CmoCh09G001050 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh09G001050
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionUnknown protein
LocationCmo_Chr09: 500195 .. 501155 (-)
RNA-Seq ExpressionCmoCh09G001050
SyntenyCmoCh09G001050
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTCTAAATCTCAGTTTCCCTCTTAGCCCGTACACAGTAGATGGAACAATGATGAGGATTGAGTTGCCAATCCTGGCGTTCATGTAAATTTGTTGTTTCTATTTCAATTTTACTTTTTATTTGGACGGTAGCCGATGGGGTCTAGCGGTAGTAGTATATCTTGCGGTTCTTGTCGAAATAATATGTGGCATGGCTACAATGTTCGCATTATATACCTTGGCTATCGGTTTGGATGAATTTTTGATGTTTCTCAATTCAGGTCTCCGTCCGAAGCGCTTTTTGCACAAAAGATGATTTGGATCAATCTTTGCTTAGAAGAGATATCCTTGAGGACGCTCTCTGCCCAACAATTTAACGGGTAAGTTTTCCCTTTTTACTTCATATCTTTTTAGTTATTCCTTGATAAGTAGACAAAAAAATAATTAGTGATATAGTGATAAAAAGTTCAATGAAAGTAATTGAAAAGTTGTTGGATTTATTCAGGCATAAAACACTAAGCGATCGGCCCCACCAATATAAAAAAACAAACAAAATAGTCTCTCTTTTTACTAATTTTCCAATTTTCCAATTCAAACGTAAACTTGAAGAAAACCGAAATATGAAGCTGAATTAATGCATGAAAGTGGAATTTGGGTTCAGCTGTTGCAGGCCCAAAGATTCTTAGACACCTTGTCCTGATCTTCTTTATACCGTCAAAACCACCAAGACTTGCTCAATTGTGATCTAACCGCTTTATGGCCTTGTTAGAAGGAACCACCCCCACCGTTTTAGGGTGAATTTGGCTGAAAATTAATTATGCACTTTGAAAACACATTTTAATTAGTAAATTAAAAGGTTGCTATGTTTTAGTTCGATATATTATATGTATGGAGCAGATTAATGTTTGAAGAAGACACTATACTTTTAGCAGAATATAATCGGTTGGCCAAATCCATTGCTGTTTTCTAGCCACTCCCCC

mRNA sequence

ATGTTTCTAAATCTCAGTTTCCCTCTTAGCCCGTACACAGTAGATGGAACAATGATGAGGATTGAGTTGCCAATCCTGGCGTTCATGTCTCCGTCCGAAGCGCTTTTTGCACAAAAGATGATTTGGATCAATCTTTGCTTAGAAGAGATATCCTTGAGGACGCTCTCTGCCCAACAATTTAACGGGTAAGTTTTCCCTTTTTACTTCATATCTTTTTAGTTATTCCTTGATAAGTAGACAAAAAAATAATTAGTGATATAGTGATAAAAAGTTCAATGAAAGTAATTGAAAAGTTGTTGGATTTATTCAGGCATAAAACACTAAGCGATCGGCCCCACCAATATAAAAAAACAAACAAAATAGTCTCTCTTTTTACTAATTTTCCAATTTTCCAATTCAAACGTAAACTTGAAGAAAACCGAAATATGAAGCTGAATTAATGCATGAAAGTGGAATTTGGGTTCAGCTGTTGCAGGCCCAAAGATTCTTAGACACCTTGTCCTGATCTTCTTTATACCGTCAAAACCACCAAGACTTGCTCAATTGTGATCTAACCGCTTTATGGCCTTGTTAGAAGGAACCACCCCCACCGTTTTAGGGTGAATTTGGCTGAAAATTAATTATGCACTTTGAAAACACATTTTAATTAGTAAATTAAAAGGTTGCTATGTTTTAGTTCGATATATTATATGTATGGAGCAGATTAATGTTTGAAGAAGACACTATACTTTTAGCAGAATATAATCGGTTGGCCAAATCCATTGCTGTTTTCTAGCCACTCCCCC

Coding sequence (CDS)

ATGTTTCTAAATCTCAGTTTCCCTCTTAGCCCGTACACAGTAGATGGAACAATGATGAGGATTGAGTTGCCAATCCTGGCGTTCATGTCTCCGTCCGAAGCGCTTTTTGCACAAAAGATGATTTGGATCAATCTTTGCTTAGAAGAGATATCCTTGAGGACGCTCTCTGCCCAACAATTTAACGGGTAA

Protein sequence

MFLNLSFPLSPYTVDGTMMRIELPILAFMSPSEALFAQKMIWINLCLEEISLRTLSAQQFNG
Homology
[Close]
BLAST of CmoCh09G001050 vs. NCBI nr
Match: KAG7024159.1 (HVA22-like protein i, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 90.5 bits (223), Expect = 5.5e-15
Identity = 47/50 (94.00%), Postives = 48/50 (96.00%), Query Frame = 0 

Query: 13  TVDGTMMRIELPILAFMSPSEALFAQKMIWINLCLEEISLRTLSAQQFNG 63
           +VDGTMMRIELPILA  SPSEALFAQKMIWINLCLEEISLRTLSAQQFNG
Sbjct: 323 SVDGTMMRIELPILA--SPSEALFAQKMIWINLCLEEISLRTLSAQQFNG 370

The following BLAST results are available for this feature:
BLAST of CmoCh09G001050 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh09G001050 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh09G001050 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7024159.15.5e-1594.00HVA22-like protein i, partial [Cucurbita argyrosperma subsp. argyrosperma][more]
BLAST of CmoCh09G001050 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh09G001050.1CmoCh09G001050.1mRNA