CmoCh09G000180 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh09G000180
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionUnknown protein
LocationCmo_Chr09: 118593 .. 120361 (+)
RNA-Seq ExpressionCmoCh09G000180
SyntenyCmoCh09G000180
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAACCAGCCACCCAATTCCAGGCCTCCTAATGTAATCAAAATCCAAACGGTGAATAAATTTGGGGTGAGGGCGGGACATTGGGAGAGAGTTGCAGTTGCATGCATGGGATCAAATATGCCCATTTGGGGTTATTATTATTATGGAAGGCGGCACTGTTTCTGCATCTGCCGTCTAGCTCTATTTAATGTAATTCCAATGCCAATGCCCATATATACATGGTTTTGTTTGTGGGTAATTTGGTAGGCTCATGGGTAATTGGCTTTCATTTCCATTCATTGAACGCTATGGATTGAGATTGATTACATAAGGTTAATTGACCAAGTTCCGATGTACCGACACTTCCCACGTGCTCTCAACTCTCTCTGTCACCCAACTTATGTTACTGATACTCACTCTCCCTCGCTTTTAATTTCCACCTCACGTGACCAACGCACCCCTATCAAATGCACTCTAATCCAACCCCAACTCCATCTACATAGAGCTATTTCAGATTTCACTGTGTTAAGATCAAACATATGAAAACAGCTCTATAAATTTGTTTAAAAGTTCGTACTCCATCAAAAAAAAATTTACCTTCAGTGAATGGTAAATAAATAAATAAATAAATAAATGGTGGATGGAGTTTGCAAGGCAATGGTAATAATAATTTGGTAAAATGTAAGAATGAATCAATTTTTTGAATAGCGTGGGGTTAAGGGCATAGTAATCGGGAGCTGCTTTTGCATATCTCTATGGAAAACAGCAAACCCCAAGGGTGAAGCTGGGTGAATACCGGCTTTCCCTTTGTGTGGCGCATCATAATTCATAAACCACTTCCTCCTTCTGCCTTTTCACTTCACTTTCTTCTTCCTCATCTTCACTATTATATTCCGTTCACTTTTCACTTTCTTCGATGCTTCTCTCCATGAACTACACTGATCAAGACTGGATTTAGGTATGCTTCTTCCCTATTTCACTTTACCATTATTTTAGGGTTTTGAAATTGAAGTTGAAGTAATAGTTGTAGCGGTGAATTAGAGGAAAAGGAATGTGTAAGAAAGAGAGATGGTATGTGTGGAGGTTGCGTAATTAAAGGCAGCCGTGTTTTTTTTGGGGGGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTGTTTTTTGGGGGGGGGGGGGGAGTTTAGAGCTGACAAAGGTATTCTGTTGTTGAACAGTACAGAAGAGGTTGCAAGGAGATGGAAAAGATGGGAAGGCGTTTTAATTGAAATCGCTTTCCGAGGTTTGGTAAGTGATAGTGTATGGATCCATCGCCTCCAGGAAATCGTTTCTTCCAGTGTATCGGAGTGGATACCTAATCGACTTGACAAAATTATTCGGTTGTTGTTGTTGGATCCGATGGGTGGGTAG

mRNA sequence

ATGAACCAGCCACCCAATTCCAGGCCTCCTAATACTGGATTTAGTACAGAAGAGGTTGCAAGGAGATGGAAAAGATGGGAAGGCGTTTTAATTGAAATCGCTTTCCGAGGTTTGGTAAGTGATAGTGTATGGATCCATCGCCTCCAGGAAATCGTTTCTTCCAGTGTATCGGAGTGGATACCTAATCGACTTGACAAAATTATTCGGTTGTTGTTGTTGGATCCGATGGGTGGGTAG

Coding sequence (CDS)

ATGAACCAGCCACCCAATTCCAGGCCTCCTAATACTGGATTTAGTACAGAAGAGGTTGCAAGGAGATGGAAAAGATGGGAAGGCGTTTTAATTGAAATCGCTTTCCGAGGTTTGGTAAGTGATAGTGTATGGATCCATCGCCTCCAGGAAATCGTTTCTTCCAGTGTATCGGAGTGGATACCTAATCGACTTGACAAAATTATTCGGTTGTTGTTGTTGGATCCGATGGGTGGGTAG

Protein sequence

MNQPPNSRPPNTGFSTEEVARRWKRWEGVLIEIAFRGLVSDSVWIHRLQEIVSSSVSEWIPNRLDKIIRLLLLDPMGG
Homology
[Close]
BLAST of CmoCh09G000180 vs. NCBI nr
Match: KAG7024079.1 (AT-hook motif nuclear-localized protein 29, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 118.2 bits (295), Expect = 3.1e-23
Identity = 59/64 (92.19%), Postives = 60/64 (93.75%), Query Frame = 0 

Query: 15 STEEVARRWKRWEGVLIEIAFRGLVSDSVWIHRLQEIVSSSVSEWIPNRLDKIIRLLLLD 74
          STEE+ARR KRWEGVLIEI FRGLVSDSVWIHRLQEIVSSSVSEWIPNR DKIIR LLLD
Sbjct: 13 STEELARRRKRWEGVLIEIVFRGLVSDSVWIHRLQEIVSSSVSEWIPNRFDKIIR-LLLD 72

Query: 75 PMGG 79
          PMGG
Sbjct: 73 PMGG 75

The following BLAST results are available for this feature:
BLAST of CmoCh09G000180 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh09G000180 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh09G000180 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7024079.13.1e-2392.19AT-hook motif nuclear-localized protein 29, partial [Cucurbita argyrosperma subs... [more]
BLAST of CmoCh09G000180 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh09G000180.1CmoCh09G000180.1mRNA