCTAAATTTCGGCGCAATTTCCAGGAATTTGGAGCGAGAAGTCACCGGGCGGTGGTGACCTGCCGGAAAAAGGATCTGCACCCCCAATTCCACGAGGATGCTAAGGTTTATTGCAATGGAGAGCTGGTGATGACGACGGGTGGGACCCAGAAAGAGTACTCGGTGGATGTGTGGTCGGGAAATCACCCTTTCTATTTAGGCAGCCGCTCTGCCCTGCTCGTCGACGCCGATCAGGTCGAGAAATTCCGCAAGAAATTCGGAGAGCTGTCGCAGTTGATGGAGATTCCTGTCCTTAAAGGGGAAATCGTTCTGCCCACGAAACGAAAATCCGGCGGCAAAGGGAAGAAAAAATAGAAGAGTGCGGAGAGTTCAGTTGGCCTGGTAATCTTTTTTAAATTCAACTACTTAATACGATTTTGGGGTTTTCTCTTGTATTTCATGTATGTAATTTAGAACAATCGAAACTAATTTGTCTGAATCGAACAATTTGTTTCTGTTTGTCGCTTGCATTGCGTCGCTGTTTGTTGAGAATCATCAATGCCGATGAACAGTTCGATGAAACTCAATTGGTTAATCATAAAACATTAATTAAAATAGAATAAAATTATG

mRNA sequence

TGGGCCCGAAAAGCAGGCCTCCATCAGGAAGGCCCATATCAAGGCTCAAAACTAGCAGGCCCAAAAGAGAAGGACGAGCGAGTGGCCATGCGACAATGCCTTGAAGAAGAACTCATCTTCTTCTTATCCTCACTTCATCGCACTCAAACGCAGCAATGGCGCTGAACCTAACGAATTCCTTTCTTCAACGCCCAATTTCCCCGGTCGTCGCACCGCCGAAGAAAAAGGAATTTGGAGCGAGAAGTCACCGGGCGGTGGTGACCTGCCGGAAAAAGGATCTGCACCCCCAATTCCACGAGGATGCTAAGGTTTATTGCAATGGAGAGCTGGTGATGACGACGGGTGGGACCCAGAAAGAGTACTCGGTGGATGTGTGGTCGGGAAATCACCCTTTCTATTTAGGCAGCCGCTCTGCCCTGCTCGTCGACGCCGATCAGGTCGAGAAATTCCGCAAGAAATTCGGAGAGCTGTCGCAGTTGATGGAGATTCCTGTCCTTAAAGGGGAAATCGTTCTGCCCACGAAACGAAAATCCGGCGGCAAAGGGAAGAAAAAATAGAAGAGTGCGGAGAGTTCAGTTGGCCTGGTAATCTTTTTTAAATTCAACTACTTAATACGATTTTGGGGTTTTCTCTTGTATTTCATGTATGTAATTTAGAACAATCGAAACTAATTTGTCTGAATCGAACAATTTGTTTCTGTTTGTCGCTTGCATTGCGTCGCTGTTTGTTGAGAATCATCAATGCCGATGAACAGTTCGATGAAACTCAATTGGTTAATCATAAAACATTAATTAAAATAGAATAAAATTATG

Coding sequence (CDS)

ATGGCGCTGAACCTAACGAATTCCTTTCTTCAACGCCCAATTTCCCCGGTCGTCGCACCGCCGAAGAAAAAGGAATTTGGAGCGAGAAGTCACCGGGCGGTGGTGACCTGCCGGAAAAAGGATCTGCACCCCCAATTCCACGAGGATGCTAAGGTTTATTGCAATGGAGAGCTGGTGATGACGACGGGTGGGACCCAGAAAGAGTACTCGGTGGATGTGTGGTCGGGAAATCACCCTTTCTATTTAGGCAGCCGCTCTGCCCTGCTCGTCGACGCCGATCAGGTCGAGAAATTCCGCAAGAAATTCGGAGAGCTGTCGCAGTTGATGGAGATTCCTGTCCTTAAAGGGGAAATCGTTCTGCCCACGAAACGAAAATCCGGCGGCAAAGGGAAGAAAAAATAG

Protein sequence

MALNLTNSFLQRPISPVVAPPKKKEFGARSHRAVVTCRKKDLHPQFHEDAKVYCNGELVMTTGGTQKEYSVDVWSGNHPFYLGSRSALLVDADQVEKFRKKFGELSQLMEIPVLKGEIVLPTKRKSGGKGKKK

Homology

[Close]

BLAST of CmoCh09G001400 vs. ExPASy Swiss-Prot
Match: Q9FWS4 (50S ribosomal protein L31, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL31 PE=2 SV=1)

HSP 1 Score: 189.1 bits (479), Expect = 3.2e-47
Identity = 99/146 (67.81%), Postives = 113/146 (77.40%), Query Frame = 0


Query: 1   MALNLTNSFLQRPISPVV-----------APPKKKEFGARSHRAVV--TCRKKDLHPQFH 60
           MA++L NSFLQ  ISP V           A    K+   RS   VV  TCRKK+LHP+FH
Sbjct: 1   MAVSLPNSFLQ--ISPCVPSLQLRKPVMAAVKGGKQSVRRSSNTVVQITCRKKELHPEFH 60

Query: 61  EDAKVYCNGELVMTTGGTQKEYSVDVWSGNHPFYLGSRSALLVDADQVEKFRKKFGELSQ 120
           EDAKVYCNGELVMTTGGT+KEY VDVWSGNHPFYLG+RSAL+VDADQVEKFRK+F  LS+
Sbjct: 61  EDAKVYCNGELVMTTGGTKKEYVVDVWSGNHPFYLGNRSALMVDADQVEKFRKRFAGLSE 120

Query: 121 LMEIPVLKGEIVLPTKRKSGGKGKKK 134
           +MEIPVLKGEI++PTK+  G KGKKK
Sbjct: 121 IMEIPVLKGEIIMPTKKSKGPKGKKK 144

[Close]

BLAST of CmoCh09G001400 vs. ExPASy Swiss-Prot
Match: P82249 (50S ribosomal protein L31, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL31 PE=1 SV=2)

HSP 1 Score: 176.4 bits (446), Expect = 2.1e-43
Identity = 89/134 (66.42%), Postives = 107/134 (79.85%), Query Frame = 0


Query: 1   MALNLTNSFLQR-PISPVVAPPKKKEFGARSHRAVVTCRKKDLHPQFHEDAKVYCNGELV 60
           M L L+N FL + P +P      K    + + R   +CRK D+HP+F EDAKVYCNGELV
Sbjct: 1   MVLTLSNQFLAKIPATPKTLTLPKT--SSSTLRPQWSCRKSDIHPEFREDAKVYCNGELV 60

Query: 61  MTTGGTQKEYSVDVWSGNHPFYLGSRSALLVDADQVEKFRKKFGELSQLMEIPVLKGEIV 120
           MTTGGTQK+Y+V+VWSGNHPFYLG+RSALL+DADQVEKFRKK+GEL+Q+MEIPVLKGEI+
Sbjct: 61  MTTGGTQKDYTVEVWSGNHPFYLGNRSALLLDADQVEKFRKKYGELTQIMEIPVLKGEII 120

Query: 121 LPTKRKSGGKGKKK 134
           LP K+KS  K KKK
Sbjct: 121 LPPKKKS--KAKKK 130

[Close]

BLAST of CmoCh09G001400 vs. ExPASy Swiss-Prot
Match: Q7V9Y9 (50S ribosomal protein L31 OS=Prochlorococcus marinus (strain SARG / CCMP1375 / SS120) OX=167539 GN=rpmE PE=3 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 1.7e-16
Identity = 37/65 (56.92%), Postives = 50/65 (76.92%), Query Frame = 0


Query: 39  KKDLHPQFHEDAKVYCNGELVMTTGGTQKEYSVDVWSGNHPFYLGSRSALLVDADQVEKF 98
           KKD+HP ++ DAKV CNGE+VMTTG TQ E  VDVWSGNHPF+ G++  L  +  +V++F
Sbjct: 3   KKDIHPNWYPDAKVICNGEVVMTTGSTQPEIHVDVWSGNHPFFTGTQKILDTEG-RVDRF 62

Query: 99  RKKFG 104
            +K+G
Sbjct: 63  MRKYG 66

[Close]

BLAST of CmoCh09G001400 vs. ExPASy Swiss-Prot
Match: Q31L35 (50S ribosomal protein L31 OS=Synechococcus elongatus (strain PCC 7942 / FACHB-805) OX=1140 GN=rpmE PE=3 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 1.7e-16
Identity = 39/68 (57.35%), Postives = 52/68 (76.47%), Query Frame = 0


Query: 39  KKDLHPQFHEDAKVYCNGELVMTTGGTQKEYSVDVWSGNHPFYLGSRSALLVDAD-QVEK 98
           K D+HPQ++ +AKVYCNGE VMT G TQ E  VDVWSGNHPFY G++   ++D + +VE+
Sbjct: 3   KADIHPQWYPEAKVYCNGEEVMTVGSTQPELHVDVWSGNHPFYTGTQK--IIDTEGRVER 62

Query: 99  FRKKFGEL 106
           F +K+G L
Sbjct: 63  FLRKYGML 68

[Close]

BLAST of CmoCh09G001400 vs. ExPASy Swiss-Prot
Match: Q5N0T7 (50S ribosomal protein L31 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) OX=269084 GN=rpmE PE=3 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 1.7e-16
Identity = 39/68 (57.35%), Postives = 52/68 (76.47%), Query Frame = 0


Query: 39  KKDLHPQFHEDAKVYCNGELVMTTGGTQKEYSVDVWSGNHPFYLGSRSALLVDAD-QVEK 98
           K D+HPQ++ +AKVYCNGE VMT G TQ E  VDVWSGNHPFY G++   ++D + +VE+
Sbjct: 3   KADIHPQWYPEAKVYCNGEEVMTVGSTQPELHVDVWSGNHPFYTGTQK--IIDTEGRVER 62

Query: 99  FRKKFGEL 106
           F +K+G L
Sbjct: 63  FLRKYGML 68

[Close]

BLAST of CmoCh09G001400 vs. ExPASy TrEMBL
Match: A0A6J1FCM8 (50S ribosomal protein L31 OS=Cucurbita moschata OX=3662 GN=LOC111442881 PE=3 SV=1)

HSP 1 Score: 273.1 bits (697), Expect = 6.2e-70
Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 0


Query: 1   MALNLTNSFLQRPISPVVAPPKKKEFGARSHRAVVTCRKKDLHPQFHEDAKVYCNGELVM 60
           MALNLTNSFLQRPISPVVAPPKKKEFGARSHRAVVTCRKKDLHPQFHEDAKVYCNGELVM
Sbjct: 1   MALNLTNSFLQRPISPVVAPPKKKEFGARSHRAVVTCRKKDLHPQFHEDAKVYCNGELVM 60

Query: 61  TTGGTQKEYSVDVWSGNHPFYLGSRSALLVDADQVEKFRKKFGELSQLMEIPVLKGEIVL 120
           TTGGTQKEYSVDVWSGNHPFYLGSRSALLVDADQVEKFRKKFGELSQLMEIPVLKGEIVL
Sbjct: 61  TTGGTQKEYSVDVWSGNHPFYLGSRSALLVDADQVEKFRKKFGELSQLMEIPVLKGEIVL 120

Query: 121 PTKRKSGGKGKKK 134
           PTKRKSGGKGKKK
Sbjct: 121 PTKRKSGGKGKKK 133

[Close]

BLAST of CmoCh09G001400 vs. ExPASy TrEMBL
Match: A0A6J1IKY2 (50S ribosomal protein L31 OS=Cucurbita maxima OX=3661 GN=LOC111475090 PE=3 SV=1)

HSP 1 Score: 272.7 bits (696), Expect = 8.1e-70
Identity = 132/133 (99.25%), Postives = 133/133 (100.00%), Query Frame = 0


Query: 1   MALNLTNSFLQRPISPVVAPPKKKEFGARSHRAVVTCRKKDLHPQFHEDAKVYCNGELVM 60
           MALNLTNSFLQRPISPVVAPPKKKEFGARSHRAVVTCRKKDLHPQFHEDAKVYCNGELVM
Sbjct: 1   MALNLTNSFLQRPISPVVAPPKKKEFGARSHRAVVTCRKKDLHPQFHEDAKVYCNGELVM 60

Query: 61  TTGGTQKEYSVDVWSGNHPFYLGSRSALLVDADQVEKFRKKFGELSQLMEIPVLKGEIVL 120
           TTGGTQKEYSVDVWSGNHPFYLGSRSALLVDADQVEKFRKKFGELSQLMEIPVLKGEI+L
Sbjct: 61  TTGGTQKEYSVDVWSGNHPFYLGSRSALLVDADQVEKFRKKFGELSQLMEIPVLKGEIIL 120

Query: 121 PTKRKSGGKGKKK 134
           PTKRKSGGKGKKK
Sbjct: 121 PTKRKSGGKGKKK 133

[Close]

BLAST of CmoCh09G001400 vs. ExPASy TrEMBL
Match: A0A6J1FQS6 (50S ribosomal protein L31 OS=Cucurbita moschata OX=3662 GN=LOC111446395 PE=3 SV=1)

HSP 1 Score: 258.1 bits (658), Expect = 2.1e-65
Identity = 124/133 (93.23%), Postives = 128/133 (96.24%), Query Frame = 0


Query: 1   MALNLTNSFLQRPISPVVAPPKKKEFGARSHRAVVTCRKKDLHPQFHEDAKVYCNGELVM 60
           MALNLTNSFLQRP SP +APPK KE GAR +RAVVTCRKKD+HPQF+EDAKVYCNGELVM
Sbjct: 1   MALNLTNSFLQRPFSPAIAPPKNKELGARRYRAVVTCRKKDIHPQFYEDAKVYCNGELVM 60

Query: 61  TTGGTQKEYSVDVWSGNHPFYLGSRSALLVDADQVEKFRKKFGELSQLMEIPVLKGEIVL 120
           TTGGTQKEYSVDVWSGNHPFYLGSRSALLVDADQVEKFRKKFGELSQLMEIPVLKGEIVL
Sbjct: 61  TTGGTQKEYSVDVWSGNHPFYLGSRSALLVDADQVEKFRKKFGELSQLMEIPVLKGEIVL 120

Query: 121 PTKRKSGGKGKKK 134
           PTKRKSGGKGKKK
Sbjct: 121 PTKRKSGGKGKKK 133

[Close]

BLAST of CmoCh09G001400 vs. ExPASy TrEMBL
Match: A0A6J1J0F9 (50S ribosomal protein L31, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111480796 PE=4 SV=1)

HSP 1 Score: 252.7 bits (644), Expect = 8.7e-64
Identity = 122/133 (91.73%), Postives = 126/133 (94.74%), Query Frame = 0


Query: 1   MALNLTNSFLQRPISPVVAPPKKKEFGARSHRAVVTCRKKDLHPQFHEDAKVYCNGELVM 60
           MALNLTNSFLQR  SP +APPK KE GAR +R VVTCRKKD+HPQF+EDAKVYCNGELVM
Sbjct: 42  MALNLTNSFLQRSFSPAIAPPKNKELGARRYRPVVTCRKKDVHPQFYEDAKVYCNGELVM 101

Query: 61  TTGGTQKEYSVDVWSGNHPFYLGSRSALLVDADQVEKFRKKFGELSQLMEIPVLKGEIVL 120
           TTGGTQKEYSVDVWSGNHPFYLGSRSALLVDADQVEKFRKKFGELSQLMEIPVLKGEIVL
Sbjct: 102 TTGGTQKEYSVDVWSGNHPFYLGSRSALLVDADQVEKFRKKFGELSQLMEIPVLKGEIVL 161

Query: 121 PTKRKSGGKGKKK 134
           PTKRKSGGKGKKK
Sbjct: 162 PTKRKSGGKGKKK 174

[Close]

BLAST of CmoCh09G001400 vs. ExPASy TrEMBL
Match: A0A6J1C3Q3 (50S ribosomal protein L31, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111008063 PE=4 SV=1)

HSP 1 Score: 248.1 bits (632), Expect = 2.1e-62
Identity = 122/131 (93.13%), Postives = 125/131 (95.42%), Query Frame = 0


Query: 3   LNLTNSFLQRPISPVVAPPKKKEFGARSHRAVVTCRKKDLHPQFHEDAKVYCNGELVMTT 62
           LNLTNSFLQR I P VA P KKEFGARSHR VVTCRKKDLHPQF+EDAKVYCNGELVMTT
Sbjct: 34  LNLTNSFLQRRIPPAVA-PAKKEFGARSHRPVVTCRKKDLHPQFYEDAKVYCNGELVMTT 93

Query: 63  GGTQKEYSVDVWSGNHPFYLGSRSALLVDADQVEKFRKKFGELSQLMEIPVLKGEIVLPT 122
           GGTQKEYSVDVWSGNHPFYLGSRSALL+DADQVEKFRKKFGELSQLMEIPVLKGEI+LPT
Sbjct: 94  GGTQKEYSVDVWSGNHPFYLGSRSALLIDADQVEKFRKKFGELSQLMEIPVLKGEIILPT 153

Query: 123 KRKSGGKGKKK 134
           KRKSGGKGKKK
Sbjct: 154 KRKSGGKGKKK 163

[Close]

BLAST of CmoCh09G001400 vs. NCBI nr
Match: XP_022936208.1 (50S ribosomal protein L31, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 273.1 bits (697), Expect = 1.3e-69
Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 0


Query: 1   MALNLTNSFLQRPISPVVAPPKKKEFGARSHRAVVTCRKKDLHPQFHEDAKVYCNGELVM 60
           MALNLTNSFLQRPISPVVAPPKKKEFGARSHRAVVTCRKKDLHPQFHEDAKVYCNGELVM
Sbjct: 1   MALNLTNSFLQRPISPVVAPPKKKEFGARSHRAVVTCRKKDLHPQFHEDAKVYCNGELVM 60

Query: 61  TTGGTQKEYSVDVWSGNHPFYLGSRSALLVDADQVEKFRKKFGELSQLMEIPVLKGEIVL 120
           TTGGTQKEYSVDVWSGNHPFYLGSRSALLVDADQVEKFRKKFGELSQLMEIPVLKGEIVL
Sbjct: 61  TTGGTQKEYSVDVWSGNHPFYLGSRSALLVDADQVEKFRKKFGELSQLMEIPVLKGEIVL 120

Query: 121 PTKRKSGGKGKKK 134
           PTKRKSGGKGKKK
Sbjct: 121 PTKRKSGGKGKKK 133

[Close]

BLAST of CmoCh09G001400 vs. NCBI nr
Match: XP_022975559.1 (50S ribosomal protein L31, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 272.7 bits (696), Expect = 1.7e-69
Identity = 132/133 (99.25%), Postives = 133/133 (100.00%), Query Frame = 0


Query: 1   MALNLTNSFLQRPISPVVAPPKKKEFGARSHRAVVTCRKKDLHPQFHEDAKVYCNGELVM 60
           MALNLTNSFLQRPISPVVAPPKKKEFGARSHRAVVTCRKKDLHPQFHEDAKVYCNGELVM
Sbjct: 1   MALNLTNSFLQRPISPVVAPPKKKEFGARSHRAVVTCRKKDLHPQFHEDAKVYCNGELVM 60

Query: 61  TTGGTQKEYSVDVWSGNHPFYLGSRSALLVDADQVEKFRKKFGELSQLMEIPVLKGEIVL 120
           TTGGTQKEYSVDVWSGNHPFYLGSRSALLVDADQVEKFRKKFGELSQLMEIPVLKGEI+L
Sbjct: 61  TTGGTQKEYSVDVWSGNHPFYLGSRSALLVDADQVEKFRKKFGELSQLMEIPVLKGEIIL 120

Query: 121 PTKRKSGGKGKKK 134
           PTKRKSGGKGKKK
Sbjct: 121 PTKRKSGGKGKKK 133

[Close]

BLAST of CmoCh09G001400 vs. NCBI nr
Match: XP_023535198.1 (50S ribosomal protein L31, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 271.2 bits (692), Expect = 4.9e-69
Identity = 132/133 (99.25%), Postives = 133/133 (100.00%), Query Frame = 0


Query: 1   MALNLTNSFLQRPISPVVAPPKKKEFGARSHRAVVTCRKKDLHPQFHEDAKVYCNGELVM 60
           MAL+LTNSFLQRPISPVVAPPKKKEFGARSHRAVVTCRKKDLHPQFHEDAKVYCNGELVM
Sbjct: 1   MALSLTNSFLQRPISPVVAPPKKKEFGARSHRAVVTCRKKDLHPQFHEDAKVYCNGELVM 60

Query: 61  TTGGTQKEYSVDVWSGNHPFYLGSRSALLVDADQVEKFRKKFGELSQLMEIPVLKGEIVL 120
           TTGGTQKEYSVDVWSGNHPFYLGSRSALLVDADQVEKFRKKFGELSQLMEIPVLKGEIVL
Sbjct: 61  TTGGTQKEYSVDVWSGNHPFYLGSRSALLVDADQVEKFRKKFGELSQLMEIPVLKGEIVL 120

Query: 121 PTKRKSGGKGKKK 134
           PTKRKSGGKGKKK
Sbjct: 121 PTKRKSGGKGKKK 133

[Close]

BLAST of CmoCh09G001400 vs. NCBI nr
Match: KAG6591302.1 (50S ribosomal protein L31, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 270.0 bits (689), Expect = 1.1e-68
Identity = 132/133 (99.25%), Postives = 132/133 (99.25%), Query Frame = 0


Query: 1   MALNLTNSFLQRPISPVVAPPKKKEFGARSHRAVVTCRKKDLHPQFHEDAKVYCNGELVM 60
           MALNLTNSFLQRPISPVVAPPKKKEFGARS RAVVTCRKKDLHPQFHEDAKVYCNGELVM
Sbjct: 1   MALNLTNSFLQRPISPVVAPPKKKEFGARSRRAVVTCRKKDLHPQFHEDAKVYCNGELVM 60

Query: 61  TTGGTQKEYSVDVWSGNHPFYLGSRSALLVDADQVEKFRKKFGELSQLMEIPVLKGEIVL 120
           TTGGTQKEYSVDVWSGNHPFYLGSRSALLVDADQVEKFRKKFGELSQLMEIPVLKGEIVL
Sbjct: 61  TTGGTQKEYSVDVWSGNHPFYLGSRSALLVDADQVEKFRKKFGELSQLMEIPVLKGEIVL 120

Query: 121 PTKRKSGGKGKKK 134
           PTKRKSGGKGKKK
Sbjct: 121 PTKRKSGGKGKKK 133

[Close]

BLAST of CmoCh09G001400 vs. NCBI nr
Match: XP_022940973.1 (50S ribosomal protein L31, chloroplastic-like [Cucurbita moschata] >XP_022940974.1 50S ribosomal protein L31, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 258.1 bits (658), Expect = 4.3e-65
Identity = 124/133 (93.23%), Postives = 128/133 (96.24%), Query Frame = 0


Query: 1   MALNLTNSFLQRPISPVVAPPKKKEFGARSHRAVVTCRKKDLHPQFHEDAKVYCNGELVM 60
           MALNLTNSFLQRP SP +APPK KE GAR +RAVVTCRKKD+HPQF+EDAKVYCNGELVM
Sbjct: 1   MALNLTNSFLQRPFSPAIAPPKNKELGARRYRAVVTCRKKDIHPQFYEDAKVYCNGELVM 60

Query: 61  TTGGTQKEYSVDVWSGNHPFYLGSRSALLVDADQVEKFRKKFGELSQLMEIPVLKGEIVL 120
           TTGGTQKEYSVDVWSGNHPFYLGSRSALLVDADQVEKFRKKFGELSQLMEIPVLKGEIVL
Sbjct: 61  TTGGTQKEYSVDVWSGNHPFYLGSRSALLVDADQVEKFRKKFGELSQLMEIPVLKGEIVL 120

Query: 121 PTKRKSGGKGKKK 134
           PTKRKSGGKGKKK
Sbjct: 121 PTKRKSGGKGKKK 133

[Close]

BLAST of CmoCh09G001400 vs. TAIR 10
Match: AT1G75350.1 (Ribosomal protein L31 )

HSP 1 Score: 189.1 bits (479), Expect = 2.3e-48
Identity = 99/146 (67.81%), Postives = 113/146 (77.40%), Query Frame = 0


Query: 1   MALNLTNSFLQRPISPVV-----------APPKKKEFGARSHRAVV--TCRKKDLHPQFH 60
           MA++L NSFLQ  ISP V           A    K+   RS   VV  TCRKK+LHP+FH
Sbjct: 1   MAVSLPNSFLQ--ISPCVPSLQLRKPVMAAVKGGKQSVRRSSNTVVQITCRKKELHPEFH 60

Query: 61  EDAKVYCNGELVMTTGGTQKEYSVDVWSGNHPFYLGSRSALLVDADQVEKFRKKFGELSQ 120
           EDAKVYCNGELVMTTGGT+KEY VDVWSGNHPFYLG+RSAL+VDADQVEKFRK+F  LS+
Sbjct: 61  EDAKVYCNGELVMTTGGTKKEYVVDVWSGNHPFYLGNRSALMVDADQVEKFRKRFAGLSE 120

Query: 121 LMEIPVLKGEIVLPTKRKSGGKGKKK 134
           +MEIPVLKGEI++PTK+  G KGKKK
Sbjct: 121 IMEIPVLKGEIIMPTKKSKGPKGKKK 144

The following BLAST results are available for this feature:

BLAST of CmoCh09G001400 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FWS4	3.2e-47	67.81	50S ribosomal protein L31, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL3...	[more]
P82249	2.1e-43	66.42	50S ribosomal protein L31, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL31 P...	[more]
Q7V9Y9	1.7e-16	56.92	50S ribosomal protein L31 OS=Prochlorococcus marinus (strain SARG / CCMP1375 / S...	[more]
Q31L35	1.7e-16	57.35	50S ribosomal protein L31 OS=Synechococcus elongatus (strain PCC 7942 / FACHB-80...	[more]
Q5N0T7	1.7e-16	57.35	50S ribosomal protein L31 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / S...	[more]

BLAST of CmoCh09G001400 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FCM8	6.2e-70	100.00	50S ribosomal protein L31 OS=Cucurbita moschata OX=3662 GN=LOC111442881 PE=3 SV=...	[more]
A0A6J1IKY2	8.1e-70	99.25	50S ribosomal protein L31 OS=Cucurbita maxima OX=3661 GN=LOC111475090 PE=3 SV=1	[more]
A0A6J1FQS6	2.1e-65	93.23	50S ribosomal protein L31 OS=Cucurbita moschata OX=3662 GN=LOC111446395 PE=3 SV=...	[more]
A0A6J1J0F9	8.7e-64	91.73	50S ribosomal protein L31, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC11148...	[more]
A0A6J1C3Q3	2.1e-62	93.13	50S ribosomal protein L31, chloroplastic OS=Momordica charantia OX=3673 GN=LOC11...	[more]

BLAST of CmoCh09G001400 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022936208.1	1.3e-69	100.00	50S ribosomal protein L31, chloroplastic-like [Cucurbita moschata]	[more]
XP_022975559.1	1.7e-69	99.25	50S ribosomal protein L31, chloroplastic-like [Cucurbita maxima]	[more]
XP_023535198.1	4.9e-69	99.25	50S ribosomal protein L31, chloroplastic [Cucurbita pepo subsp. pepo]	[more]
KAG6591302.1	1.1e-68	99.25	50S ribosomal protein L31, chloroplastic, partial [Cucurbita argyrosperma subsp....	[more]
XP_022940973.1	4.3e-65	93.23	50S ribosomal protein L31, chloroplastic-like [Cucurbita moschata] >XP_022940974...	[more]

BLAST of CmoCh09G001400 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G75350.1	2.3e-48	67.81	Ribosomal protein L31	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002150	Ribosomal protein L31	PRINTS	PR01249	RIBOSOMALL31	coord: 39..56 score: 32.78 coord: 68..83 score: 49.69
IPR002150	Ribosomal protein L31	TIGRFAM	TIGR00105	TIGR00105	coord: 39..104 e-value: 8.0E-15 score: 52.7
IPR002150	Ribosomal protein L31	PFAM	PF01197	Ribosomal_L31	coord: 39..103 e-value: 4.5E-16 score: 58.8
IPR002150	Ribosomal protein L31	PANTHER	PTHR33280	50S RIBOSOMAL PROTEIN L31, CHLOROPLASTIC	coord: 4..133
IPR042105	Ribosomal protein L31 superfamily	GENE3D	4.10.830.30	Ribosomal protein L31	coord: 39..106 e-value: 1.3E-16 score: 62.5
None	No IPR available	PANTHER	PTHR33280:SF5	50S RIBOSOMAL PROTEIN L31	coord: 4..133
IPR034704	L28p-like	SUPERFAMILY	143800	L28p-like	coord: 39..105

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh09G001400.1	CmoCh09G001400.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome