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CmoCh09G000960 (gene) Cucurbita moschata (Rifu) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AACCACCGCCGCGGACTGAAGCGCGTCAACCATGGGTCATATGGTTCGGGCTCTCCGGCACTGGCCGATGTTGCAGAATCACTGTTTCGGTTGCACCGTACATCATTTTCTCTCATCTCCGCCGTGGGTGGCCAAAAGAATCGACTCTCGTCGACTAACTTTAGCTACCGTTCATTCTGCTCGTCGCGAAGTCCAATATGGATCGAAAGGTCTCAGATTATCCAAAGCTCAAGCTCCGGCCGAATTCCAAGAAGATGAGAGCGTTGATGAGGACTTGGATGTTAGAAAGAGCCGGAACCAGCTTAAACGGGAAGCTCGACGAGCCGTCCAATGGGGCATGGATCTCGCGGCCTTCTCCACTCCTCAAATTAAACGCATCCTTAGGTAATCATATCCTCTCATAACATTATCCGGCGACTTCTTATTCTTGTATAATGTTTATCACTGATAATCTTCGGGAGATGGTAAAGGAGTTTGAGTTTCCAAGTTTAGTGAGACTAATGCGAGATTTCTTTTACTTGTCCGGGGTGATAGAGTGGCGTCCCTCGAGAAAGATGTCTTCGATGCAATAATGCTTGTGAAGGTGATTCTTATAGTGCTTGAATTTTGTGGTTAGTCGTATCCTTTGGCAGTATGGCAACGCATGAACTTTTTATGTAGCTAAGGTGTTTGATTTTTTGACGCAGAGGCTTGGGCGTGATGTCAGAGAAGGAAAACGAAGGCAGTTTAGTTACATTGGTAAGCTGATATTTGATATTTCATTCTTTTGTAAAATGTGCATTTCGGCCATTCGTGTTAGTAGTTAGAACTGATAAAAATCACGACTCTCCACAATTGTATAACATTATCCACTTTGAGCCTAAGCTCTCGTGGTTTTGCTTTTTGTTTCCCAAAATACCTCATATCAATAGAGATAGTGTTCCTTATTTATAAACTCATAATCTTCCTCCTCTTAATTAGTTAACGTGGGACTACTTCTTTCAATAATCCTCAACATTCCTCCCATCGAACAAAGTAGACCATAAAACCTCTTCTTAGGCTTATGGACCCCTTAAACAGTCTCCCCTTAATCGAGGCTCGACTCCTTTCTCTAGTGCCTTCGAACAAAATACACCCTTTGTTCGACACTTGAGTCACTTTTGACTACACCTTCGAGGCTCACAACTTCTTTGTTCGACATTTGAGGATTCTATTGACATGGCTAAGTTAAGGCATGGCTCTAATATCATGTTAGAAATCACGACTCCCCATAATAGTATGATATTGTTCACTTTGAGCATAAGCTCTTATGGCTTTGCTTTTTGTTTCCCAAAAGGTCTCATACCAATGGAGGGACACTTTGTTCCTTACCTATAAACCCATAATCTTTCTCTTAATTAGCCAATGTGGGACCACTTCTTTCGGTATTCTAATGTAAGAATATTAAACTTGGATCACCATGACGTGATGGTTTATCAAGAACAATTGAAGAAGAAATATAAACTTGCTGCCTATGCGATCCTTGACAAACGTATGAGACCGAGATCCTGTAAAATGTAAGGCACAAAATCGCATTTTAAGAGAACAGTCTTCTCAAATTTGAAATGGAGGGCCTTGAAATGACCATAACTCTGGTTAGGGTATTGGGGTCATTGTTCTAAGCAGCACGGACTTGGGACACAAACATGTCATGATGCAGATATGATGATATGTCAATTTCTACAGAAGTAGAACACAAACACGTTGGGGACATGTTTTTAGAATATATGTGTGTATAATTGATACATTAATACTTCTTTAGCTAAGGAAGTGTAAATTTATTTTTCCAAAGCATTCGTATTCTGTGGCTCTGATAAATTGGCTTAATTTGCTATAGGAAAACTGCTGAGGGATGTTCAACCTGAATTAATGGACAGTTTAATACAGGCCACAAAAGACGGTGACCATAGCATGCTGCAGACATTGTCTGGTTCGGTAGCAGTTGACGATGATGAAGATACAGACTCTGAATATGAGGAGGAGGAAGAAGAGGTATTTTATGTCCTGGTTCTTTTACACATTACCGCTTCTTTTACATACCAAATTGTTATAATTTTTGTTAAAGTTTATTTGTCTTGCTGACCTTTTCTAAGACTATACTACAGCATGGAACCGAATGAAATGTAAAAACTACACTTAGAAATTAGAGCCAGCGGAGTATGGCTACTGTTGCTTTATTAGGATTTAACTTTGATTAATATACAGGAACTTGTCAAAACTGTAAAAACCCATGTTTTTTTTTTTTTGTGATGAGTAAAAACCTATGTTTCTGGACTCAATTGAAGGGGCATTATGTTCATAAATGTCATTTTATACCATGTTCATTTTAATTTTAGAAGTTTTTCTTCCCCTTTCCCTCCATATCTTTCTTAATTAGGGTCCGCATGTGGACATTGTTACAAGATGGCTTGATGGGTTAGTCAGTAAGGACAAGAACGTTACAAATGAAATTTATTCGCTACAAACTGTTGAATTTGACCGTCAGGTACTTGACTTACTACATCCCTACTTTTTTCTCTTCTTTTCTTTTCATGTCAATGGTGTGCCACCCTTACCCATTTTTGTAACGTTCTAAGTTGTTTAAGATTTTGGGTGTGTGTGTGAGAGAGAGAGAGATAATAAACATTAAGAGAAAATGTCAAAAAGAGGTGAAAACCCCTATCCAAGGGAAATTAACAGGAAAAAAAAAAAAACACTTCCACTGGGCTATAATTGTAGAAAAGCTATAGCTCTGAAAATATGAAGAAAATGTACACTAAGTGAGCGCCAAAAAAAAGGATCGTGTTTAAGAAAAAACCATGGAAGGCAAATAAAAGTTATTTAAGATAGTTGCAAACAAAAGAGGGCCTCTGTATGCATCTAGCTGAAAAAGTTATAATCAGGCCTGCCTTGTCAACTATCAATTACCCAAGAACAATAGGACAAGATTTTCGGAACAATTACAACTTGAAGCTTTTATTAGCTAAGTTAGATAATCTATTCCCATGCGATTCTGACTAGCATGAAAATCATCAACAGGAGCTGCGGAGACTTGTCCGAAAAGTGCACATGGTTGAAGAACGCAAGGCGGCAACTGAAGAGAATGAGGATGAAGTCAATGTGGCAATAACAACCGCTAAGAAGCCCCTTGCTCGTTTTCTTTGTAGAATGGCGAAACAACTGCCCCCTTATGAACTCTAGTACAAATTTATTTGTGCACTACATTAACTTCGCATTCTTTCTTATGCACACATATTTGTTTTTTATAACCTTGCAGACTGTTAATTCTCACTTCCAACACATTTTTTCTTTTCCCTCTCACCTTCTTTCAACTCTGCTTGATCAAGTTGTTGAGTGCTAACTAGGCTCTTAGAGACTGTTTACCAGGC AACCACCGCCGCGGACTGAAGCGCGTCAACCATGGGTCATATGGTTCGGGCTCTCCGGCACTGGCCGATGTTGCAGAATCACTGTTTCGGTTGCACCGTACATCATTTTCTCTCATCTCCGCCGTGGGTGGCCAAAAGAATCGACTCTCGTCGACTAACTTTAGCTACCGTTCATTCTGCTCGTCGCGAAGTCCAATATGGATCGAAAGGTCTCAGATTATCCAAAGCTCAAGCTCCGGCCGAATTCCAAGAAGATGAGAGCGTTGATGAGGACTTGGATGTTAGAAAGAGCCGGAACCAGCTTAAACGGGAAGCTCGACGAGCCGTCCAATGGGGCATGGATCTCGCGGCCTTCTCCACTCCTCAAATTAAACGCATCCTTAGAGTGGCGTCCCTCGAGAAAGATGTCTTCGATGCAATAATGCTTGTGAAGAGGCTTGGGCGTGATGTCAGAGAAGGAAAACGAAGGCAGTTTAGTTACATTGGAAAACTGCTGAGGGATGTTCAACCTGAATTAATGGACAGTTTAATACAGGCCACAAAAGACGGTGACCATAGCATGCTGCAGACATTGTCTGGTTCGGTAGCAGTTGACGATGATGAAGATACAGACTCTGAATATGAGGAGGAGGAAGAAGAGGGTCCGCATGTGGACATTGTTACAAGATGGCTTGATGGGTTAGTCAGTAAGGACAAGAACGTTACAAATGAAATTTATTCGCTACAAACTGTTGAATTTGACCGTCAGGAGCTGCGGAGACTTGTCCGAAAAGTGCACATGGTTGAAGAACGCAAGGCGGCAACTGAAGAGAATGAGGATGAAGTCAATGTGGCAATAACAACCGCTAAGAAGCCCCTTGCTCGTTTTCTTTGTAGAATGGCGAAACAACTGCCCCCTTATGAACTCTAGTACAAATTTATTTGTGCACTACATTAACTTCGCATTCTTTCTTATGCACACATATTTGTTTTTTATAACCTTGCAGACTGTTAATTCTCACTTCCAACACATTTTTTCTTTTCCCTCTCACCTTCTTTCAACTCTGCTTGATCAAGTTGTTGAGTGCTAACTAGGCTCTTAGAGACTGTTTACCAGGC ATGGGTCATATGGTTCGGGCTCTCCGGCACTGGCCGATGTTGCAGAATCACTGTTTCGGTTGCACCGTACATCATTTTCTCTCATCTCCGCCGTGGGTGGCCAAAAGAATCGACTCTCGTCGACTAACTTTAGCTACCGTTCATTCTGCTCGTCGCGAAGTCCAATATGGATCGAAAGGTCTCAGATTATCCAAAGCTCAAGCTCCGGCCGAATTCCAAGAAGATGAGAGCGTTGATGAGGACTTGGATGTTAGAAAGAGCCGGAACCAGCTTAAACGGGAAGCTCGACGAGCCGTCCAATGGGGCATGGATCTCGCGGCCTTCTCCACTCCTCAAATTAAACGCATCCTTAGAGTGGCGTCCCTCGAGAAAGATGTCTTCGATGCAATAATGCTTGTGAAGAGGCTTGGGCGTGATGTCAGAGAAGGAAAACGAAGGCAGTTTAGTTACATTGGAAAACTGCTGAGGGATGTTCAACCTGAATTAATGGACAGTTTAATACAGGCCACAAAAGACGGTGACCATAGCATGCTGCAGACATTGTCTGGTTCGGTAGCAGTTGACGATGATGAAGATACAGACTCTGAATATGAGGAGGAGGAAGAAGAGGGTCCGCATGTGGACATTGTTACAAGATGGCTTGATGGGTTAGTCAGTAAGGACAAGAACGTTACAAATGAAATTTATTCGCTACAAACTGTTGAATTTGACCGTCAGGAGCTGCGGAGACTTGTCCGAAAAGTGCACATGGTTGAAGAACGCAAGGCGGCAACTGAAGAGAATGAGGATGAAGTCAATGTGGCAATAACAACCGCTAAGAAGCCCCTTGCTCGTTTTCTTTGTAGAATGGCGAAACAACTGCCCCCTTATGAACTCTAG MGHMVRALRHWPMLQNHCFGCTVHHFLSSPPWVAKRIDSRRLTLATVHSARREVQYGSKGLRLSKAQAPAEFQEDESVDEDLDVRKSRNQLKREARRAVQWGMDLAAFSTPQIKRILRVASLEKDVFDAIMLVKRLGRDVREGKRRQFSYIGKLLRDVQPELMDSLIQATKDGDHSMLQTLSGSVAVDDDEDTDSEYEEEEEEGPHVDIVTRWLDGLVSKDKNVTNEIYSLQTVEFDRQELRRLVRKVHMVEERKAATEENEDEVNVAITTAKKPLARFLCRMAKQLPPYEL Homology
BLAST of CmoCh09G000960 vs. ExPASy Swiss-Prot
Match: A4SHW3 (UPF0307 protein ASA_0301 OS=Aeromonas salmonicida (strain A449) OX=382245 GN=ASA_0301 PE=3 SV=1) HSP 1 Score: 48.9 bits (115), Expect = 1.1e-04 Identity = 43/184 (23.37%), Postives = 87/184 (47.28%), Query Frame = 0
BLAST of CmoCh09G000960 vs. ExPASy Swiss-Prot
Match: B4EX40 (UPF0307 protein PMI3641 OS=Proteus mirabilis (strain HI4320) OX=529507 GN=PMI3641 PE=3 SV=1) HSP 1 Score: 48.5 bits (114), Expect = 1.5e-04 Identity = 48/185 (25.95%), Postives = 87/185 (47.03%), Query Frame = 0
BLAST of CmoCh09G000960 vs. ExPASy Swiss-Prot
Match: Q2NWN5 (UPF0307 protein SG0165 OS=Sodalis glossinidius (strain morsitans) OX=343509 GN=SG0165 PE=3 SV=1) HSP 1 Score: 46.6 bits (109), Expect = 5.6e-04 Identity = 34/109 (31.19%), Postives = 58/109 (53.21%), Query Frame = 0
BLAST of CmoCh09G000960 vs. ExPASy Swiss-Prot
Match: Q7W3Y8 (UPF0307 protein BPP3887 OS=Bordetella parapertussis (strain 12822 / ATCC BAA-587 / NCTC 13253) OX=257311 GN=BPP3887 PE=3 SV=2) HSP 1 Score: 46.6 bits (109), Expect = 5.6e-04 Identity = 33/122 (27.05%), Postives = 62/122 (50.82%), Query Frame = 0
BLAST of CmoCh09G000960 vs. ExPASy Swiss-Prot
Match: Q7WFC0 (UPF0307 protein BB4360 OS=Bordetella bronchiseptica (strain ATCC BAA-588 / NCTC 13252 / RB50) OX=257310 GN=BB4360 PE=3 SV=1) HSP 1 Score: 46.6 bits (109), Expect = 5.6e-04 Identity = 33/122 (27.05%), Postives = 62/122 (50.82%), Query Frame = 0
BLAST of CmoCh09G000960 vs. ExPASy TrEMBL
Match: A0A6J1FF35 (uncharacterized protein LOC111443507 OS=Cucurbita moschata OX=3662 GN=LOC111443507 PE=4 SV=1) HSP 1 Score: 571.6 bits (1472), Expect = 1.8e-159 Identity = 292/292 (100.00%), Postives = 292/292 (100.00%), Query Frame = 0
BLAST of CmoCh09G000960 vs. ExPASy TrEMBL
Match: A0A6J1IM05 (uncharacterized protein LOC111476812 OS=Cucurbita maxima OX=3661 GN=LOC111476812 PE=4 SV=1) HSP 1 Score: 563.1 bits (1450), Expect = 6.6e-157 Identity = 288/292 (98.63%), Postives = 289/292 (98.97%), Query Frame = 0
BLAST of CmoCh09G000960 vs. ExPASy TrEMBL
Match: A0A6J1CG71 (uncharacterized protein LOC111011113 OS=Momordica charantia OX=3673 GN=LOC111011113 PE=4 SV=1) HSP 1 Score: 471.5 bits (1212), Expect = 2.6e-129 Identity = 242/292 (82.88%), Postives = 261/292 (89.38%), Query Frame = 0
BLAST of CmoCh09G000960 vs. ExPASy TrEMBL
Match: A0A0A0LH61 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G872730 PE=4 SV=1) HSP 1 Score: 429.5 bits (1103), Expect = 1.1e-116 Identity = 238/299 (79.60%), Postives = 252/299 (84.28%), Query Frame = 0
BLAST of CmoCh09G000960 vs. ExPASy TrEMBL
Match: A0A1S4E5I7 (UPF0307 protein Asuc_0809 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103503870 PE=4 SV=1) HSP 1 Score: 422.2 bits (1084), Expect = 1.8e-114 Identity = 233/297 (78.45%), Postives = 247/297 (83.16%), Query Frame = 0
BLAST of CmoCh09G000960 vs. NCBI nr
Match: XP_022937103.1 (uncharacterized protein LOC111443507 [Cucurbita moschata]) HSP 1 Score: 571.6 bits (1472), Expect = 3.8e-159 Identity = 292/292 (100.00%), Postives = 292/292 (100.00%), Query Frame = 0
BLAST of CmoCh09G000960 vs. NCBI nr
Match: KAG7024147.1 (hypothetical protein SDJN02_12960, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 567.4 bits (1461), Expect = 7.2e-158 Identity = 290/292 (99.32%), Postives = 291/292 (99.66%), Query Frame = 0
BLAST of CmoCh09G000960 vs. NCBI nr
Match: XP_023535041.1 (uncharacterized protein LOC111796585 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 566.2 bits (1458), Expect = 1.6e-157 Identity = 288/292 (98.63%), Postives = 291/292 (99.66%), Query Frame = 0
BLAST of CmoCh09G000960 vs. NCBI nr
Match: XP_022976393.1 (uncharacterized protein LOC111476812 [Cucurbita maxima]) HSP 1 Score: 563.1 bits (1450), Expect = 1.4e-156 Identity = 288/292 (98.63%), Postives = 289/292 (98.97%), Query Frame = 0
BLAST of CmoCh09G000960 vs. NCBI nr
Match: KAG6591265.1 (hypothetical protein SDJN03_13611, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 560.1 bits (1442), Expect = 1.1e-155 Identity = 290/293 (98.98%), Postives = 290/293 (98.98%), Query Frame = 0
BLAST of CmoCh09G000960 vs. TAIR 10
Match: AT4G24175.1 (unknown protein; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0307 (InterPro:IPR006839); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). ) HSP 1 Score: 232.6 bits (592), Expect = 3.9e-61 Identity = 146/305 (47.87%), Postives = 194/305 (63.61%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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