CmoCh09G000720 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh09G000720
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Large proline-rich protein BAG6 isoform X2
Location	Cmo_Chr09: 323370 .. 323696 (+)
RNA-Seq Expression	CmoCh09G000720
Synteny	CmoCh09G000720

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGCCTTCATCTCCGTCTAGCTCAGCCCCTGAATTTCAAATGCCCAAAAAGCCACTCAGTTTATTCGCCAATGCACTAAAACGCAAGGATAGCTTCATTCAGTTCTTCGCCATGACTGGTATTTTGCTTCTAAGCGTCCGATCCTTGGGTCAGAAGTACCGTATCCACGACCTTCAAGAGGACACTACGGCTCTCAAACAAGAACAGGAAACCCTAATGGACCGTATGAAGAACATCAAGCGCAGCCTCCTTCACGAGGCATCCCTTGACTCCACTGGCCTCTTCGCATCCAGGCTTCGCCTTCTCTTCAGCCAAGAAGACTGA

mRNA sequence

ATGGCGCCTTCATCTCCGTCTAGCTCAGCCCCTGAATTTCAAATGCCCAAAAAGCCACTCAGTTTATTCGCCAATGCACTAAAACGCAAGGATAGCTTCATTCAGTTCTTCGCCATGACTGGTATTTTGCTTCTAAGCGTCCGATCCTTGGGTCAGAAGTACCGTATCCACGACCTTCAAGAGGACACTACGGCTCTCAAACAAGAACAGGAAACCCTAATGGACCGTATGAAGAACATCAAGCGCAGCCTCCTTCACGAGGCATCCCTTGACTCCACTGGCCTCTTCGCATCCAGGCTTCGCCTTCTCTTCAGCCAAGAAGACTGA

Coding sequence (CDS)

ATGGCGCCTTCATCTCCGTCTAGCTCAGCCCCTGAATTTCAAATGCCCAAAAAGCCACTCAGTTTATTCGCCAATGCACTAAAACGCAAGGATAGCTTCATTCAGTTCTTCGCCATGACTGGTATTTTGCTTCTAAGCGTCCGATCCTTGGGTCAGAAGTACCGTATCCACGACCTTCAAGAGGACACTACGGCTCTCAAACAAGAACAGGAAACCCTAATGGACCGTATGAAGAACATCAAGCGCAGCCTCCTTCACGAGGCATCCCTTGACTCCACTGGCCTCTTCGCATCCAGGCTTCGCCTTCTCTTCAGCCAAGAAGACTGA

Protein sequence

MAPSSPSSSAPEFQMPKKPLSLFANALKRKDSFIQFFAMTGILLLSVRSLGQKYRIHDLQEDTTALKQEQETLMDRMKNIKRSLLHEASLDSTGLFASRLRLLFSQED

Homology

[Close]

BLAST of CmoCh09G000720 vs. ExPASy TrEMBL
Match: A0A6J1FDG4 (uncharacterized protein LOC111443106 OS=Cucurbita moschata OX=3662 GN=LOC111443106 PE=4 SV=1)

HSP 1 Score: 203.4 bits (516), Expect = 4.9e-49
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 0


Query: 1   MAPSSPSSSAPEFQMPKKPLSLFANALKRKDSFIQFFAMTGILLLSVRSLGQKYRIHDLQ 60
           MAPSSPSSSAPEFQMPKKPLSLFANALKRKDSFIQFFAMTGILLLSVRSLGQKYRIHDLQ
Sbjct: 1   MAPSSPSSSAPEFQMPKKPLSLFANALKRKDSFIQFFAMTGILLLSVRSLGQKYRIHDLQ 60

Query: 61  EDTTALKQEQETLMDRMKNIKRSLLHEASLDSTGLFASRLRLLFSQED 109
           EDTTALKQEQETLMDRMKNIKRSLLHEASLDSTGLFASRLRLLFSQED
Sbjct: 61  EDTTALKQEQETLMDRMKNIKRSLLHEASLDSTGLFASRLRLLFSQED 108

[Close]

BLAST of CmoCh09G000720 vs. ExPASy TrEMBL
Match: A0A6J1IKL0 (uncharacterized protein LOC111476471 OS=Cucurbita maxima OX=3661 GN=LOC111476471 PE=4 SV=1)

HSP 1 Score: 199.1 bits (505), Expect = 9.2e-48
Identity = 105/108 (97.22%), Postives = 108/108 (100.00%), Query Frame = 0


Query: 1   MAPSSPSSSAPEFQMPKKPLSLFANALKRKDSFIQFFAMTGILLLSVRSLGQKYRIHDLQ 60
           MAPSSPSSSAPEFQMPKKPLSLFANALKRKDSFIQFFAM+GILLLSVRSLGQKYRIHDLQ
Sbjct: 1   MAPSSPSSSAPEFQMPKKPLSLFANALKRKDSFIQFFAMSGILLLSVRSLGQKYRIHDLQ 60

Query: 61  EDTTALKQEQETLMDRMKNIKRSLLHEASLDSTGLFASRLRLLFSQED 109
           EDTTALKQEQETL+DRMKNIKRSLLHEASLDSTGLFASRLRLLFSQ+D
Sbjct: 61  EDTTALKQEQETLIDRMKNIKRSLLHEASLDSTGLFASRLRLLFSQDD 108

[Close]

BLAST of CmoCh09G000720 vs. ExPASy TrEMBL
Match: A0A6J1CMC7 (uncharacterized protein LOC111012778 OS=Momordica charantia OX=3673 GN=LOC111012778 PE=4 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 1.6e-44
Identity = 98/108 (90.74%), Postives = 103/108 (95.37%), Query Frame = 0


Query: 1   MAPSSPSSSAPEFQMPKKPLSLFANALKRKDSFIQFFAMTGILLLSVRSLGQKYRIHDLQ 60
           MAPS+PSSSAPEFQ+PKKPL LFANALKRKDSFIQFFAMTGI+LLSVRSLGQKYRIHDLQ
Sbjct: 1   MAPSAPSSSAPEFQLPKKPLGLFANALKRKDSFIQFFAMTGIMLLSVRSLGQKYRIHDLQ 60

Query: 61  EDTTALKQEQETLMDRMKNIKRSLLHEASLDSTGLFASRLRLLFSQED 109
           EDT+ALKQE ETL+DRMKNIKRSLLHEASLD TG FASRLRLLFS ED
Sbjct: 61  EDTSALKQEHETLIDRMKNIKRSLLHEASLDPTGFFASRLRLLFSDED 108

[Close]

BLAST of CmoCh09G000720 vs. ExPASy TrEMBL
Match: A0A0A0L5S3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G653420 PE=4 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 8.4e-41
Identity = 94/108 (87.04%), Postives = 99/108 (91.67%), Query Frame = 0


Query: 1   MAPSSPSSSAPEFQMPKKPLSLFANALKRKDSFIQFFAMTGILLLSVRSLGQKYRIHDLQ 60
           MAPS+PSSS PEFQM KKPL L+ANALKRKDSFIQ  AMTGILLLS RSLGQKYRI+DLQ
Sbjct: 1   MAPSAPSSSTPEFQMSKKPLGLYANALKRKDSFIQLLAMTGILLLSFRSLGQKYRINDLQ 60

Query: 61  EDTTALKQEQETLMDRMKNIKRSLLHEASLDSTGLFASRLRLLFSQED 109
           EDTTALKQE ETL+DRMKNIKRSLLHEASL+STG FASRLRLLFS ED
Sbjct: 61  EDTTALKQEHETLVDRMKNIKRSLLHEASLESTGHFASRLRLLFSDED 108

[Close]

BLAST of CmoCh09G000720 vs. ExPASy TrEMBL
Match: A0A1S3BW63 (uncharacterized protein LOC103493794 OS=Cucumis melo OX=3656 GN=LOC103493794 PE=4 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 2.3e-38
Identity = 89/108 (82.41%), Postives = 95/108 (87.96%), Query Frame = 0


Query: 1   MAPSSPSSSAPEFQMPKKPLSLFANALKRKDSFIQFFAMTGILLLSVRSLGQKYRIHDLQ 60
           MAPS+PSSS PEFQM KKPL  +AN LK KD  IQ  AMTGILLLS RSLGQKYRI++LQ
Sbjct: 1   MAPSAPSSSTPEFQMSKKPLGFYANVLKHKDGLIQLLAMTGILLLSCRSLGQKYRINNLQ 60

Query: 61  EDTTALKQEQETLMDRMKNIKRSLLHEASLDSTGLFASRLRLLFSQED 109
           EDTTALKQE ETL+DRMKNIKRSLLHEASL+STGLFASRLRLLFS ED
Sbjct: 61  EDTTALKQEHETLVDRMKNIKRSLLHEASLESTGLFASRLRLLFSDED 108

[Close]

BLAST of CmoCh09G000720 vs. NCBI nr
Match: XP_022936518.1 (uncharacterized protein LOC111443106 [Cucurbita moschata])

HSP 1 Score: 203.4 bits (516), Expect = 1.0e-48
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 0


Query: 1   MAPSSPSSSAPEFQMPKKPLSLFANALKRKDSFIQFFAMTGILLLSVRSLGQKYRIHDLQ 60
           MAPSSPSSSAPEFQMPKKPLSLFANALKRKDSFIQFFAMTGILLLSVRSLGQKYRIHDLQ
Sbjct: 1   MAPSSPSSSAPEFQMPKKPLSLFANALKRKDSFIQFFAMTGILLLSVRSLGQKYRIHDLQ 60

Query: 61  EDTTALKQEQETLMDRMKNIKRSLLHEASLDSTGLFASRLRLLFSQED 109
           EDTTALKQEQETLMDRMKNIKRSLLHEASLDSTGLFASRLRLLFSQED
Sbjct: 61  EDTTALKQEQETLMDRMKNIKRSLLHEASLDSTGLFASRLRLLFSQED 108

[Close]

BLAST of CmoCh09G000720 vs. NCBI nr
Match: XP_023535555.1 (uncharacterized protein LOC111796960 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 201.8 bits (512), Expect = 2.9e-48
Identity = 107/108 (99.07%), Postives = 108/108 (100.00%), Query Frame = 0


Query: 1   MAPSSPSSSAPEFQMPKKPLSLFANALKRKDSFIQFFAMTGILLLSVRSLGQKYRIHDLQ 60
           MAPSSPSSSAPEFQMPKKPLSLFANALKRKDSFIQFFAMTGILLLSVRSLGQKYRIHDLQ
Sbjct: 1   MAPSSPSSSAPEFQMPKKPLSLFANALKRKDSFIQFFAMTGILLLSVRSLGQKYRIHDLQ 60

Query: 61  EDTTALKQEQETLMDRMKNIKRSLLHEASLDSTGLFASRLRLLFSQED 109
           EDTTALKQEQETL+DRMKNIKRSLLHEASLDSTGLFASRLRLLFSQED
Sbjct: 61  EDTTALKQEQETLIDRMKNIKRSLLHEASLDSTGLFASRLRLLFSQED 108

[Close]

BLAST of CmoCh09G000720 vs. NCBI nr
Match: KAG6591237.1 (hypothetical protein SDJN03_13583, partial [Cucurbita argyrosperma subsp. sororia] >KAG7024121.1 hypothetical protein SDJN02_12934, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 200.7 bits (509), Expect = 6.5e-48
Identity = 106/108 (98.15%), Postives = 108/108 (100.00%), Query Frame = 0


Query: 1   MAPSSPSSSAPEFQMPKKPLSLFANALKRKDSFIQFFAMTGILLLSVRSLGQKYRIHDLQ 60
           MAPSSPSSSAPEFQMPKKPLSLFANALKRKDSFIQFFAMTGILLLSVRSLGQKYRIHDLQ
Sbjct: 1   MAPSSPSSSAPEFQMPKKPLSLFANALKRKDSFIQFFAMTGILLLSVRSLGQKYRIHDLQ 60

Query: 61  EDTTALKQEQETLMDRMKNIKRSLLHEASLDSTGLFASRLRLLFSQED 109
           EDTTALKQEQETL+DRMKNIKRSLLHEASLDSTGLFASRLRLLF+QED
Sbjct: 61  EDTTALKQEQETLIDRMKNIKRSLLHEASLDSTGLFASRLRLLFTQED 108

[Close]

BLAST of CmoCh09G000720 vs. NCBI nr
Match: XP_022975908.1 (uncharacterized protein LOC111476471 [Cucurbita maxima])

HSP 1 Score: 199.1 bits (505), Expect = 1.9e-47
Identity = 105/108 (97.22%), Postives = 108/108 (100.00%), Query Frame = 0


Query: 1   MAPSSPSSSAPEFQMPKKPLSLFANALKRKDSFIQFFAMTGILLLSVRSLGQKYRIHDLQ 60
           MAPSSPSSSAPEFQMPKKPLSLFANALKRKDSFIQFFAM+GILLLSVRSLGQKYRIHDLQ
Sbjct: 1   MAPSSPSSSAPEFQMPKKPLSLFANALKRKDSFIQFFAMSGILLLSVRSLGQKYRIHDLQ 60

Query: 61  EDTTALKQEQETLMDRMKNIKRSLLHEASLDSTGLFASRLRLLFSQED 109
           EDTTALKQEQETL+DRMKNIKRSLLHEASLDSTGLFASRLRLLFSQ+D
Sbjct: 61  EDTTALKQEQETLIDRMKNIKRSLLHEASLDSTGLFASRLRLLFSQDD 108

[Close]

BLAST of CmoCh09G000720 vs. NCBI nr
Match: XP_038897763.1 (uncharacterized protein LOC120085692 [Benincasa hispida])

HSP 1 Score: 193.7 bits (491), Expect = 8.0e-46
Identity = 102/108 (94.44%), Postives = 106/108 (98.15%), Query Frame = 0


Query: 1   MAPSSPSSSAPEFQMPKKPLSLFANALKRKDSFIQFFAMTGILLLSVRSLGQKYRIHDLQ 60
           MAPS+PSSSAPEFQ PKKPLSLFANALKRKDSFIQFFAMTGILLLS RSLGQKYRIHDLQ
Sbjct: 1   MAPSAPSSSAPEFQTPKKPLSLFANALKRKDSFIQFFAMTGILLLSFRSLGQKYRIHDLQ 60

Query: 61  EDTTALKQEQETLMDRMKNIKRSLLHEASLDSTGLFASRLRLLFSQED 109
           EDTTALKQEQETL+DRMKNIKRSLLHEASL+STGLFASRLRLLFS+ED
Sbjct: 61  EDTTALKQEQETLIDRMKNIKRSLLHEASLESTGLFASRLRLLFSEED 108

[Close]

BLAST of CmoCh09G000720 vs. TAIR 10
Match: AT1G20430.1 (unknown protein; Has 29 Blast hits to 29 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 112.8 bits (281), Expect = 1.7e-25
Identity = 65/114 (57.02%), Postives = 79/114 (69.30%), Query Frame = 0


Query: 1   MAPSSPSSSAPEF--QMPKKPLS-----LFANALKRKDSFIQFFAMTGILLLSVRSLGQK 60
           MA S+P  S      + P K L+      F N  K K SF QF AMTGILLLS RS+ QK
Sbjct: 1   MASSAPQGSVDPLTGKDPAKALTAVASGFFENVKKNKQSFFQFAAMTGILLLSFRSVSQK 60

Query: 61  YRIHDLQEDTTALKQEQETLMDRMKNIKRSLLHEASLDSTGLFASRLRLLFSQE 108
           YRIHDL+EDT  LK+EQ++L DRM  IK  LLH+AS+DS+G+FASRLRLLF ++
Sbjct: 61  YRIHDLEEDTAVLKKEQDSLTDRMSKIKSDLLHQASIDSSGVFASRLRLLFGED 114

The following BLAST results are available for this feature:

BLAST of CmoCh09G000720 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh09G000720 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FDG4	4.9e-49	100.00	uncharacterized protein LOC111443106 OS=Cucurbita moschata OX=3662 GN=LOC1114431...	[more]
A0A6J1IKL0	9.2e-48	97.22	uncharacterized protein LOC111476471 OS=Cucurbita maxima OX=3661 GN=LOC111476471...	[more]
A0A6J1CMC7	1.6e-44	90.74	uncharacterized protein LOC111012778 OS=Momordica charantia OX=3673 GN=LOC111012...	[more]
A0A0A0L5S3	8.4e-41	87.04	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G653420 PE=4 SV=1	[more]
A0A1S3BW63	2.3e-38	82.41	uncharacterized protein LOC103493794 OS=Cucumis melo OX=3656 GN=LOC103493794 PE=...	[more]

BLAST of CmoCh09G000720 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022936518.1	1.0e-48	100.00	uncharacterized protein LOC111443106 [Cucurbita moschata]	[more]
XP_023535555.1	2.9e-48	99.07	uncharacterized protein LOC111796960 [Cucurbita pepo subsp. pepo]	[more]
KAG6591237.1	6.5e-48	98.15	hypothetical protein SDJN03_13583, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022975908.1	1.9e-47	97.22	uncharacterized protein LOC111476471 [Cucurbita maxima]	[more]
XP_038897763.1	8.0e-46	94.44	uncharacterized protein LOC120085692 [Benincasa hispida]	[more]

BLAST of CmoCh09G000720 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G20430.1	1.7e-25	57.02	unknown protein; Has 29 Blast hits to 29 proteins in 10 species: Archae - 0; Bac...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 56..76
None	No IPR available	PANTHER	PTHR36316:SF1	OS06G0213900 PROTEIN	coord: 1..107
None	No IPR available	PANTHER	PTHR36316	OS06G0213900 PROTEIN	coord: 1..107

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh09G000720.1	CmoCh09G000720.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane