CmoCh09G001070 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh09G001070
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionUnknown protein
LocationCmo_Chr09: 503919 .. 504840 (-)
RNA-Seq ExpressionCmoCh09G001070
SyntenyCmoCh09G001070
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGGTAAAAACAGTGTTCTGTTTCAGTAATTATTCCTTACCAATTTACATACTAAAATCCTAGATTTATTGTAAGGGTTTTCAACAAATGGCAGCTAAAGCTAGAGGAACAAGTTGAAAAGGAAAATGCAAAGAGAGAGCCGTTTGATTCAAATTGGACGGTGATTAAAGGGTGAAGTTTATACCATTAATTGTCCTTCTCTACACACATCCCAAGGCGTCCCTCTATTTTAATACGACTTTTATTTATGGAACTCAAAAACGGGTTTCATTAGCGAAATCTTCACCGAGACAAATCCACAATTGGCTTTAAGGATTTCAAACGCCTCATTTGTCTGCAGGCGCGCTCTCCCTCTCTCTCTCTGTCTCGCTCGCCTTCGTCTCTCCATCCTCATCTTTTTCTCTACTTCTCCGACGGTCCGCCGAGGCATTTTGGCGGCGCCGATCGCCGATTTGTCTCTCTGCCGTCGATCTCGTACTGTCAGTCGACGATTCTCCTCTATCGGCTGCTTCTGAACGAACTTTTCCGAGTTTTGATTTTCTTTGTATTGGCTGATTCTTTGATTTTGCCTCAAGGTAATAATTATTTGATTCTAATCTCTCTATCGCATTTTCTCTATTGAATTGTAGGATTTATTATGTTTTCCTTCATTTCTGGCATTGAGCTTTATTTAGTCTTCAGATTGCTCGGTTGAGACTTGATATGCTTGATGTTTTGTTTTATTAGGTCTCCCTGGTTATTTTATTCTTGCTTCTTGGTCTTTCTGGTCTTAGATGGATAATGTTTAGAGATTTTACTTTATTGTTGGATACTCTTTTCTTTGTGGTTGTTAGGTAGATGCCCACGACGCTTTGTTGCCCCACAATTTGAAGTTTCGAGCACTGTTCCTATTGTTTCTTGTTTGATCGCCATTGATTAA

mRNA sequence

ATGTCGGCGCGCTCTCCCTCTCTCTCTCTGTCTCGCTCGCCTTCGTCTCTCCATCCTCATCTTTTTCTCTACTTCTCCGACGGTCCGCCGAGGCATTTTGGCGGCGCCGATCGCCGATTTGTCTCTCTGCCGTCGATCTCGTACTGTCAGTCGACGATTCTCCTCTATCGGCTGCTTCTGAACGAACTTTTCCGAGTTTTGATTTTCTTTGTATTGGCTGATTCTTTGATTTTGCCTCAAGGTAGATGCCCACGACGCTTTGTTGCCCCACAATTTGAAGTTTCGAGCACTGTTCCTATTGTTTCTTGTTTGATCGCCATTGATTAA

Coding sequence (CDS)

ATGTCGGCGCGCTCTCCCTCTCTCTCTCTGTCTCGCTCGCCTTCGTCTCTCCATCCTCATCTTTTTCTCTACTTCTCCGACGGTCCGCCGAGGCATTTTGGCGGCGCCGATCGCCGATTTGTCTCTCTGCCGTCGATCTCGTACTGTCAGTCGACGATTCTCCTCTATCGGCTGCTTCTGAACGAACTTTTCCGAGTTTTGATTTTCTTTGTATTGGCTGATTCTTTGATTTTGCCTCAAGGTAGATGCCCACGACGCTTTGTTGCCCCACAATTTGAAGTTTCGAGCACTGTTCCTATTGTTTCTTGTTTGATCGCCATTGATTAA

Protein sequence

MSARSPSLSLSRSPSSLHPHLFLYFSDGPPRHFGGADRRFVSLPSISYCQSTILLYRLLLNELFRVLIFFVLADSLILPQGRCPRRFVAPQFEVSSTVPIVSCLIAID
Homology
[Close]
BLAST of CmoCh09G001070 vs. NCBI nr
Match: KAG6591275.1 (hypothetical protein SDJN03_13621, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 208.8 bits (530), Expect = 2.4e-50
Identity = 105/106 (99.06%), Postives = 105/106 (99.06%), Query Frame = 0 

Query: 3   ARSPSLSLSRSPSSLHPHLFLYFSDGPPRHFGGADRRFVSLPSISYCQSTILLYRLLLNE 62
           ARSPSLSLSRSPSSLHPHLFLYFSDGPPRHFGGADRRFVSLPSISYCQSTILLYRLLLNE
Sbjct: 60  ARSPSLSLSRSPSSLHPHLFLYFSDGPPRHFGGADRRFVSLPSISYCQSTILLYRLLLNE 119

Query: 63  LFRVLIFFVLADSLILPQGRCPRRFVAPQFEVSSTVPIVSCLIAID 109
           LFRVLIFFVL DSLILPQGRCPRRFVAPQFEVSSTVPIVSCLIAID
Sbjct: 120 LFRVLIFFVLVDSLILPQGRCPRRFVAPQFEVSSTVPIVSCLIAID 165

[Close]
BLAST of CmoCh09G001070 vs. NCBI nr
Match: KAG7024160.1 (hypothetical protein SDJN02_12973, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 155.2 bits (391), Expect = 3.2e-34
Identity = 78/81 (96.30%), Postives = 79/81 (97.53%), Query Frame = 0 

Query: 1   MSARSPSLSLSRSPSSLHPHLFLYFSDGPPRHFGGADRRFVSLPSISYCQSTILLYRLLL 60
           + ARSPSLSLSRSPSSLHPHLFLYFSDGPPRHFGGADRRFVSLPSISYCQSTILLYRLLL
Sbjct: 83  LPARSPSLSLSRSPSSLHPHLFLYFSDGPPRHFGGADRRFVSLPSISYCQSTILLYRLLL 142

Query: 61  NELFRVLIFFVLADSLILPQG 82
           NELFRVLIFFVL DSLILPQG
Sbjct: 143 NELFRVLIFFVLVDSLILPQG 163

The following BLAST results are available for this feature:
BLAST of CmoCh09G001070 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh09G001070 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh09G001070 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6591275.12.4e-5099.06hypothetical protein SDJN03_13621, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7024160.13.2e-3496.30hypothetical protein SDJN02_12973, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of CmoCh09G001070 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh09G001070.1CmoCh09G001070.1mRNA