CmoCh09G001140 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh09G001140
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Nucleic acid-binding, OB-fold containing protein
Location	Cmo_Chr09: 536769 .. 538483 (-)
RNA-Seq Expression	CmoCh09G001140
Synteny	CmoCh09G001140

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTCTTCTCCGGCGCTGCGGATTCTTCCTCTACTCCTTGTTGCGGTCGTCGTTTCAATGGAAGGGCTCAAGGTGTCGGATGCCGATTTGGTTATATATCTTCACCCAGCCAAAAGTAACAAGGTCTCGCAAGCGATTCTTCGCGAGCTCGGCGCTATGCTTCTAAAGTAACTTGAACTTCTTTTACGCTTTCAACAATTCTCGTCTCTAATTGCCTGCAATCACAATCTTTTCCAGTTACTGATACTGTTGCTTTGTTGATGTATTTATTTTTTTCTTTGAGCATCTTGATTGGGGATGCTATCTTTTAATGGCAGAATTTGACTAGTACAACCTTCAATTTCGCCGCAATTTAACTTTGTTTTTTCCTGCATTTTTATCAACTGGCGTTTTTTTCTTTGCTGGCTTGCTATTCTGTATTGAAGAAATAAACACCTGGTTGTGCTGTTGTTTGTGAACTCAGAATGTAAGTTTTTGTGACTTCCATGATTAGGGAATAGAGATGTTCTTCATTTAATTTGGACACAAAGGCGCAAAAGTTGAACTTCTAGTGATTCTCATTGCTGCTTCTTTTGCTTCATTCAATCAGCATTCAATTTCATTTATGTGGTACATACATGTGAACTTGTATTGAACTGACTTTGTTTAAATTGTACTTCGCGTGTAGATTTGATGAAAAATTTGAGGGCGTGCTACTGGCTTATGAGGCCAAAATTATTGATAAAAGTGCGAAGATTCTATCTGGAGTGCACCCCTACTTTGCCGTGACGATAAAGGCAAAGCTATTACTTTTCTCTCCAAAACCAAACATGCTTTTAGGTTGGTTTTCTATGATTCTCACAGTATTGCCATTAGGAAAACAACACATCTAGAATTTAAGTTGTCCATGCTTTTCTGATAGTTTGGTTATCACTTCAGAGGGAAAGGTGGTGAAGCTTAAGCAAGAATCAATCCATGTTATTGTCTTGGGTTTTGCTTCTGCTGTAATAACCGATGAAGACATTCGCAGCGAATTCAAGCATATAACAGTATGTTTCGTGCATTGTACTTGAGAATTCATACCTTTCCCTTCGCTGTACATATGAGAAGGAAGTTCTTGATATCTTGTTCTGACTGTATTATGCATTGATTTTGACATAGAGACATGGAGAAGAAATGCTTGTCAGTAGAGCTAACAAGCACCATGTAATAAAGGTTGGGACAATGATACGGTTTTTGGTGAAGAGGTTAGATTTTTTCCCTTTAATCACGTTTATTCTGTATCATTGAAGTGGAAAGTTATTCTTGGAGTTTTCATTCAATTAATTGGGGCCGGAACATCAACCTCATATTTATTGATGTTTGCTGATTCTTGTTGTTCTGCTTCAGTAATCTTAATATCTTGATGTTAAAAGAAGTGACTCAATTCATCCTTTACAGTTTTGATGAGGGAATACTGCACATCTCTGGATCTCTTGTTCCATCTCACACAGGGAGCATTCATCGGTTGGAGAAGAACTCAGTTGAAGGCTTAGCAACTAATAAGTGAGATAATACTACATTCTGTGAGGTTTTAAGCTATAATCCCCAAATCTATTATTTTAATTTTTTTTCGCCAAATTCTGTAGGAGCAAAAGGAAGATGAGAGAAGACGAGGCCACGGATATAAATGCACTTATCTTGAACGATGACCATCAGTCAAAAACGAAAAGGCAAAGAACTACCAGATTATCTTGA

mRNA sequence

TTTCTTCTCCGGCGCTGCGGATTCTTCCTCTACTCCTTGTTGCGGTCGTCGTTTCAATGGAAGGGCTCAAGGTGTCGGATGCCGATTTGGTTATATATCTTCACCCAGCCAAAAGTAACAAGGTCTCGCAAGCGATTCTTCGCGAGCTCGGCGCTATGCTTCTAAAATTTGATGAAAAATTTGAGGGCGTGCTACTGGCTTATGAGGCCAAAATTATTGATAAAAGTGCGAAGATTCTATCTGGAGTGCACCCCTACTTTGCCGTGACGATAAAGGCAAAGCTATTACTTTTCTCTCCAAAACCAAACATGCTTTTAGAGGGAAAGGTGGTGAAGCTTAAGCAAGAATCAATCCATGTTATTGTCTTGGGTTTTGCTTCTGCTGTAATAACCGATGAAGACATTCGCAGCGAATTCAAGCATATAACAAGACATGGAGAAGAAATGCTTGTCAGTAGAGCTAACAAGCACCATGTAATAAAGGTTGGGACAATGATACGGTTTTTGGTGAAGAGATTTTTTCCCTTTAATCACGTTTATTCTGTATCATTGAAGTGGAAAGTTATTCTTGGAGTTTTCATTCAATTAATTGGGGCCGGAACATCAACCTCATATTTATTGATTAATCTTAATATCTTGATGTTAAAAGAAGTGACTCAATTCATCCTTTACAGTTTTGATGAGGGAATACTGCACATCTCTGGATCTCTTGTTCCATCTCACACAGGGAGCATTCATCGGTTGGAGAAGAACTCAGTTGAAGGCTTAGCAACTAATAAGAGCAAAAGGAAGATGAGAGAAGACGAGGCCACGGATATAAATGCACTTATCTTGAACGATGACCATCAGTCAAAAACGAAAAGGCAAAGAACTACCAGATTATCTTGA

Coding sequence (CDS)

ATGGAAGGGCTCAAGGTGTCGGATGCCGATTTGGTTATATATCTTCACCCAGCCAAAAGTAACAAGGTCTCGCAAGCGATTCTTCGCGAGCTCGGCGCTATGCTTCTAAAATTTGATGAAAAATTTGAGGGCGTGCTACTGGCTTATGAGGCCAAAATTATTGATAAAAGTGCGAAGATTCTATCTGGAGTGCACCCCTACTTTGCCGTGACGATAAAGGCAAAGCTATTACTTTTCTCTCCAAAACCAAACATGCTTTTAGAGGGAAAGGTGGTGAAGCTTAAGCAAGAATCAATCCATGTTATTGTCTTGGGTTTTGCTTCTGCTGTAATAACCGATGAAGACATTCGCAGCGAATTCAAGCATATAACAAGACATGGAGAAGAAATGCTTGTCAGTAGAGCTAACAAGCACCATGTAATAAAGGTTGGGACAATGATACGGTTTTTGGTGAAGAGATTTTTTCCCTTTAATCACGTTTATTCTGTATCATTGAAGTGGAAAGTTATTCTTGGAGTTTTCATTCAATTAATTGGGGCCGGAACATCAACCTCATATTTATTGATTAATCTTAATATCTTGATGTTAAAAGAAGTGACTCAATTCATCCTTTACAGTTTTGATGAGGGAATACTGCACATCTCTGGATCTCTTGTTCCATCTCACACAGGGAGCATTCATCGGTTGGAGAAGAACTCAGTTGAAGGCTTAGCAACTAATAAGAGCAAAAGGAAGATGAGAGAAGACGAGGCCACGGATATAAATGCACTTATCTTGAACGATGACCATCAGTCAAAAACGAAAAGGCAAAGAACTACCAGATTATCTTGA

Protein sequence

MEGLKVSDADLVIYLHPAKSNKVSQAILRELGAMLLKFDEKFEGVLLAYEAKIIDKSAKILSGVHPYFAVTIKAKLLLFSPKPNMLLEGKVVKLKQESIHVIVLGFASAVITDEDIRSEFKHITRHGEEMLVSRANKHHVIKVGTMIRFLVKRFFPFNHVYSVSLKWKVILGVFIQLIGAGTSTSYLLINLNILMLKEVTQFILYSFDEGILHISGSLVPSHTGSIHRLEKNSVEGLATNKSKRKMREDEATDINALILNDDHQSKTKRQRTTRLS

Homology

[Close]

BLAST of CmoCh09G001140 vs. ExPASy Swiss-Prot
Match: O43036 (DNA-directed RNA polymerase I subunit rpa43 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rpa43 PE=1 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.5e-06
Identity = 39/144 (27.08%), Postives = 75/144 (52.08%), Query Frame = 0


Query: 10  DLVIYLHPAKSNKVSQAILRELGAMLLKFDEKFEGVLLAYE-AKIIDKSAKILSGVHPYF 69
           DL + + P  S     AI   + +M+L    +  G++LAY+  + ++KSAK++    P+ 
Sbjct: 12  DLYLSIAPGHSRDPLNAIQEHMDSMILSKLPRINGIVLAYDNIRFLEKSAKVMYD-SPFS 71

Query: 70  AVTIKAKLLLFSPKPNMLLEGKVVKLKQESIHVIVLGFASAVITDEDIRSEFKHITRH-G 129
            + ++  +L+FSPK    LEGK+  +    I +++LG  +A I  + I  ++  I     
Sbjct: 72  FIWVRVDVLVFSPKKGDCLEGKINLVSPSHIGLLILGIFNASIPRKSIPKDWIFIEPDTT 131

Query: 130 EEMLVSRANKHHVIKVGTMIRFLV 152
           EE    + N  ++++ G  + F+V
Sbjct: 132 EEQGRWKTNDGNILEPGKDLEFVV 154

[Close]

BLAST of CmoCh09G001140 vs. ExPASy TrEMBL
Match: A0A6J1F9B5 (uncharacterized protein LOC111443277 OS=Cucurbita moschata OX=3662 GN=LOC111443277 PE=4 SV=1)

HSP 1 Score: 399.4 bits (1025), Expect = 1.2e-107
Identity = 223/276 (80.80%), Postives = 223/276 (80.80%), Query Frame = 0


Query: 1   MEGLKVSDADLVIYLHPAKSNKVSQAILRELGAMLLKFDEKFEGVLLAYEAKIIDKSAKI 60
           MEGLKVSDADLVIYLHPAKSNKVSQAILRELGAMLLKFDEKFEGVLLAYEAKIIDKSAKI
Sbjct: 1   MEGLKVSDADLVIYLHPAKSNKVSQAILRELGAMLLKFDEKFEGVLLAYEAKIIDKSAKI 60

Query: 61  LSGVHPYFAVTIKAKLLLFSPKPNMLLEGKVVKLKQESIHVIVLGFASAVITDEDIRSEF 120
           LSGVHPYFAVTIKAKLLLFSPKPNMLLEGKVVKLKQESIHVIVLGFASAVITDEDIRSEF
Sbjct: 61  LSGVHPYFAVTIKAKLLLFSPKPNMLLEGKVVKLKQESIHVIVLGFASAVITDEDIRSEF 120

Query: 121 KHITRHGEEMLVSRANKHHVIKVGTMIRFLVKRFFPFNHVYSVSLKWKVILGVFIQLIGA 180
           KHITRHGEEMLVSRANKHHVIKVGTMIRFLVK                            
Sbjct: 121 KHITRHGEEMLVSRANKHHVIKVGTMIRFLVK---------------------------- 180

Query: 181 GTSTSYLLINLNILMLKEVTQFILYSFDEGILHISGSLVPSHTGSIHRLEKNSVEGLATN 240
                                    SFDEGILHISGSLVPSHTGSIHRLEKNSVEGLATN
Sbjct: 181 -------------------------SFDEGILHISGSLVPSHTGSIHRLEKNSVEGLATN 223

Query: 241 KSKRKMREDEATDINALILNDDHQSKTKRQRTTRLS 277
           KSKRKMREDEATDINALILNDDHQSKTKRQRTTRLS
Sbjct: 241 KSKRKMREDEATDINALILNDDHQSKTKRQRTTRLS 223

[Close]

BLAST of CmoCh09G001140 vs. ExPASy TrEMBL
Match: A0A6J1ICE8 (uncharacterized protein LOC111473544 OS=Cucurbita maxima OX=3661 GN=LOC111473544 PE=4 SV=1)

HSP 1 Score: 389.0 bits (998), Expect = 1.6e-104
Identity = 217/276 (78.62%), Postives = 220/276 (79.71%), Query Frame = 0


Query: 1   MEGLKVSDADLVIYLHPAKSNKVSQAILRELGAMLLKFDEKFEGVLLAYEAKIIDKSAKI 60
           MEGLKVSDADLVIYLHPAKSNKVSQAIL ELGAMLLKFDEKFEGVLLAYEAKIIDKSAKI
Sbjct: 1   MEGLKVSDADLVIYLHPAKSNKVSQAILHELGAMLLKFDEKFEGVLLAYEAKIIDKSAKI 60

Query: 61  LSGVHPYFAVTIKAKLLLFSPKPNMLLEGKVVKLKQESIHVIVLGFASAVITDEDIRSEF 120
           LSGVHPYFAVTIKAKLLLFSPKPNMLLEGKVVKLKQESIHVIVLGFASAVITDEDI SEF
Sbjct: 61  LSGVHPYFAVTIKAKLLLFSPKPNMLLEGKVVKLKQESIHVIVLGFASAVITDEDISSEF 120

Query: 121 KHITRHGEEMLVSRANKHHVIKVGTMIRFLVKRFFPFNHVYSVSLKWKVILGVFIQLIGA 180
           KHITRHGEEMLVSRANKHHVIKVGT+IRFLVK                            
Sbjct: 121 KHITRHGEEMLVSRANKHHVIKVGTIIRFLVK---------------------------- 180

Query: 181 GTSTSYLLINLNILMLKEVTQFILYSFDEGILHISGSLVPSHTGSIHRLEKNSVEGLATN 240
                                    SFDEGILHISGSLVPSHTGSIHRLEKNSVEGLATN
Sbjct: 181 -------------------------SFDEGILHISGSLVPSHTGSIHRLEKNSVEGLATN 223

Query: 241 KSKRKMREDEATDINALILNDDHQSKTKRQRTTRLS 277
           KSKRKMREDEATDINALILNDDHQSKTK+Q+ TRLS
Sbjct: 241 KSKRKMREDEATDINALILNDDHQSKTKKQKITRLS 223

[Close]

BLAST of CmoCh09G001140 vs. ExPASy TrEMBL
Match: A0A6J1FN75 (uncharacterized protein LOC111445794 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111445794 PE=4 SV=1)

HSP 1 Score: 342.4 bits (877), Expect = 1.7e-90
Identity = 190/285 (66.67%), Postives = 213/285 (74.74%), Query Frame = 0


Query: 1   MEGLKVSDADLVIYLHPAKSNKVSQAILRELGAMLLKFDEKFEGVLLAYEAKIIDKSAKI 60
           MEGLKVSDA+LVIY+HP+KS KVSQA+LRELGAMLLKFDE+FEGVLLAYEA IIDKSAKI
Sbjct: 1   MEGLKVSDANLVIYVHPSKSKKVSQAVLRELGAMLLKFDERFEGVLLAYEANIIDKSAKI 60

Query: 61  LSGVHPYFAVTIKAKLLLFSPKPNMLLEGKVVKLKQESIHVIVLGFASAVITDEDIRSEF 120
           LSGVHPYF VTIKAKLLLFSPKPNMLLEGKVVKL+QESIHVIVLGFASAVITDEDIR+EF
Sbjct: 61  LSGVHPYFGVTIKAKLLLFSPKPNMLLEGKVVKLRQESIHVIVLGFASAVITDEDIRNEF 120

Query: 121 KHITRHGEEMLVSRANKHHVIKVGTMIRFLVKRFFPFNHVYSVSLKWKVILGVFIQLIGA 180
           KH T+HGEEM VSRANKHHVIKVGTM+RFLVK                            
Sbjct: 121 KHRTKHGEEMFVSRANKHHVIKVGTMVRFLVK---------------------------- 180

Query: 181 GTSTSYLLINLNILMLKEVTQFILYSFDEGILHISGSLVPSHTGSIHRLEKNSVEGLATN 240
                                    SFDE ILHISGSLVPSHTGSIH LEKNSVEG  T+
Sbjct: 181 -------------------------SFDEEILHISGSLVPSHTGSIHCLEKNSVEGSVTS 232

Query: 241 KSKRKMREDE---------ATDINALILNDDHQSKTKRQRTTRLS 277
           +S++K R+++         ATD+NAL+LN+DHQSKTK+Q+T+R+S
Sbjct: 241 RSRKKTRDNDRESLLQDSVATDVNALLLNNDHQSKTKKQKTSRIS 232

[Close]

BLAST of CmoCh09G001140 vs. ExPASy TrEMBL
Match: A0A6J1FPG3 (uncharacterized protein LOC111445794 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111445794 PE=4 SV=1)

HSP 1 Score: 337.8 bits (865), Expect = 4.2e-89
Identity = 190/285 (66.67%), Postives = 212/285 (74.39%), Query Frame = 0


Query: 1   MEGLKVSDADLVIYLHPAKSNKVSQAILRELGAMLLKFDEKFEGVLLAYEAKIIDKSAKI 60
           MEGLKVSDA+LVIY+HP+KS KVSQA+LRELGAMLLKFDE+FEGVLLAYEA IIDKSAKI
Sbjct: 1   MEGLKVSDANLVIYVHPSKSKKVSQAVLRELGAMLLKFDERFEGVLLAYEANIIDKSAKI 60

Query: 61  LSGVHPYFAVTIKAKLLLFSPKPNMLLEGKVVKLKQESIHVIVLGFASAVITDEDIRSEF 120
           LSGVHPYF VTIKAKLLLFSPKPNMLLEGKVVKL+QESIHVIVLGFASAVITDEDIR+EF
Sbjct: 61  LSGVHPYFGVTIKAKLLLFSPKPNMLLEGKVVKLRQESIHVIVLGFASAVITDEDIRNEF 120

Query: 121 KHITRHGEEMLVSRANKHHVIKVGTMIRFLVKRFFPFNHVYSVSLKWKVILGVFIQLIGA 180
           KH T+HGEEM VSRANKHHVIKVGTM+RFLVK                            
Sbjct: 121 KHRTKHGEEMFVSRANKHHVIKVGTMVRFLVK---------------------------- 180

Query: 181 GTSTSYLLINLNILMLKEVTQFILYSFDEGILHISGSLVPSHTGSIHRLEKNSVEGLATN 240
                                    SFDE ILHISGSLVPSHTGSIH LEKNSVEG  T 
Sbjct: 181 -------------------------SFDEEILHISGSLVPSHTGSIHCLEKNSVEGSVT- 231

Query: 241 KSKRKMREDE---------ATDINALILNDDHQSKTKRQRTTRLS 277
           +S++K R+++         ATD+NAL+LN+DHQSKTK+Q+T+R+S
Sbjct: 241 RSRKKTRDNDRESLLQDSVATDVNALLLNNDHQSKTKKQKTSRIS 231

[Close]

BLAST of CmoCh09G001140 vs. ExPASy TrEMBL
Match: A0A6J1IWP0 (uncharacterized protein LOC111481277 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111481277 PE=4 SV=1)

HSP 1 Score: 337.4 bits (864), Expect = 5.5e-89
Identity = 187/280 (66.79%), Postives = 209/280 (74.64%), Query Frame = 0


Query: 1   MEGLKVSDADLVIYLHPAKSNKVSQAILRELGAMLLKFDEKFEGVLLAYEAKIIDKSAKI 60
           MEGLKVSDA+LVIY+HP+KS KVSQA+LR+LGAMLLKFDE+FEGVLLAYEA IIDKSAKI
Sbjct: 1   MEGLKVSDANLVIYVHPSKSKKVSQAVLRDLGAMLLKFDERFEGVLLAYEANIIDKSAKI 60

Query: 61  LSGVHPYFAVTIKAKLLLFSPKPNMLLEGKVVKLKQESIHVIVLGFASAVITDEDIRSEF 120
           LSGVHPYF VTIKAKLLLFSPKPNMLLEGKVVKL+QESIHVIVLGFASAVITDEDIR+EF
Sbjct: 61  LSGVHPYFGVTIKAKLLLFSPKPNMLLEGKVVKLRQESIHVIVLGFASAVITDEDIRNEF 120

Query: 121 KHITRHGEEMLVSRANKHHVIKVGTMIRFLVKRFFPFNHVYSVSLKWKVILGVFIQLIGA 180
           KH T+HGEEM VSRA+KHHVIKVGTM+RFLVK                            
Sbjct: 121 KHRTKHGEEMFVSRAHKHHVIKVGTMVRFLVK---------------------------- 180

Query: 181 GTSTSYLLINLNILMLKEVTQFILYSFDEGILHISGSLVPSHTGSIHRLEKNSVEGLATN 240
                                    SFDE ILHISGSLVPSHTGSIH LEKNSVEG  TN
Sbjct: 181 -------------------------SFDEEILHISGSLVPSHTGSIHCLEKNSVEGSVTN 227

Query: 241 KSKRKMREDE---------ATDINALILNDDHQSKTKRQR 272
           +S++KMR+++         ATD+NAL+LN+DHQSKTK+Q+
Sbjct: 241 RSRKKMRDNDRESLLQDSVATDVNALLLNNDHQSKTKKQK 227

[Close]

BLAST of CmoCh09G001140 vs. NCBI nr
Match: XP_022936799.1 (uncharacterized protein LOC111443277 [Cucurbita moschata] >XP_022936800.1 uncharacterized protein LOC111443277 [Cucurbita moschata])

HSP 1 Score: 399.4 bits (1025), Expect = 2.5e-107
Identity = 223/276 (80.80%), Postives = 223/276 (80.80%), Query Frame = 0


Query: 1   MEGLKVSDADLVIYLHPAKSNKVSQAILRELGAMLLKFDEKFEGVLLAYEAKIIDKSAKI 60
           MEGLKVSDADLVIYLHPAKSNKVSQAILRELGAMLLKFDEKFEGVLLAYEAKIIDKSAKI
Sbjct: 1   MEGLKVSDADLVIYLHPAKSNKVSQAILRELGAMLLKFDEKFEGVLLAYEAKIIDKSAKI 60

Query: 61  LSGVHPYFAVTIKAKLLLFSPKPNMLLEGKVVKLKQESIHVIVLGFASAVITDEDIRSEF 120
           LSGVHPYFAVTIKAKLLLFSPKPNMLLEGKVVKLKQESIHVIVLGFASAVITDEDIRSEF
Sbjct: 61  LSGVHPYFAVTIKAKLLLFSPKPNMLLEGKVVKLKQESIHVIVLGFASAVITDEDIRSEF 120

Query: 121 KHITRHGEEMLVSRANKHHVIKVGTMIRFLVKRFFPFNHVYSVSLKWKVILGVFIQLIGA 180
           KHITRHGEEMLVSRANKHHVIKVGTMIRFLVK                            
Sbjct: 121 KHITRHGEEMLVSRANKHHVIKVGTMIRFLVK---------------------------- 180

Query: 181 GTSTSYLLINLNILMLKEVTQFILYSFDEGILHISGSLVPSHTGSIHRLEKNSVEGLATN 240
                                    SFDEGILHISGSLVPSHTGSIHRLEKNSVEGLATN
Sbjct: 181 -------------------------SFDEGILHISGSLVPSHTGSIHRLEKNSVEGLATN 223

Query: 241 KSKRKMREDEATDINALILNDDHQSKTKRQRTTRLS 277
           KSKRKMREDEATDINALILNDDHQSKTKRQRTTRLS
Sbjct: 241 KSKRKMREDEATDINALILNDDHQSKTKRQRTTRLS 223

[Close]

BLAST of CmoCh09G001140 vs. NCBI nr
Match: KAG7024164.1 (rpa43, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 398.3 bits (1022), Expect = 5.5e-107
Identity = 222/276 (80.43%), Postives = 223/276 (80.80%), Query Frame = 0


Query: 1   MEGLKVSDADLVIYLHPAKSNKVSQAILRELGAMLLKFDEKFEGVLLAYEAKIIDKSAKI 60
           MEGLKVSDADLVIYLHPAKSNKVSQAILRELGAMLLKFDEKFEGVLLAYEAKIIDKSAKI
Sbjct: 1   MEGLKVSDADLVIYLHPAKSNKVSQAILRELGAMLLKFDEKFEGVLLAYEAKIIDKSAKI 60

Query: 61  LSGVHPYFAVTIKAKLLLFSPKPNMLLEGKVVKLKQESIHVIVLGFASAVITDEDIRSEF 120
           LSGVHPYFAVTIKAKLLLFSPKPNMLLEGKVVKLKQESIHVIVLGFASAVITDEDIRSEF
Sbjct: 61  LSGVHPYFAVTIKAKLLLFSPKPNMLLEGKVVKLKQESIHVIVLGFASAVITDEDIRSEF 120

Query: 121 KHITRHGEEMLVSRANKHHVIKVGTMIRFLVKRFFPFNHVYSVSLKWKVILGVFIQLIGA 180
           KHITRHGEEMLVSRANKHHVIKVGTMIRFLVK                            
Sbjct: 121 KHITRHGEEMLVSRANKHHVIKVGTMIRFLVK---------------------------- 180

Query: 181 GTSTSYLLINLNILMLKEVTQFILYSFDEGILHISGSLVPSHTGSIHRLEKNSVEGLATN 240
                                    SFDEGILHISGSLVPSHTGSIHRLEKNSVEGLATN
Sbjct: 181 -------------------------SFDEGILHISGSLVPSHTGSIHRLEKNSVEGLATN 223

Query: 241 KSKRKMREDEATDINALILNDDHQSKTKRQRTTRLS 277
           KSKRKMREDEATDINALILNDDHQSKTKRQ+TTRLS
Sbjct: 241 KSKRKMREDEATDINALILNDDHQSKTKRQKTTRLS 223

[Close]

BLAST of CmoCh09G001140 vs. NCBI nr
Match: XP_023535184.1 (uncharacterized protein LOC111796686 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 395.2 bits (1014), Expect = 4.6e-106
Identity = 220/276 (79.71%), Postives = 222/276 (80.43%), Query Frame = 0


Query: 1   MEGLKVSDADLVIYLHPAKSNKVSQAILRELGAMLLKFDEKFEGVLLAYEAKIIDKSAKI 60
           MEGLKVSDADLVIYLHPAKSNKVSQAILRELGAMLLKFDEKFEGVLLAYEAKIIDKSAKI
Sbjct: 1   MEGLKVSDADLVIYLHPAKSNKVSQAILRELGAMLLKFDEKFEGVLLAYEAKIIDKSAKI 60

Query: 61  LSGVHPYFAVTIKAKLLLFSPKPNMLLEGKVVKLKQESIHVIVLGFASAVITDEDIRSEF 120
           LSGVHPYFAVTIKAKLLLFSPKPNMLLEGKVVKLKQESIHVIVLGFASAVITDEDIRSEF
Sbjct: 61  LSGVHPYFAVTIKAKLLLFSPKPNMLLEGKVVKLKQESIHVIVLGFASAVITDEDIRSEF 120

Query: 121 KHITRHGEEMLVSRANKHHVIKVGTMIRFLVKRFFPFNHVYSVSLKWKVILGVFIQLIGA 180
           KHITRHGEEMLVSRANKHHVIKVGTMIRFLVK                            
Sbjct: 121 KHITRHGEEMLVSRANKHHVIKVGTMIRFLVK---------------------------- 180

Query: 181 GTSTSYLLINLNILMLKEVTQFILYSFDEGILHISGSLVPSHTGSIHRLEKNSVEGLATN 240
                                    SFDEGILHISGSLVPSHTGSIHRLEKNSVEGLATN
Sbjct: 181 -------------------------SFDEGILHISGSLVPSHTGSIHRLEKNSVEGLATN 223

Query: 241 KSKRKMREDEATDINALILNDDHQSKTKRQRTTRLS 277
           KSKRKMREDEATDINALILNDDHQSKTK+Q+T RLS
Sbjct: 241 KSKRKMREDEATDINALILNDDHQSKTKKQKTARLS 223

[Close]

BLAST of CmoCh09G001140 vs. NCBI nr
Match: XP_022974791.1 (uncharacterized protein LOC111473544 [Cucurbita maxima] >XP_022974796.1 uncharacterized protein LOC111473544 [Cucurbita maxima])

HSP 1 Score: 389.0 bits (998), Expect = 3.3e-104
Identity = 217/276 (78.62%), Postives = 220/276 (79.71%), Query Frame = 0


Query: 1   MEGLKVSDADLVIYLHPAKSNKVSQAILRELGAMLLKFDEKFEGVLLAYEAKIIDKSAKI 60
           MEGLKVSDADLVIYLHPAKSNKVSQAIL ELGAMLLKFDEKFEGVLLAYEAKIIDKSAKI
Sbjct: 1   MEGLKVSDADLVIYLHPAKSNKVSQAILHELGAMLLKFDEKFEGVLLAYEAKIIDKSAKI 60

Query: 61  LSGVHPYFAVTIKAKLLLFSPKPNMLLEGKVVKLKQESIHVIVLGFASAVITDEDIRSEF 120
           LSGVHPYFAVTIKAKLLLFSPKPNMLLEGKVVKLKQESIHVIVLGFASAVITDEDI SEF
Sbjct: 61  LSGVHPYFAVTIKAKLLLFSPKPNMLLEGKVVKLKQESIHVIVLGFASAVITDEDISSEF 120

Query: 121 KHITRHGEEMLVSRANKHHVIKVGTMIRFLVKRFFPFNHVYSVSLKWKVILGVFIQLIGA 180
           KHITRHGEEMLVSRANKHHVIKVGT+IRFLVK                            
Sbjct: 121 KHITRHGEEMLVSRANKHHVIKVGTIIRFLVK---------------------------- 180

Query: 181 GTSTSYLLINLNILMLKEVTQFILYSFDEGILHISGSLVPSHTGSIHRLEKNSVEGLATN 240
                                    SFDEGILHISGSLVPSHTGSIHRLEKNSVEGLATN
Sbjct: 181 -------------------------SFDEGILHISGSLVPSHTGSIHRLEKNSVEGLATN 223

Query: 241 KSKRKMREDEATDINALILNDDHQSKTKRQRTTRLS 277
           KSKRKMREDEATDINALILNDDHQSKTK+Q+ TRLS
Sbjct: 241 KSKRKMREDEATDINALILNDDHQSKTKKQKITRLS 223

[Close]

BLAST of CmoCh09G001140 vs. NCBI nr
Match: KAG6591280.1 (hypothetical protein SDJN03_13626, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 382.1 bits (980), Expect = 4.1e-102
Identity = 213/267 (79.78%), Postives = 213/267 (79.78%), Query Frame = 0


Query: 1   MEGLKVSDADLVIYLHPAKSNKVSQAILRELGAMLLKFDEKFEGVLLAYEAKIIDKSAKI 60
           MEGLKVSDADLVIYLHPAKSNKVSQAILRELGAMLLKFDEKFEGVLLAYEAKIIDKSAKI
Sbjct: 1   MEGLKVSDADLVIYLHPAKSNKVSQAILRELGAMLLKFDEKFEGVLLAYEAKIIDKSAKI 60

Query: 61  LSGVHPYFAVTIKAKLLLFSPKPNMLLEGKVVKLKQESIHVIVLGFASAVITDEDIRSEF 120
           LSGVHPYFAVTIKAKLLLFSPKPNMLLEGKVVKLKQESIHVIVLGFASAVITDEDIRSEF
Sbjct: 61  LSGVHPYFAVTIKAKLLLFSPKPNMLLEGKVVKLKQESIHVIVLGFASAVITDEDIRSEF 120

Query: 121 KHITRHGEEMLVSRANKHHVIKVGTMIRFLVKRFFPFNHVYSVSLKWKVILGVFIQLIGA 180
           KHITRHGEEMLVSRANKHHVIKVGTMIRFLVK                            
Sbjct: 121 KHITRHGEEMLVSRANKHHVIKVGTMIRFLVK---------------------------- 180

Query: 181 GTSTSYLLINLNILMLKEVTQFILYSFDEGILHISGSLVPSHTGSIHRLEKNSVEGLATN 240
                                    SFDEGILHISGSLVPSHTGSIHRLEKNSVEGLATN
Sbjct: 181 -------------------------SFDEGILHISGSLVPSHTGSIHRLEKNSVEGLATN 214

Query: 241 KSKRKMREDEATDINALILNDDHQSKT 268
           KSKRKMREDEATDINALILNDDHQS T
Sbjct: 241 KSKRKMREDEATDINALILNDDHQSST 214

[Close]

BLAST of CmoCh09G001140 vs. TAIR 10
Match: AT1G75670.1 (DNA-directed RNA polymerases )

HSP 1 Score: 194.9 bits (494), Expect = 8.6e-50
Identity = 105/247 (42.51%), Postives = 148/247 (59.92%), Query Frame = 0


Query: 1   MEGLKVSDADLVIYLHPAKSNKVSQAILRELGAMLLKFDEKFEGVLLAYEAKIIDKSAKI 60
           MEGLK+S+A+L+I++HP++S  V Q I REL ++L +++E F+GVLLAY+A +  K AKI
Sbjct: 1   MEGLKLSEAELMIFIHPSQSRNVFQGICRELSSLLFQYNETFDGVLLAYDATVKSKQAKI 60

Query: 61  LSGVHPYFAVTIKAKLLLFSPKPNMLLEGKVVKLKQESIHVIVLGFASAVITDEDIRSEF 120
           L+G+HPYF V +  +LLLF PKP   +EGK+VK+  ESIHVIVLGF++AVITD DIR EF
Sbjct: 61  LTGLHPYFGVRVNTRLLLFDPKPKSFVEGKIVKISPESIHVIVLGFSAAVITDVDIREEF 120

Query: 121 KHITRHGEEMLVSRANKHHVIKVGTMIRFLVKRFFPFNHVYSVSLKWKVILGVFIQLIGA 180
           K+  R GE   VSR++K H +K+GTM+R  V+                            
Sbjct: 121 KYRVRDGEGSFVSRSHKRHALKLGTMLRLQVQ---------------------------- 180

Query: 181 GTSTSYLLINLNILMLKEVTQFILYSFDEGILHISGSLVPSHTGSIHRLEKNSVEGLATN 240
                                    SFDE ++HI+GSL+P +TG +  LEK S E L T+
Sbjct: 181 -------------------------SFDEEVMHIAGSLLPENTGCVKWLEKKSEEALPTD 194

Query: 241 KSKRKMR 248
           +  ++ +
Sbjct: 241 RDHKRRK 194

[Close]

BLAST of CmoCh09G001140 vs. TAIR 10
Match: AT1G75670.2 (DNA-directed RNA polymerases )

HSP 1 Score: 194.9 bits (494), Expect = 8.6e-50
Identity = 105/247 (42.51%), Postives = 148/247 (59.92%), Query Frame = 0


Query: 1   MEGLKVSDADLVIYLHPAKSNKVSQAILRELGAMLLKFDEKFEGVLLAYEAKIIDKSAKI 60
           MEGLK+S+A+L+I++HP++S  V Q I REL ++L +++E F+GVLLAY+A +  K AKI
Sbjct: 1   MEGLKLSEAELMIFIHPSQSRNVFQGICRELSSLLFQYNETFDGVLLAYDATVKSKQAKI 60

Query: 61  LSGVHPYFAVTIKAKLLLFSPKPNMLLEGKVVKLKQESIHVIVLGFASAVITDEDIRSEF 120
           L+G+HPYF V +  +LLLF PKP   +EGK+VK+  ESIHVIVLGF++AVITD DIR EF
Sbjct: 61  LTGLHPYFGVRVNTRLLLFDPKPKSFVEGKIVKISPESIHVIVLGFSAAVITDVDIREEF 120

Query: 121 KHITRHGEEMLVSRANKHHVIKVGTMIRFLVKRFFPFNHVYSVSLKWKVILGVFIQLIGA 180
           K+  R GE   VSR++K H +K+GTM+R  V+                            
Sbjct: 121 KYRVRDGEGSFVSRSHKRHALKLGTMLRLQVQ---------------------------- 180

Query: 181 GTSTSYLLINLNILMLKEVTQFILYSFDEGILHISGSLVPSHTGSIHRLEKNSVEGLATN 240
                                    SFDE ++HI+GSL+P +TG +  LEK S E L T+
Sbjct: 181 -------------------------SFDEEVMHIAGSLLPENTGCVKWLEKKSEEALPTD 194

Query: 241 KSKRKMR 248
           +  ++ +
Sbjct: 241 RDHKRRK 194

The following BLAST results are available for this feature:

BLAST of CmoCh09G001140 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O43036	1.5e-06	27.08	DNA-directed RNA polymerase I subunit rpa43 OS=Schizosaccharomyces pombe (strain...	[more]

BLAST of CmoCh09G001140 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1F9B5	1.2e-107	80.80	uncharacterized protein LOC111443277 OS=Cucurbita moschata OX=3662 GN=LOC1114432...	[more]
A0A6J1ICE8	1.6e-104	78.62	uncharacterized protein LOC111473544 OS=Cucurbita maxima OX=3661 GN=LOC111473544...	[more]
A0A6J1FN75	1.7e-90	66.67	uncharacterized protein LOC111445794 isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1FPG3	4.2e-89	66.67	uncharacterized protein LOC111445794 isoform X2 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1IWP0	5.5e-89	66.79	uncharacterized protein LOC111481277 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]

BLAST of CmoCh09G001140 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022936799.1	2.5e-107	80.80	uncharacterized protein LOC111443277 [Cucurbita moschata] >XP_022936800.1 unchar...	[more]
KAG7024164.1	5.5e-107	80.43	rpa43, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_023535184.1	4.6e-106	79.71	uncharacterized protein LOC111796686 [Cucurbita pepo subsp. pepo]	[more]
XP_022974791.1	3.3e-104	78.62	uncharacterized protein LOC111473544 [Cucurbita maxima] >XP_022974796.1 uncharac...	[more]
KAG6591280.1	4.1e-102	79.78	hypothetical protein SDJN03_13626, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of CmoCh09G001140 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G75670.1	8.6e-50	42.51	DNA-directed RNA polymerases	[more]
AT1G75670.2	8.6e-50	42.51	DNA-directed RNA polymerases	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036898	RNA polymerase Rpb7-like, N-terminal domain superfamily	GENE3D	3.30.1490.120		coord: 2..83 e-value: 1.3E-7 score: 33.4
IPR045113	RNA polymerase Rpb7-like	PANTHER	PTHR12709	DNA-DIRECTED RNA POLYMERASE II, III	coord: 1..249
None	No IPR available	PANTHER	PTHR12709:SF5	DNA-DIRECTED RNA POLYMERASE I SUBUNIT RPA43	coord: 1..249

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh09G001140.1	CmoCh09G001140.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006352	DNA-templated transcription, initiation
cellular_component	GO:0005736	RNA polymerase I complex
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity