CmoCh08G012680 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh08G012680
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	pentatricopeptide repeat-containing protein At3g06430, chloroplastic-like
Location	Cmo_Chr08: 7985725 .. 7987737 (-)
RNA-Seq Expression	CmoCh08G012680
Synteny	CmoCh08G012680

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AATTGGTCTGGTGAATTAATCTATATTTAGAATCCCACTAAATTCATCCACATCACTTCTGGCAGCCGTGGGAAGCTCCATCATCCTTGTTGAATAATGGCAGCCATGGCTTCTTTCTCCTTCTCCTTCTCCTTCTCCTCCTCGCTCCTTCCTTCTTCTGTTTCTATCGATCATGGCTTCGTTTCCTTTTCCCCCATCGTTCCTTCTCCACACTCCAATACTCTCATTGTTCGCTGTGCTTTTGCAGCCCCCGCCAGAAAATCCCCTCCTTCTCCTTCTTCCTCACCTTTTAAGAAGACGCACTGGAAGCAAGGTGAATTTCCAGGCATTACACAGACATCCGCCCCCAAGAAGACTCCTCTCAAAAATGTCAAAAGGAAATTAGACCGCGAGAACCACGCCAAGGCTTGGGCCAATACCGTCACTGAAGCCTTGTCGGACCATATCGCCAACAAACGTTGGCTTCCAGCTCTTGAGGTCGCTTCCCCCTTCTTTAATTTCAACTCTACATACTTGGGGATTTCAGGGAGATTAGTTACATGTTCTGCAAAGTTGAATTGAAAACATGAGCGTTCGTCTTCATGTGCCCTAATTTCAAGGAATGAAGTGTAAATAATTTGATGAGTCTGCATAAACTTCTTGTGCTATTGTTTTCACCTCTAACTATTGTGTTGCTTTAACTCAACCGTTTAGGTGTTTGAAATGCTCCGCGAACAGCCGTTTTATGAACCAAAAGAAGGAACTTACATGAAGCTGATTGTTCTACTTGGAAAATCAGGCCAACCACATCGTGCCCGTCAGATTTTTGACATAATGGTTGAAGAAAGATGTGAAGCTACCTCTGAACTTTACACTGCTTTGATTGCTGCTTATTGTAGGAACAATCTCATTGATGATGCGTTCTCCACTCTGAATCTGATGAAGACCCTCCCTGACTGCCAGCCTGACGTCTACACTTATAGCACCTTGATCAAGGCATGTGTAGATGATTCTCGCTTTGAATTAGTCGAATCCGTGTACGAGGAAATGGTAGAACGACTGATATCTCCAAATACAGTGACCCAGAACATAGTCTTAAGTGGGTATGGCAAGATAGGGAAGTATGAACAGATGGAGAAAGTTCTTTTAGGAATGCTTGAAAGCACAACTTGCAGACCGGATGTGTGGACAATGAATATAATTCTTGGTGTGTTTGGTAATGAGGGGCAGATTGAAATGATGGAAAGATGGTATGAAAAATTTCGCAATTTTGGTATTGAGCCAGAAACTCGTACATTTAATATTTTGATTGGTGCTTATGGGAAGAAAAGGATGTATGATAAAATGTGTTCTGTGATGGAATATATGCGCAAACTGCAGTTTCCTTGGACGACCTCGACATACAACAACGTGATTGAAGCTTTTGCAGACGTGGGAGATGCAACGAGCATGGAGTACACATTTGAGCAGATGCGTGCTGAGGGCATGCGAGCAGACACCAAGACATTCTGTTGCCTTATAAATGGATATGCCAATGCAGGTCTCTTCCATAAGGTAATTAGCTCAGTTAAGTTGGCAGGAAAATACGAGATTCCAGAGAATACCTCATTTTATAATGCAGTTATATATGCGTGTGCTAAGGCTGAAGATCTAATGGAAATGGATAGAGTATTTAAGCGAATGAAAAATAAACACCGTCAGCCAGATACCAAAACATATTCTATTATGATAGAAGCATATGGGAAGCAAGGCATGAATGACAGGGCCCATTACTTGGAAATAGAAAAGAAGCAGGTCATCAATGATGCTCTTGATAACGAGTCATTAGGTGATCGATGATGCCTTGTGGCTTTTGCCCTTAGAAATTTAAACAATACAACGGTTGTTCTGATGAATTTCTTCCAATTAATTAGTTTCTGAACGGATATATAACCGTTTACTTAAAGTCCAGATCTTGCTACTATTTCGTTTACATGTAAAGCACTAGGGATGAGATTGATATCATGTTAGTTATGGTTTACAGCAGAGCTCAGG

mRNA sequence

AATTGGTCTGGTGAATTAATCTATATTTAGAATCCCACTAAATTCATCCACATCACTTCTGGCAGCCGTGGGAAGCTCCATCATCCTTGTTGAATAATGGCAGCCATGGCTTCTTTCTCCTTCTCCTTCTCCTTCTCCTCCTCGCTCCTTCCTTCTTCTGTTTCTATCGATCATGGCTTCGTTTCCTTTTCCCCCATCGTTCCTTCTCCACACTCCAATACTCTCATTGTTCGCTGTGCTTTTGCAGCCCCCGCCAGAAAATCCCCTCCTTCTCCTTCTTCCTCACCTTTTAAGAAGACGCACTGGAAGCAAGGTGAATTTCCAGGCATTACACAGACATCCGCCCCCAAGAAGACTCCTCTCAAAAATGTCAAAAGGAAATTAGACCGCGAGAACCACGCCAAGGCTTGGGCCAATACCGTCACTGAAGCCTTGTCGGACCATATCGCCAACAAACGTTGGCTTCCAGCTCTTGAGGTGTTTGAAATGCTCCGCGAACAGCCGTTTTATGAACCAAAAGAAGGAACTTACATGAAGCTGATTGTTCTACTTGGAAAATCAGGCCAACCACATCGTGCCCGTCAGATTTTTGACATAATGGTTGAAGAAAGATGTGAAGCTACCTCTGAACTTTACACTGCTTTGATTGCTGCTTATTGTAGGAACAATCTCATTGATGATGCGTTCTCCACTCTGAATCTGATGAAGACCCTCCCTGACTGCCAGCCTGACGTCTACACTTATAGCACCTTGATCAAGGCATGTGTAGATGATTCTCGCTTTGAATTAGTCGAATCCGTGTACGAGGAAATGGTAGAACGACTGATATCTCCAAATACAGTGACCCAGAACATAGTCTTAAGTGGGTATGGCAAGATAGGGAAGTATGAACAGATGGAGAAAGTTCTTTTAGGAATGCTTGAAAGCACAACTTGCAGACCGGATGTGTGGACAATGAATATAATTCTTGGTGTGTTTGGTAATGAGGGGCAGATTGAAATGATGGAAAGATGGTATGAAAAATTTCGCAATTTTGGTATTGAGCCAGAAACTCGTACATTTAATATTTTGATTGGTGCTTATGGGAAGAAAAGGATGTATGATAAAATGTGTTCTGTGATGGAATATATGCGCAAACTGCAGTTTCCTTGGACGACCTCGACATACAACAACGTGATTGAAGCTTTTGCAGACGTGGGAGATGCAACGAGCATGGAGTACACATTTGAGCAGATGCGTGCTGAGGGCATGCGAGCAGACACCAAGACATTCTGTTGCCTTATAAATGGATATGCCAATGCAGGTCTCTTCCATAAGGTAATTAGCTCAGTTAAGTTGGCAGGAAAATACGAGATTCCAGAGAATACCTCATTTTATAATGCAGTTATATATGCGTGTGCTAAGGCTGAAGATCTAATGGAAATGGATAGAGTATTTAAGCGAATGAAAAATAAACACCGTCAGCCAGATACCAAAACATATTCTATTATGATAGAAGCATATGGGAAGCAAGGCATGAATGACAGGGCCCATTACTTGGAAATAGAAAAGAAGCAGGTCATCAATGATGCTCTTGATAACGAGTCATTAGGTGATCGATGATGCCTTGTGGCTTTTGCCCTTAGAAATTTAAACAATACAACGGTTGTTCTGATGAATTTCTTCCAATTAATTAGTTTCTGAACGGATATATAACCGTTTACTTAAAGTCCAGATCTTGCTACTATTTCGTTTACATGTAAAGCACTAGGGATGAGATTGATATCATGTTAGTTATGGTTTACAGCAGAGCTCAGG

Coding sequence (CDS)

ATGGCAGCCATGGCTTCTTTCTCCTTCTCCTTCTCCTTCTCCTCCTCGCTCCTTCCTTCTTCTGTTTCTATCGATCATGGCTTCGTTTCCTTTTCCCCCATCGTTCCTTCTCCACACTCCAATACTCTCATTGTTCGCTGTGCTTTTGCAGCCCCCGCCAGAAAATCCCCTCCTTCTCCTTCTTCCTCACCTTTTAAGAAGACGCACTGGAAGCAAGGTGAATTTCCAGGCATTACACAGACATCCGCCCCCAAGAAGACTCCTCTCAAAAATGTCAAAAGGAAATTAGACCGCGAGAACCACGCCAAGGCTTGGGCCAATACCGTCACTGAAGCCTTGTCGGACCATATCGCCAACAAACGTTGGCTTCCAGCTCTTGAGGTGTTTGAAATGCTCCGCGAACAGCCGTTTTATGAACCAAAAGAAGGAACTTACATGAAGCTGATTGTTCTACTTGGAAAATCAGGCCAACCACATCGTGCCCGTCAGATTTTTGACATAATGGTTGAAGAAAGATGTGAAGCTACCTCTGAACTTTACACTGCTTTGATTGCTGCTTATTGTAGGAACAATCTCATTGATGATGCGTTCTCCACTCTGAATCTGATGAAGACCCTCCCTGACTGCCAGCCTGACGTCTACACTTATAGCACCTTGATCAAGGCATGTGTAGATGATTCTCGCTTTGAATTAGTCGAATCCGTGTACGAGGAAATGGTAGAACGACTGATATCTCCAAATACAGTGACCCAGAACATAGTCTTAAGTGGGTATGGCAAGATAGGGAAGTATGAACAGATGGAGAAAGTTCTTTTAGGAATGCTTGAAAGCACAACTTGCAGACCGGATGTGTGGACAATGAATATAATTCTTGGTGTGTTTGGTAATGAGGGGCAGATTGAAATGATGGAAAGATGGTATGAAAAATTTCGCAATTTTGGTATTGAGCCAGAAACTCGTACATTTAATATTTTGATTGGTGCTTATGGGAAGAAAAGGATGTATGATAAAATGTGTTCTGTGATGGAATATATGCGCAAACTGCAGTTTCCTTGGACGACCTCGACATACAACAACGTGATTGAAGCTTTTGCAGACGTGGGAGATGCAACGAGCATGGAGTACACATTTGAGCAGATGCGTGCTGAGGGCATGCGAGCAGACACCAAGACATTCTGTTGCCTTATAAATGGATATGCCAATGCAGGTCTCTTCCATAAGGTAATTAGCTCAGTTAAGTTGGCAGGAAAATACGAGATTCCAGAGAATACCTCATTTTATAATGCAGTTATATATGCGTGTGCTAAGGCTGAAGATCTAATGGAAATGGATAGAGTATTTAAGCGAATGAAAAATAAACACCGTCAGCCAGATACCAAAACATATTCTATTATGATAGAAGCATATGGGAAGCAAGGCATGAATGACAGGGCCCATTACTTGGAAATAGAAAAGAAGCAGGTCATCAATGATGCTCTTGATAACGAGTCATTAGGTGATCGATGA

Protein sequence

MAAMASFSFSFSFSSSLLPSSVSIDHGFVSFSPIVPSPHSNTLIVRCAFAAPARKSPPSPSSSPFKKTHWKQGEFPGITQTSAPKKTPLKNVKRKLDRENHAKAWANTVTEALSDHIANKRWLPALEVFEMLREQPFYEPKEGTYMKLIVLLGKSGQPHRARQIFDIMVEERCEATSELYTALIAAYCRNNLIDDAFSTLNLMKTLPDCQPDVYTYSTLIKACVDDSRFELVESVYEEMVERLISPNTVTQNIVLSGYGKIGKYEQMEKVLLGMLESTTCRPDVWTMNIILGVFGNEGQIEMMERWYEKFRNFGIEPETRTFNILIGAYGKKRMYDKMCSVMEYMRKLQFPWTTSTYNNVIEAFADVGDATSMEYTFEQMRAEGMRADTKTFCCLINGYANAGLFHKVISSVKLAGKYEIPENTSFYNAVIYACAKAEDLMEMDRVFKRMKNKHRQPDTKTYSIMIEAYGKQGMNDRAHYLEIEKKQVINDALDNESLGDR

Homology

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BLAST of CmoCh08G012680 vs. ExPASy Swiss-Prot
Match: Q9SQU6 (Pentatricopeptide repeat-containing protein At3g06430, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=EMB2750 PE=1 SV=1)

HSP 1 Score: 663.7 bits (1711), Expect = 1.7e-189
Identity = 333/483 (68.94%), Postives = 400/483 (82.82%), Query Frame = 0


Query: 8   SFSFSFSSSLLPSSVSIDHGFVSFSPIVPSPHSNTLIVRCAFAAPARKSPPSPSSSPFKK 67
           S S SFSSSL  S   I  G   F       H +  IVRC  AA ++ SP S +    KK
Sbjct: 3   SMSLSFSSSLCSS--RIPEGKRRFR------HRDVGIVRCVLAA-SKSSPGSVT----KK 62

Query: 68  THWKQGEFPGITQTSAPKKTPLKNVKRKLDRENHAKAWANTVTEALSDHIANKRWLPALE 127
             WK GEFPGIT+    ++TP+KNVK+KLDR + A  W NTVTE LSD IA K+WL ALE
Sbjct: 63  RLWKDGEFPGITEPVNQRRTPIKNVKKKLDRRSKANGWVNTVTETLSDLIAKKQWLQALE 122

Query: 128 VFEMLREQPFYEPKEGTYMKLIVLLGKSGQPHRARQIFDIMVEERCEATSELYTALIAAY 187
           VF+MLREQ FY+PKEGTYMKL+VLLGKSGQP+RA+++FD M+EE  E T ELYTAL+AAY
Sbjct: 123 VFDMLREQTFYQPKEGTYMKLLVLLGKSGQPNRAQKLFDEMLEEGLEPTVELYTALLAAY 182

Query: 188 CRNNLIDDAFSTLNLMKTLPDCQPDVYTYSTLIKACVDDSRFELVESVYEEMVERLISPN 247
            R+NLIDDAFS L+ MK+ P CQPDV+TYSTL+KACVD S+F+LV+S+Y+EM ERLI+PN
Sbjct: 183 TRSNLIDDAFSILDKMKSFPQCQPDVFTYSTLLKACVDASQFDLVDSLYKEMDERLITPN 242

Query: 248 TVTQNIVLSGYGKIGKYEQMEKVLLGMLESTTCRPDVWTMNIILGVFGNEGQIEMMERWY 307
           TVTQNIVLSGYG++G+++QMEKVL  ML ST C+PDVWTMNIIL VFGN G+I+MME WY
Sbjct: 243 TVTQNIVLSGYGRVGRFDQMEKVLSDMLVSTACKPDVWTMNIILSVFGNMGKIDMMESWY 302

Query: 308 EKFRNFGIEPETRTFNILIGAYGKKRMYDKMCSVMEYMRKLQFPWTTSTYNNVIEAFADV 367
           EKFRNFGIEPETRTFNILIG+YGKKRMYDKM SVMEYMRKL+FPWTTSTYNN+IEAFADV
Sbjct: 303 EKFRNFGIEPETRTFNILIGSYGKKRMYDKMSSVMEYMRKLEFPWTTSTYNNIIEAFADV 362

Query: 368 GDATSMEYTFEQMRAEGMRADTKTFCCLINGYANAGLFHKVISSVKLAGKYEIPENTSFY 427
           GDA +ME TF+QMR+EGM+ADTKTFCCLINGYANAGLFHKVISSV+LA K+EIPENT+FY
Sbjct: 363 GDAKNMELTFDQMRSEGMKADTKTFCCLINGYANAGLFHKVISSVQLAAKFEIPENTAFY 422

Query: 428 NAVIYACAKAEDLMEMDRVFKRMKNKHRQPDTKTYSIMIEAYGKQGMNDRAHYLEIEKKQ 487
           NAVI ACAKA+DL+EM+RV+ RMK +    D++T+ IM+EAY K+GMND+ +YLE E+++
Sbjct: 423 NAVISACAKADDLIEMERVYIRMKERQCVCDSRTFEIMVEAYEKEGMNDKIYYLEQERQK 472

Query: 488 VIN 491
           +++
Sbjct: 483 LMD 472

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BLAST of CmoCh08G012680 vs. ExPASy Swiss-Prot
Match: Q9SCP4 (Pentatricopeptide repeat-containing protein At3g53170 OS=Arabidopsis thaliana OX=3702 GN=At3g53170 PE=3 SV=1)

HSP 1 Score: 324.7 bits (831), Expect = 1.8e-87
Identity = 162/402 (40.30%), Postives = 249/402 (61.94%), Query Frame = 0


Query: 89  LKNVKRKLDRENHAKAWANTVTEALSDHIANKRWLPALEVFEMLREQPFYEPKEGTYMKL 148
           +K ++RK + E +   W   V EAL + I   RW  AL++F +LR+Q +YEP+  TY KL
Sbjct: 41  VKGIERKANSEKYLTLWPKAVLEALDEAIKENRWQSALKIFNLLRKQHWYEPRCKTYTKL 100

Query: 149 IVLLGKSGQPHRARQIFDIMVEERCEATSELYTALIAAYCRNNLIDDAFSTLNLMKTLPD 208
             +LG   QP +A  +F++M+ E  + T ++YT+LI+ Y ++ L+D AFSTL  MK++ D
Sbjct: 101 FKVLGNCKQPDQASLLFEVMLSEGLKPTIDVYTSLISVYGKSELLDKAFSTLEYMKSVSD 160

Query: 209 CQPDVYTYSTLIKACVDDSRFELVESVYEEMVERLISPNTVTQNIVLSGYGKIGKYEQME 268
           C+PDV+T++ LI  C    RF+LV+S+  EM    +  +TVT N ++ GYGK G +E+ME
Sbjct: 161 CKPDVFTFTVLISCCCKLGRFDLVKSIVLEMSYLGVGCSTVTYNTIIDGYGKAGMFEEME 220

Query: 269 KVLLGMLESTTCRPDVWTMNIILGVFGNEGQIEMMERWYEKFRNFGIEPETRTFNILIGA 328
            VL  M+E     PDV T+N I+G +GN   +  ME WY +F+  G++P+  TFNILI +
Sbjct: 221 SVLADMIEDGDSLPDVCTLNSIIGSYGNGRNMRKMESWYSRFQLMGVQPDITTFNILILS 280

Query: 329 YGKKRMYDKMCSVMEYMRKLQFPWTTSTYNNVIEAFADVGDATSMEYTFEQMRAEGMRAD 388
           +GK  MY KMCSVM++M K  F  TT TYN VIE F   G    M+  F +M+ +G++ +
Sbjct: 281 FGKAGMYKKMCSVMDFMEKRFFSLTTVTYNIVIETFGKAGRIEKMDDVFRKMKYQGVKPN 340

Query: 389 TKTFCCLINGYANAGLFHKVISSVKLAGKYEIPENTSFYNAVIYACAKAEDLMEMDRVFK 448
           + T+C L+N Y+ AGL  K+ S ++     ++  +T F+N +I A  +A DL  M  ++ 
Sbjct: 341 SITYCSLVNAYSKAGLVVKIDSVLRQIVNSDVVLDTPFFNCIINAYGQAGDLATMKELYI 400

Query: 449 RMKNKHRQPDTKTYSIMIEAYGKQGMNDRAHYLEIEKKQVIN 491
           +M+ +  +PD  T++ MI+ Y   G+ D    LE   KQ+I+
Sbjct: 401 QMEERKCKPDKITFATMIKTYTAHGIFDAVQELE---KQMIS 439

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BLAST of CmoCh08G012680 vs. ExPASy Swiss-Prot
Match: Q9FKC3 (Pentatricopeptide repeat-containing protein At5g48730, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At5g48730 PE=2 SV=2)

HSP 1 Score: 317.0 bits (811), Expect = 3.8e-85
Identity = 161/377 (42.71%), Postives = 224/377 (59.42%), Query Frame = 0


Query: 98  RENHAKAWANTVTEALSDHIANKRWLPALEVFEMLREQPFYEPKEGTYMKLIVLLGKSGQ 157
           ++   K    TV E+L + I   RW  A++VFE+LREQ +Y+P  G Y+KLIV+LGK  Q
Sbjct: 106 KKGSKKLLPRTVLESLHERITALRWESAIQVFELLREQLWYKPNVGIYVKLIVMLGKCKQ 165

Query: 158 PHRARQIFDIMVEERCEATSELYTALIAAYCRNNLIDDAFSTLNLMKTLPDCQPDVYTYS 217
           P +A ++F  M+ E C    E+YTAL++AY R+   D AF+ L  MK+  +CQPDV+TYS
Sbjct: 166 PEKAHELFQEMINEGCVVNHEVYTALVSAYSRSGRFDAAFTLLERMKSSHNCQPDVHTYS 225

Query: 218 TLIKACVDDSRFELVESVYEEMVERLISPNTVTQNIVLSGYGKIGKYEQMEKVLLGMLES 277
            LIK+ +    F+ V+ +  +M  + I PNT+T N ++  YGK   + +ME  L+ ML  
Sbjct: 226 ILIKSFLQVFAFDKVQDLLSDMRRQGIRPNTITYNTLIDAYGKAKMFVEMESTLIQMLGE 285

Query: 278 TTCRPDVWTMNIILGVFGNEGQIEMMERWYEKFRNFGIEPETRTFNILIGAYGKKRMYDK 337
             C+PD WTMN  L  FG  GQIEMME  YEKF++ GIEP  RTFNIL+ +YGK   Y K
Sbjct: 286 DDCKPDSWTMNSTLRAFGGNGQIEMMENCYEKFQSSGIEPNIRTFNILLDSYGKSGNYKK 345

Query: 338 MCSVMEYMRKLQFPWTTSTYNNVIEAFADVGDATSMEYTFEQMRAEGMRADTKTFCCLIN 397
           M +VMEYM+K  + WT  TYN VI+AF   GD   MEY F  M++E +     T C L+ 
Sbjct: 346 MSAVMEYMQKYHYSWTIVTYNVVIDAFGRAGDLKQMEYLFRLMQSERIFPSCVTLCSLVR 405

Query: 398 GYANAGLFHKVISSVKLAGKYEIPENTSFYNAVIYACAKAEDLMEMDRVFKRMKNKHRQP 457
            Y  A    K+   ++     +I  +  F+N ++ A  + E   EM  V + M+ K  +P
Sbjct: 406 AYGRASKADKIGGVLRFIENSDIRLDLVFFNCLVDAYGRMEKFAEMKGVLELMEKKGFKP 465

Query: 458 DTKTYSIMIEAYGKQGM 475
           D  TY  M++AY   GM
Sbjct: 466 DKITYRTMVKAYRISGM 482

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BLAST of CmoCh08G012680 vs. ExPASy Swiss-Prot
Match: Q9SV96 (Pentatricopeptide repeat-containing protein At4g39620, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=EMB2453 PE=2 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 1.7e-40
Identity = 106/393 (26.97%), Postives = 183/393 (46.56%), Query Frame = 0


Query: 92  VKRKLDRENHAKAWANTVTEALSDHI--------ANKRWLPALEVFEMLREQPFYEPKEG 151
           + R  DRE   K     V     DH          + +WL  LEVF  +++Q +Y P  G
Sbjct: 75  MSRISDREPLVKTLDKYVKVVRCDHCFLLFEELGKSDKWLQCLEVFRWMQKQRWYIPDNG 134

Query: 152 TYMKLIVLLGKSGQPHRARQIFDIMVEERCEATSELYTALIAAYC----RNNLIDDAFST 211
            Y KLI ++GK GQ   A  +F  M    C   + +Y ALI A+     +   ++     
Sbjct: 135 VYSKLISVMGKKGQTRMAMWLFSEMKNSGCRPDASVYNALITAHLHTRDKAKALEKVRGY 194

Query: 212 LNLMKTLPDCQPDVYTYSTLIKACVDDSRFELVESVYEEMVERLISPNTVTQNIVLSGYG 271
           L+ MK +  CQP+V TY+ L++A     + + V ++++++    +SP+  T N V+  YG
Sbjct: 195 LDKMKGIERCQPNVVTYNILLRAFAQSGKVDQVNALFKDLDMSPVSPDVYTFNGVMDAYG 254

Query: 272 KIGKYEQMEKVLLGMLESTTCRPDVWTMNIILGVFGNEGQIEMMERWYEKFRNFGIEPET 331
           K G  ++ME VL  M  S  C+PD+ T N+++  +G + + E ME+ ++       +P  
Sbjct: 255 KNGMIKEMEAVLTRM-RSNECKPDIITFNVLIDSYGKKQEFEKMEQTFKSLMRSKEKPTL 314

Query: 332 RTFNILIGAYGKKRMYDKMCSVMEYMRKLQFPWTTSTYNNVIEAFADVGDATSMEYTFEQ 391
            TFN +I  YGK RM DK   V + M  + +  +  TY  +I  +   G  +     FE+
Sbjct: 315 PTFNSMIINYGKARMIDKAEWVFKKMNDMNYIPSFITYECMIMMYGYCGSVSRAREIFEE 374

Query: 392 MRAEGMRADTKTFCCLINGYANAGLFHKVISSVKLAGKYEIPENTSFYNAVIYACAKAED 451
           +          T   ++  Y   GL+ +       A  + +  + S Y  +  A  KA+ 
Sbjct: 375 VGESDRVLKASTLNAMLEVYCRNGLYIEADKLFHNASAFRVHPDASTYKFLYKAYTKADM 434

Query: 452 LMEMDRVFKRMKNKHRQPDTKTYSIMIEAYGKQ 473
             ++  + K+M+     P+ + +   +E +G +
Sbjct: 435 KEQVQILMKKMEKDGIVPNKRFFLEALEVFGSR 466

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BLAST of CmoCh08G012680 vs. ExPASy Swiss-Prot
Match: A7LN87 (Pentatricopeptide repeat-containing protein PPR5, chloroplastic OS=Zea mays OX=4577 GN=PPR5 PE=2 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 1.7e-40
Identity = 102/360 (28.33%), Postives = 175/360 (48.61%), Query Frame = 0


Query: 122 WLPALEVFEMLREQPFYEPKEGTYMKLIVLLGKSGQPHRARQIFDIMVEERCEATSELYT 181
           WL  L+VF  +++Q +Y    G Y KLI ++G+ GQ   A  +F  M    C+  + +Y 
Sbjct: 104 WLQCLDVFRWMQKQRWYVADNGIYSKLISVMGRKGQIRMAMWLFSQMRNSGCKPDTSVYN 163

Query: 182 ALIAAYC----RNNLIDDAFSTLNLMKTLPDCQPDVYTYSTLIKACVDDSRFELVESVYE 241
           +LI A+     +   +  A      MK +  CQP + TY+ L++A       + V+ +++
Sbjct: 164 SLIGAHLHSRDKTKALAKALGYFEKMKCIERCQPTIVTYNILLRAFAQAGDTKQVDMLFK 223

Query: 242 EMVERLISPNTVTQNIVLSGYGKIGKYEQMEKVLLGMLESTTCRPDVWTMNIILGVFGNE 301
           ++ E ++SP+  T N VL  YGK G  ++ME VL+ M +ST CRPDV T NI++  +G +
Sbjct: 224 DLDESVVSPDVYTYNGVLDAYGKNGMIKEMESVLVRM-KSTQCRPDVITFNILIDSYGRK 283

Query: 302 GQIEMMERWYEKFRNFGIEPETRTFNILIGAYGKKRMYDKMCSVMEYMRKLQFPWTTSTY 361
              + ME+ ++        P   TFN +I  YG+ R+ +K  SV+E M +L F     T 
Sbjct: 284 QTFDKMEQVFKSLLRSKERPTHPTFNSMITNYGRARLREKAESVVEKMEELGFKPNYVTQ 343

Query: 362 NNVIEAFADVGDATSMEYTFEQMRAEGMRADTKTFCCLINGYANAGLFHKVISSVKLAGK 421
             +I  +A     +     F+++     +    +   ++  Y   GL  +    +  A +
Sbjct: 344 ECLIIMYAHCDCVSKARQVFDELVTSQTKVHLSSLNSMLEAYCMNGLHTEADRLLDTALQ 403

Query: 422 YEIPENTSFYNAVIYACAKAEDLMEMDRVFKRMKNKHRQPDTKTYSIMIEAYGKQGMNDR 478
             +  N S Y  +  A  KA D + + ++ KRM  +   P+ K +   +EA+G      R
Sbjct: 404 QCVVPNGSTYKLLYKAYTKANDKLLVQKLLKRMNKQGIVPNKKFFLDALEAFGTSDRKPR 462

[Close]

BLAST of CmoCh08G012680 vs. ExPASy TrEMBL
Match: A0A6J1EVC0 (pentatricopeptide repeat-containing protein At3g06430, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111436928 PE=4 SV=1)

HSP 1 Score: 1009.2 bits (2608), Expect = 5.9e-291
Identity = 501/501 (100.00%), Postives = 501/501 (100.00%), Query Frame = 0


Query: 1   MAAMASFSFSFSFSSSLLPSSVSIDHGFVSFSPIVPSPHSNTLIVRCAFAAPARKSPPSP 60
           MAAMASFSFSFSFSSSLLPSSVSIDHGFVSFSPIVPSPHSNTLIVRCAFAAPARKSPPSP
Sbjct: 1   MAAMASFSFSFSFSSSLLPSSVSIDHGFVSFSPIVPSPHSNTLIVRCAFAAPARKSPPSP 60

Query: 61  SSSPFKKTHWKQGEFPGITQTSAPKKTPLKNVKRKLDRENHAKAWANTVTEALSDHIANK 120
           SSSPFKKTHWKQGEFPGITQTSAPKKTPLKNVKRKLDRENHAKAWANTVTEALSDHIANK
Sbjct: 61  SSSPFKKTHWKQGEFPGITQTSAPKKTPLKNVKRKLDRENHAKAWANTVTEALSDHIANK 120

Query: 121 RWLPALEVFEMLREQPFYEPKEGTYMKLIVLLGKSGQPHRARQIFDIMVEERCEATSELY 180
           RWLPALEVFEMLREQPFYEPKEGTYMKLIVLLGKSGQPHRARQIFDIMVEERCEATSELY
Sbjct: 121 RWLPALEVFEMLREQPFYEPKEGTYMKLIVLLGKSGQPHRARQIFDIMVEERCEATSELY 180

Query: 181 TALIAAYCRNNLIDDAFSTLNLMKTLPDCQPDVYTYSTLIKACVDDSRFELVESVYEEMV 240
           TALIAAYCRNNLIDDAFSTLNLMKTLPDCQPDVYTYSTLIKACVDDSRFELVESVYEEMV
Sbjct: 181 TALIAAYCRNNLIDDAFSTLNLMKTLPDCQPDVYTYSTLIKACVDDSRFELVESVYEEMV 240

Query: 241 ERLISPNTVTQNIVLSGYGKIGKYEQMEKVLLGMLESTTCRPDVWTMNIILGVFGNEGQI 300
           ERLISPNTVTQNIVLSGYGKIGKYEQMEKVLLGMLESTTCRPDVWTMNIILGVFGNEGQI
Sbjct: 241 ERLISPNTVTQNIVLSGYGKIGKYEQMEKVLLGMLESTTCRPDVWTMNIILGVFGNEGQI 300

Query: 301 EMMERWYEKFRNFGIEPETRTFNILIGAYGKKRMYDKMCSVMEYMRKLQFPWTTSTYNNV 360
           EMMERWYEKFRNFGIEPETRTFNILIGAYGKKRMYDKMCSVMEYMRKLQFPWTTSTYNNV
Sbjct: 301 EMMERWYEKFRNFGIEPETRTFNILIGAYGKKRMYDKMCSVMEYMRKLQFPWTTSTYNNV 360

Query: 361 IEAFADVGDATSMEYTFEQMRAEGMRADTKTFCCLINGYANAGLFHKVISSVKLAGKYEI 420
           IEAFADVGDATSMEYTFEQMRAEGMRADTKTFCCLINGYANAGLFHKVISSVKLAGKYEI
Sbjct: 361 IEAFADVGDATSMEYTFEQMRAEGMRADTKTFCCLINGYANAGLFHKVISSVKLAGKYEI 420

Query: 421 PENTSFYNAVIYACAKAEDLMEMDRVFKRMKNKHRQPDTKTYSIMIEAYGKQGMNDRAHY 480
           PENTSFYNAVIYACAKAEDLMEMDRVFKRMKNKHRQPDTKTYSIMIEAYGKQGMNDRAHY
Sbjct: 421 PENTSFYNAVIYACAKAEDLMEMDRVFKRMKNKHRQPDTKTYSIMIEAYGKQGMNDRAHY 480

Query: 481 LEIEKKQVINDALDNESLGDR 502
           LEIEKKQVINDALDNESLGDR
Sbjct: 481 LEIEKKQVINDALDNESLGDR 501

[Close]

BLAST of CmoCh08G012680 vs. ExPASy TrEMBL
Match: A0A6J1KKQ9 (pentatricopeptide repeat-containing protein At3g06430, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111494156 PE=4 SV=1)

HSP 1 Score: 937.6 bits (2422), Expect = 2.2e-269
Identity = 470/498 (94.38%), Postives = 478/498 (95.98%), Query Frame = 0


Query: 1   MAAMASFSFSFSFSSSLLPSSVSIDHGFVSFSPIV----PSPHSNTLIVRCAFAAPARKS 60
           MAAMA    S+SFSSSLLPSSVSIDHGFVSFSPI     PSPHSNTLIVRCAFAAPAR+S
Sbjct: 1   MAAMA----SYSFSSSLLPSSVSIDHGFVSFSPIFPSPSPSPHSNTLIVRCAFAAPARRS 60

Query: 61  PPSPS-SSPFKKTHWKQGEFPGITQTSAPKKTPLKNVKRKLDRENHAKAWANTVTEALSD 120
           PP P  SSPFKK  WKQGEFPGITQTSAPKKTPLKNVK+KLDRENHAKAWANTVTEALSD
Sbjct: 61  PPPPPFSSPFKKRQWKQGEFPGITQTSAPKKTPLKNVKKKLDRENHAKAWANTVTEALSD 120

Query: 121 HIANKRWLPALEVFEMLREQPFYEPKEGTYMKLIVLLGKSGQPHRARQIFDIMVEERCEA 180
           HIANKRWLPALEVFEMLREQPFYEPKEGTYMKLIVLLG+SGQPHRARQIFDIM EERCE 
Sbjct: 121 HIANKRWLPALEVFEMLREQPFYEPKEGTYMKLIVLLGRSGQPHRARQIFDIMFEERCEP 180

Query: 181 TSELYTALIAAYCRNNLIDDAFSTLNLMKTLPDCQPDVYTYSTLIKACVDDSRFELVESV 240
           TSELYTALIAAYCRNNLIDDAFSTLNLMKTLP CQPDVYTYSTLIKACVD+SRFELVES+
Sbjct: 181 TSELYTALIAAYCRNNLIDDAFSTLNLMKTLPGCQPDVYTYSTLIKACVDESRFELVESL 240

Query: 241 YEEMVERLISPNTVTQNIVLSGYGKIGKYEQMEKVLLGMLESTTCRPDVWTMNIILGVFG 300
           YEEM ERLISPNTVTQNIVLSGYGKIGKYEQMEKVLLGMLESTTCRPDVWTMNIILGVFG
Sbjct: 241 YEEMAERLISPNTVTQNIVLSGYGKIGKYEQMEKVLLGMLESTTCRPDVWTMNIILGVFG 300

Query: 301 NEGQIEMMERWYEKFRNFGIEPETRTFNILIGAYGKKRMYDKMCSVMEYMRKLQFPWTTS 360
           NEGQIEMMERWYEKFRNFGIEPETRTFNILIGAYGKKRMYDKMCSVMEYMRKLQFPWTTS
Sbjct: 301 NEGQIEMMERWYEKFRNFGIEPETRTFNILIGAYGKKRMYDKMCSVMEYMRKLQFPWTTS 360

Query: 361 TYNNVIEAFADVGDATSMEYTFEQMRAEGMRADTKTFCCLINGYANAGLFHKVISSVKLA 420
           TYNNVIEAFADVGDATSMEYTFEQMRAEGMRADTKTFCCLINGYANAGLFHKVISSVKLA
Sbjct: 361 TYNNVIEAFADVGDATSMEYTFEQMRAEGMRADTKTFCCLINGYANAGLFHKVISSVKLA 420

Query: 421 GKYEIPENTSFYNAVIYACAKAEDLMEMDRVFKRMKNKHRQPDTKTYSIMIEAYGKQGMN 480
           GKYEIPENTSFYNAVIYACAKAEDLMEMDRVFKRMKNKHRQPD KTYSIMIEAYGKQGMN
Sbjct: 421 GKYEIPENTSFYNAVIYACAKAEDLMEMDRVFKRMKNKHRQPDIKTYSIMIEAYGKQGMN 480

Query: 481 DRAHYLEIEKKQVINDAL 494
           DR HY+EIEKKQVI+DAL
Sbjct: 481 DRVHYVEIEKKQVIDDAL 494

[Close]

BLAST of CmoCh08G012680 vs. ExPASy TrEMBL
Match: A0A1S3C7L9 (pentatricopeptide repeat-containing protein At3g06430, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103497754 PE=4 SV=1)

HSP 1 Score: 848.6 bits (2191), Expect = 1.3e-242
Identity = 423/495 (85.45%), Postives = 453/495 (91.52%), Query Frame = 0


Query: 10  SFSFSSSLLPSSVSIDHG-------FVSFSPIVPSPHSNTLIVRCAFAAPARKSP-PSPS 69
           SFSFSSSLLPSSVS DH        FVS S    S H N+ IVRCAFAAP RKSP PS S
Sbjct: 3   SFSFSSSLLPSSVSFDHVSTFLFPIFVSSSSSSSSSHPNSRIVRCAFAAPTRKSPVPSTS 62

Query: 70  SSPFKKTHWKQGEFPGITQTSAPKKTPLKNVKRKLDRENHAKAWANTVTEALSDHIANKR 129
           SSP KK HWKQGEFPGIT+T   +KTPLKNVK+KLDR+N+AKAWANTVTEALSDHI+NKR
Sbjct: 63  SSPAKKRHWKQGEFPGITETPTRRKTPLKNVKKKLDRKNNAKAWANTVTEALSDHISNKR 122

Query: 130 WLPALEVFEMLREQPFYEPKEGTYMKLIVLLGKSGQPHRARQIFDIMVEERCEATSELYT 189
           WL ALEVFEMLREQPFYEPKEGTYMKL+VLLG+SGQPHRAR +FD M++ERCE TSELYT
Sbjct: 123 WLEALEVFEMLREQPFYEPKEGTYMKLLVLLGRSGQPHRARLLFDTMLQERCEPTSELYT 182

Query: 190 ALIAAYCRNNLIDDAFSTLNLMKTLPDCQPDVYTYSTLIKACVDDSRFELVESVYEEMVE 249
           AL+AAYCRNNLIDDAFSTLNLMKTLP CQPDVYTYS LIKACVD SRFE+VES+YEEM +
Sbjct: 183 ALLAAYCRNNLIDDAFSTLNLMKTLPGCQPDVYTYSILIKACVDASRFEIVESLYEEMAQ 242

Query: 250 RLISPNTVTQNIVLSGYGKIGKYEQMEKVLLGMLESTTCRPDVWTMNIILGVFGNEGQIE 309
           RLI+PNTVTQNIVLSGYGKIGKY+QMEKVL+GMLESTTCRPDVWTMNIIL VFGN+GQIE
Sbjct: 243 RLITPNTVTQNIVLSGYGKIGKYDQMEKVLIGMLESTTCRPDVWTMNIILSVFGNKGQIE 302

Query: 310 MMERWYEKFRNFGIEPETRTFNILIGAYGKKRMYDKMCSVMEYMRKLQFPWTTSTYNNVI 369
           MMERWYEKFRNFGIEPETRTFNILIGAYGKKRMYDKM SVMEYMRKLQFPWTTSTYNNVI
Sbjct: 303 MMERWYEKFRNFGIEPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTTSTYNNVI 362

Query: 370 EAFADVGDATSMEYTFEQMRAEGMRADTKTFCCLINGYANAGLFHKVISSVKLAGKYEIP 429
           EAFADVGDA +MEYTFEQMRAEGMRADTKTFCCLINGYANAGLFHKVISSVKLAGK EIP
Sbjct: 363 EAFADVGDAKNMEYTFEQMRAEGMRADTKTFCCLINGYANAGLFHKVISSVKLAGKLEIP 422

Query: 430 ENTSFYNAVIYACAKAEDLMEMDRVFKRMKNKHRQPDTKTYSIMIEAYGKQGMNDRAHYL 489
           ENTSFYNAVI ACAKAEDLMEMDRVFKRMK+KH QPD+KTY+IM+EAYGK+GMNDR HYL
Sbjct: 423 ENTSFYNAVISACAKAEDLMEMDRVFKRMKDKHCQPDSKTYNIMMEAYGKEGMNDRVHYL 482

Query: 490 EIEKKQVINDALDNE 497
           E+EKK+VI+ A +NE
Sbjct: 483 ELEKKEVIDYASNNE 497

[Close]

BLAST of CmoCh08G012680 vs. ExPASy TrEMBL
Match: A0A0A0K7C8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G000680 PE=4 SV=1)

HSP 1 Score: 843.6 bits (2178), Expect = 4.3e-241
Identity = 420/494 (85.02%), Postives = 446/494 (90.28%), Query Frame = 0


Query: 10  SFSFSSSLLPSSVSIDHGFVSFSPIV------PSPHSNTLIVRCAFAAPARKSP-PSPSS 69
           SFSFSSSLLPSSVS DH      PI        S H N+ IVRCAFAAP RKSP PS SS
Sbjct: 3   SFSFSSSLLPSSVSFDHVSTFLFPIFVSSSCSSSSHPNSRIVRCAFAAPTRKSPVPSTSS 62

Query: 70  SPFKKTHWKQGEFPGITQTSAPKKTPLKNVKRKLDRENHAKAWANTVTEALSDHIANKRW 129
           SP KK HWKQGEFPG T+TS  ++ PLK VK+KLDR+N+AKAWANTVTEALSDHI NKRW
Sbjct: 63  SPAKKRHWKQGEFPGTTETSTRRRAPLKRVKKKLDRKNNAKAWANTVTEALSDHITNKRW 122

Query: 130 LPALEVFEMLREQPFYEPKEGTYMKLIVLLGKSGQPHRARQIFDIMVEERCEATSELYTA 189
           L ALEVFEMLREQPFYEPKEGTYMKL+VLLG+SGQPHRAR +FD MV+ERCE T ELYTA
Sbjct: 123 LQALEVFEMLREQPFYEPKEGTYMKLLVLLGRSGQPHRARLLFDTMVQERCEPTPELYTA 182

Query: 190 LIAAYCRNNLIDDAFSTLNLMKTLPDCQPDVYTYSTLIKACVDDSRFELVESVYEEMVER 249
           L+AAYCRNNLIDDAFSTLNLMKTLP CQPDVYTYS LIKACVDDSRFE+VES+YEEM ER
Sbjct: 183 LLAAYCRNNLIDDAFSTLNLMKTLPRCQPDVYTYSILIKACVDDSRFEIVESLYEEMAER 242

Query: 250 LISPNTVTQNIVLSGYGKIGKYEQMEKVLLGMLESTTCRPDVWTMNIILGVFGNEGQIEM 309
           LI+PNTVTQNIVLSGYGKIGKY+QMEKVL+GMLESTTCRPDVWTMNIIL VFGN+G IEM
Sbjct: 243 LITPNTVTQNIVLSGYGKIGKYDQMEKVLIGMLESTTCRPDVWTMNIILSVFGNKGHIEM 302

Query: 310 MERWYEKFRNFGIEPETRTFNILIGAYGKKRMYDKMCSVMEYMRKLQFPWTTSTYNNVIE 369
           MERWYEKFRNFGIEPETRTFNILIGAYGKKRMYDKM SVMEYMRKLQFPWTTSTYNNVIE
Sbjct: 303 MERWYEKFRNFGIEPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTTSTYNNVIE 362

Query: 370 AFADVGDATSMEYTFEQMRAEGMRADTKTFCCLINGYANAGLFHKVISSVKLAGKYEIPE 429
           AFADVGDA +MEYTFEQMRAEGMRADTKTFCCLINGYANAGLFHKVI SVKLAGK EIPE
Sbjct: 363 AFADVGDAKNMEYTFEQMRAEGMRADTKTFCCLINGYANAGLFHKVIGSVKLAGKLEIPE 422

Query: 430 NTSFYNAVIYACAKAEDLMEMDRVFKRMKNKHRQPDTKTYSIMIEAYGKQGMNDRAHYLE 489
           NTSFYNAVI ACAKAEDLMEMDRVFKRMK+KH QPD KTYSIM+EAYGK+GMNDR HYLE
Sbjct: 423 NTSFYNAVISACAKAEDLMEMDRVFKRMKDKHCQPDNKTYSIMMEAYGKEGMNDRVHYLE 482

Query: 490 IEKKQVINDALDNE 497
           +EKKQVI++A +NE
Sbjct: 483 LEKKQVIDNASNNE 496

[Close]

BLAST of CmoCh08G012680 vs. ExPASy TrEMBL
Match: A0A6J1CCD9 (pentatricopeptide repeat-containing protein At3g06430, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111009924 PE=4 SV=1)

HSP 1 Score: 832.0 bits (2148), Expect = 1.3e-237
Identity = 418/491 (85.13%), Postives = 447/491 (91.04%), Query Frame = 0


Query: 8   SFSFSFSSSLLPSSVSIDHGFVSFSPIV--PSPHSNTLIVRCAFAAPARKSPPSPSSSPF 67
           S SFSFSSSLLP SVS+D+G  SFSPI+   S  SNT IVRCAFAAPARKSPP P     
Sbjct: 3   SLSFSFSSSLLP-SVSLDNGSTSFSPILRRSSSDSNTYIVRCAFAAPARKSPPPP----- 62

Query: 68  KKTHWKQGEFPGITQTSAPKKTPLKNVKRKLDRENHAKAWANTVTEALSDHIANKRWLPA 127
            K HWKQGEFPGIT TSAP KTPLKNVK+KLDR+N+AKAWANTVTEALSDHI+ K+WL A
Sbjct: 63  PKRHWKQGEFPGITGTSAPNKTPLKNVKKKLDRKNNAKAWANTVTEALSDHISKKQWLQA 122

Query: 128 LEVFEMLREQPFYEPKEGTYMKLIVLLGKSGQPHRARQIFDIMVEERCEATSELYTALIA 187
           L+VFEMLREQPFYEPKEGTYMKL+VLLG+SGQ HRA Q+FD MVEERCE TSELYTAL+A
Sbjct: 123 LQVFEMLREQPFYEPKEGTYMKLLVLLGRSGQAHRAHQLFDTMVEERCEPTSELYTALLA 182

Query: 188 AYCRNNLIDDAFSTLNLMKTLPDCQPDVYTYSTLIKACVDDSRFELVESVYEEMVERLIS 247
           AY RNNLIDDAFSTLN MKTLP CQPDVYTYSTLIKACVD SRFELVES+YEEM ERLI+
Sbjct: 183 AYSRNNLIDDAFSTLNHMKTLPRCQPDVYTYSTLIKACVDASRFELVESLYEEMAERLIT 242

Query: 248 PNTVTQNIVLSGYGKIGKYEQMEKVLLGMLESTTCRPDVWTMNIILGVFGNEGQIEMMER 307
           PNTVTQNIVLSGYGKIGKY+QMEKVLLGMLEST+CRPDVWTMNIIL VFGN+ QIEMMER
Sbjct: 243 PNTVTQNIVLSGYGKIGKYDQMEKVLLGMLESTSCRPDVWTMNIILSVFGNKEQIEMMER 302

Query: 308 WYEKFRNFGIEPETRTFNILIGAYGKKRMYDKMCSVMEYMRKLQFPWTTSTYNNVIEAFA 367
           WYEKFRNFGIEPETRTFNILIGAYGKKRMYDKM SVMEYMRKLQFPWTTSTYNNVIEAFA
Sbjct: 303 WYEKFRNFGIEPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTTSTYNNVIEAFA 362

Query: 368 DVGDATSMEYTFEQMRAEGMRADTKTFCCLINGYANAGLFHKVISSVKLAGKYEIPENTS 427
           +VGDA +MEYTFEQM AEGMRADTKTFCCLINGYANAGLFHKVISSVKLAGKYEIPENTS
Sbjct: 363 EVGDAKNMEYTFEQMCAEGMRADTKTFCCLINGYANAGLFHKVISSVKLAGKYEIPENTS 422

Query: 428 FYNAVIYACAKAEDLMEMDRVFKRMKNKHRQPDTKTYSIMIEAYGKQGMNDRAHYLEIEK 487
           FYN VI ACAKA+DL+EMDRVFKRMK+KH QPD KTYSIMIEAYGK+GMND+ HYLE+EK
Sbjct: 423 FYNVVISACAKADDLIEMDRVFKRMKDKHCQPDCKTYSIMIEAYGKEGMNDKVHYLELEK 482

Query: 488 KQVINDALDNE 497
            QVI+DA + +
Sbjct: 483 NQVIDDASNGD 487

[Close]

BLAST of CmoCh08G012680 vs. NCBI nr
Match: XP_022930488.1 (pentatricopeptide repeat-containing protein At3g06430, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 1009.2 bits (2608), Expect = 1.2e-290
Identity = 501/501 (100.00%), Postives = 501/501 (100.00%), Query Frame = 0


Query: 1   MAAMASFSFSFSFSSSLLPSSVSIDHGFVSFSPIVPSPHSNTLIVRCAFAAPARKSPPSP 60
           MAAMASFSFSFSFSSSLLPSSVSIDHGFVSFSPIVPSPHSNTLIVRCAFAAPARKSPPSP
Sbjct: 1   MAAMASFSFSFSFSSSLLPSSVSIDHGFVSFSPIVPSPHSNTLIVRCAFAAPARKSPPSP 60

Query: 61  SSSPFKKTHWKQGEFPGITQTSAPKKTPLKNVKRKLDRENHAKAWANTVTEALSDHIANK 120
           SSSPFKKTHWKQGEFPGITQTSAPKKTPLKNVKRKLDRENHAKAWANTVTEALSDHIANK
Sbjct: 61  SSSPFKKTHWKQGEFPGITQTSAPKKTPLKNVKRKLDRENHAKAWANTVTEALSDHIANK 120

Query: 121 RWLPALEVFEMLREQPFYEPKEGTYMKLIVLLGKSGQPHRARQIFDIMVEERCEATSELY 180
           RWLPALEVFEMLREQPFYEPKEGTYMKLIVLLGKSGQPHRARQIFDIMVEERCEATSELY
Sbjct: 121 RWLPALEVFEMLREQPFYEPKEGTYMKLIVLLGKSGQPHRARQIFDIMVEERCEATSELY 180

Query: 181 TALIAAYCRNNLIDDAFSTLNLMKTLPDCQPDVYTYSTLIKACVDDSRFELVESVYEEMV 240
           TALIAAYCRNNLIDDAFSTLNLMKTLPDCQPDVYTYSTLIKACVDDSRFELVESVYEEMV
Sbjct: 181 TALIAAYCRNNLIDDAFSTLNLMKTLPDCQPDVYTYSTLIKACVDDSRFELVESVYEEMV 240

Query: 241 ERLISPNTVTQNIVLSGYGKIGKYEQMEKVLLGMLESTTCRPDVWTMNIILGVFGNEGQI 300
           ERLISPNTVTQNIVLSGYGKIGKYEQMEKVLLGMLESTTCRPDVWTMNIILGVFGNEGQI
Sbjct: 241 ERLISPNTVTQNIVLSGYGKIGKYEQMEKVLLGMLESTTCRPDVWTMNIILGVFGNEGQI 300

Query: 301 EMMERWYEKFRNFGIEPETRTFNILIGAYGKKRMYDKMCSVMEYMRKLQFPWTTSTYNNV 360
           EMMERWYEKFRNFGIEPETRTFNILIGAYGKKRMYDKMCSVMEYMRKLQFPWTTSTYNNV
Sbjct: 301 EMMERWYEKFRNFGIEPETRTFNILIGAYGKKRMYDKMCSVMEYMRKLQFPWTTSTYNNV 360

Query: 361 IEAFADVGDATSMEYTFEQMRAEGMRADTKTFCCLINGYANAGLFHKVISSVKLAGKYEI 420
           IEAFADVGDATSMEYTFEQMRAEGMRADTKTFCCLINGYANAGLFHKVISSVKLAGKYEI
Sbjct: 361 IEAFADVGDATSMEYTFEQMRAEGMRADTKTFCCLINGYANAGLFHKVISSVKLAGKYEI 420

Query: 421 PENTSFYNAVIYACAKAEDLMEMDRVFKRMKNKHRQPDTKTYSIMIEAYGKQGMNDRAHY 480
           PENTSFYNAVIYACAKAEDLMEMDRVFKRMKNKHRQPDTKTYSIMIEAYGKQGMNDRAHY
Sbjct: 421 PENTSFYNAVIYACAKAEDLMEMDRVFKRMKNKHRQPDTKTYSIMIEAYGKQGMNDRAHY 480

Query: 481 LEIEKKQVINDALDNESLGDR 502
           LEIEKKQVINDALDNESLGDR
Sbjct: 481 LEIEKKQVINDALDNESLGDR 501

[Close]

BLAST of CmoCh08G012680 vs. NCBI nr
Match: XP_023514865.1 (pentatricopeptide repeat-containing protein At3g06430, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 993.0 bits (2566), Expect = 9.1e-286
Identity = 494/502 (98.41%), Postives = 498/502 (99.20%), Query Frame = 0


Query: 1   MAAMASFSFSFSFSSSLLPSSVSIDHGFVSFSPIVPSPHSNTLIVRCAFAAPARKS-PPS 60
           MAAMASFSFSFSFSSSLLPSSVSIDHGFVSFSPIVPSPHSNTLIVRCAFAAPARKS PPS
Sbjct: 1   MAAMASFSFSFSFSSSLLPSSVSIDHGFVSFSPIVPSPHSNTLIVRCAFAAPARKSPPPS 60

Query: 61  PSSSPFKKTHWKQGEFPGITQTSAPKKTPLKNVKRKLDRENHAKAWANTVTEALSDHIAN 120
           PSSSPFKKTHWKQGEFPGITQTSAPKKTPLKNVK+KLDRENHAKAWANTVTEALSDHIAN
Sbjct: 61  PSSSPFKKTHWKQGEFPGITQTSAPKKTPLKNVKKKLDRENHAKAWANTVTEALSDHIAN 120

Query: 121 KRWLPALEVFEMLREQPFYEPKEGTYMKLIVLLGKSGQPHRARQIFDIMVEERCEATSEL 180
           KRWLPALEVFEMLREQPFYEPKEGTYMKLIVLLGKSGQPHRARQIFDIMVEERCEATSEL
Sbjct: 121 KRWLPALEVFEMLREQPFYEPKEGTYMKLIVLLGKSGQPHRARQIFDIMVEERCEATSEL 180

Query: 181 YTALIAAYCRNNLIDDAFSTLNLMKTLPDCQPDVYTYSTLIKACVDDSRFELVESVYEEM 240
           YTALIAAYCRNNLIDDAFSTLNLMKTLP CQPDVYTYSTLIKACVDDSRFELVESVYEEM
Sbjct: 181 YTALIAAYCRNNLIDDAFSTLNLMKTLPGCQPDVYTYSTLIKACVDDSRFELVESVYEEM 240

Query: 241 VERLISPNTVTQNIVLSGYGKIGKYEQMEKVLLGMLESTTCRPDVWTMNIILGVFGNEGQ 300
            ERLISPNTVTQNIVLSGYGKIGKYEQMEKVLLGMLEST+CRPDVWTMNIILGVFGNEGQ
Sbjct: 241 AERLISPNTVTQNIVLSGYGKIGKYEQMEKVLLGMLESTSCRPDVWTMNIILGVFGNEGQ 300

Query: 301 IEMMERWYEKFRNFGIEPETRTFNILIGAYGKKRMYDKMCSVMEYMRKLQFPWTTSTYNN 360
           IEMMERWYEKFRNFGIEPETRTFNILIGAYGKKRMYDKMCSVMEYMRKLQFPWTTSTYNN
Sbjct: 301 IEMMERWYEKFRNFGIEPETRTFNILIGAYGKKRMYDKMCSVMEYMRKLQFPWTTSTYNN 360

Query: 361 VIEAFADVGDATSMEYTFEQMRAEGMRADTKTFCCLINGYANAGLFHKVISSVKLAGKYE 420
           VIEAFADVGDATSMEYTFEQMRAEGMRADTKTFCCLINGYANAGLFHKVISSVKLAGKYE
Sbjct: 361 VIEAFADVGDATSMEYTFEQMRAEGMRADTKTFCCLINGYANAGLFHKVISSVKLAGKYE 420

Query: 421 IPENTSFYNAVIYACAKAEDLMEMDRVFKRMKNKHRQPDTKTYSIMIEAYGKQGMNDRAH 480
           IPENTSFYNAVIYACAKAEDLMEMDRVFKRMKNKHRQPDTKTYSIMIEAYGKQGMNDR H
Sbjct: 421 IPENTSFYNAVIYACAKAEDLMEMDRVFKRMKNKHRQPDTKTYSIMIEAYGKQGMNDRVH 480

Query: 481 YLEIEKKQVINDALDNESLGDR 502
           YLEIEKKQVI+DALDNES+GDR
Sbjct: 481 YLEIEKKQVIDDALDNESVGDR 502

[Close]

BLAST of CmoCh08G012680 vs. NCBI nr
Match: KAG7021088.1 (Pentatricopeptide repeat-containing protein, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 973.8 bits (2516), Expect = 5.7e-280
Identity = 486/494 (98.38%), Postives = 489/494 (98.99%), Query Frame = 0


Query: 1   MAAMASFSFSFSFSSSLLPSSVSIDHGFVSFSPIVPSPHSNTLIVRCAFAAPARKS-PPS 60
           MAAMASFSFSFSFSSSLLPSSVSIDHGFVSFSPIVPSPHSNTLIVRCAFAAPARKS PPS
Sbjct: 1   MAAMASFSFSFSFSSSLLPSSVSIDHGFVSFSPIVPSPHSNTLIVRCAFAAPARKSPPPS 60

Query: 61  PSSSPFKKTHWKQGEFPGITQTSAPKKTPLKNVKRKLDRENHAKAWANTVTEALSDHIAN 120
           PSSSPFKKTHWKQGEFPGITQTSAPKKTPLKNVK+KLDRENHAKAWANTVTEALSDHIAN
Sbjct: 61  PSSSPFKKTHWKQGEFPGITQTSAPKKTPLKNVKKKLDRENHAKAWANTVTEALSDHIAN 120

Query: 121 KRWLPALEVFEMLREQPFYEPKEGTYMKLIVLLGKSGQPHRARQIFDIMVEERCEATSEL 180
           KRWLPALEVFEMLREQPFYEPKEGTYMKLIVLLGKSGQPHRARQIFDIMVEERCEATSEL
Sbjct: 121 KRWLPALEVFEMLREQPFYEPKEGTYMKLIVLLGKSGQPHRARQIFDIMVEERCEATSEL 180

Query: 181 YTALIAAYCRNNLIDDAFSTLNLMKTLPDCQPDVYTYSTLIKACVDDSRFELVESVYEEM 240
           YTALIAAYCRNNLIDDAFSTLNLMKTLP CQPDVYTYSTLIKACVDDSRFELVESVYEEM
Sbjct: 181 YTALIAAYCRNNLIDDAFSTLNLMKTLPGCQPDVYTYSTLIKACVDDSRFELVESVYEEM 240

Query: 241 VERLISPNTVTQNIVLSGYGKIGKYEQMEKVLLGMLESTTCRPDVWTMNIILGVFGNEGQ 300
            ERLISPNTVTQNIVLSGYGKIGKYEQMEKVLLGM+ESTTCRPDV TMNIILGVFGNEGQ
Sbjct: 241 AERLISPNTVTQNIVLSGYGKIGKYEQMEKVLLGMVESTTCRPDVRTMNIILGVFGNEGQ 300

Query: 301 IEMMERWYEKFRNFGIEPETRTFNILIGAYGKKRMYDKMCSVMEYMRKLQFPWTTSTYNN 360
           IEMMERWYEKFRNFGIEPETRTFNILIGAYGKKRMYDKMCSVMEYMRKLQFPWTTSTYNN
Sbjct: 301 IEMMERWYEKFRNFGIEPETRTFNILIGAYGKKRMYDKMCSVMEYMRKLQFPWTTSTYNN 360

Query: 361 VIEAFADVGDATSMEYTFEQMRAEGMRADTKTFCCLINGYANAGLFHKVISSVKLAGKYE 420
           VIEAFADVGDATSMEYTFEQMRAEGMRADTKTFCCLINGYANAGLFHKVISSVKLAGKYE
Sbjct: 361 VIEAFADVGDATSMEYTFEQMRAEGMRADTKTFCCLINGYANAGLFHKVISSVKLAGKYE 420

Query: 421 IPENTSFYNAVIYACAKAEDLMEMDRVFKRMKNKHRQPDTKTYSIMIEAYGKQGMNDRAH 480
           IPENTSFYNAVIYACAKAEDLMEMDRVFKRMKNKHRQPDTKTYSIMIEAYGKQGMNDR H
Sbjct: 421 IPENTSFYNAVIYACAKAEDLMEMDRVFKRMKNKHRQPDTKTYSIMIEAYGKQGMNDRVH 480

Query: 481 YLEIEKKQVINDAL 494
           YLEIEKKQVI+DAL
Sbjct: 481 YLEIEKKQVIDDAL 494

[Close]

BLAST of CmoCh08G012680 vs. NCBI nr
Match: XP_022999798.1 (pentatricopeptide repeat-containing protein At3g06430, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 937.6 bits (2422), Expect = 4.5e-269
Identity = 470/498 (94.38%), Postives = 478/498 (95.98%), Query Frame = 0


Query: 1   MAAMASFSFSFSFSSSLLPSSVSIDHGFVSFSPIV----PSPHSNTLIVRCAFAAPARKS 60
           MAAMA    S+SFSSSLLPSSVSIDHGFVSFSPI     PSPHSNTLIVRCAFAAPAR+S
Sbjct: 1   MAAMA----SYSFSSSLLPSSVSIDHGFVSFSPIFPSPSPSPHSNTLIVRCAFAAPARRS 60

Query: 61  PPSPS-SSPFKKTHWKQGEFPGITQTSAPKKTPLKNVKRKLDRENHAKAWANTVTEALSD 120
           PP P  SSPFKK  WKQGEFPGITQTSAPKKTPLKNVK+KLDRENHAKAWANTVTEALSD
Sbjct: 61  PPPPPFSSPFKKRQWKQGEFPGITQTSAPKKTPLKNVKKKLDRENHAKAWANTVTEALSD 120

Query: 121 HIANKRWLPALEVFEMLREQPFYEPKEGTYMKLIVLLGKSGQPHRARQIFDIMVEERCEA 180
           HIANKRWLPALEVFEMLREQPFYEPKEGTYMKLIVLLG+SGQPHRARQIFDIM EERCE 
Sbjct: 121 HIANKRWLPALEVFEMLREQPFYEPKEGTYMKLIVLLGRSGQPHRARQIFDIMFEERCEP 180

Query: 181 TSELYTALIAAYCRNNLIDDAFSTLNLMKTLPDCQPDVYTYSTLIKACVDDSRFELVESV 240
           TSELYTALIAAYCRNNLIDDAFSTLNLMKTLP CQPDVYTYSTLIKACVD+SRFELVES+
Sbjct: 181 TSELYTALIAAYCRNNLIDDAFSTLNLMKTLPGCQPDVYTYSTLIKACVDESRFELVESL 240

Query: 241 YEEMVERLISPNTVTQNIVLSGYGKIGKYEQMEKVLLGMLESTTCRPDVWTMNIILGVFG 300
           YEEM ERLISPNTVTQNIVLSGYGKIGKYEQMEKVLLGMLESTTCRPDVWTMNIILGVFG
Sbjct: 241 YEEMAERLISPNTVTQNIVLSGYGKIGKYEQMEKVLLGMLESTTCRPDVWTMNIILGVFG 300

Query: 301 NEGQIEMMERWYEKFRNFGIEPETRTFNILIGAYGKKRMYDKMCSVMEYMRKLQFPWTTS 360
           NEGQIEMMERWYEKFRNFGIEPETRTFNILIGAYGKKRMYDKMCSVMEYMRKLQFPWTTS
Sbjct: 301 NEGQIEMMERWYEKFRNFGIEPETRTFNILIGAYGKKRMYDKMCSVMEYMRKLQFPWTTS 360

Query: 361 TYNNVIEAFADVGDATSMEYTFEQMRAEGMRADTKTFCCLINGYANAGLFHKVISSVKLA 420
           TYNNVIEAFADVGDATSMEYTFEQMRAEGMRADTKTFCCLINGYANAGLFHKVISSVKLA
Sbjct: 361 TYNNVIEAFADVGDATSMEYTFEQMRAEGMRADTKTFCCLINGYANAGLFHKVISSVKLA 420

Query: 421 GKYEIPENTSFYNAVIYACAKAEDLMEMDRVFKRMKNKHRQPDTKTYSIMIEAYGKQGMN 480
           GKYEIPENTSFYNAVIYACAKAEDLMEMDRVFKRMKNKHRQPD KTYSIMIEAYGKQGMN
Sbjct: 421 GKYEIPENTSFYNAVIYACAKAEDLMEMDRVFKRMKNKHRQPDIKTYSIMIEAYGKQGMN 480

Query: 481 DRAHYLEIEKKQVINDAL 494
           DR HY+EIEKKQVI+DAL
Sbjct: 481 DRVHYVEIEKKQVIDDAL 494

[Close]

BLAST of CmoCh08G012680 vs. NCBI nr
Match: XP_038875824.1 (pentatricopeptide repeat-containing protein At3g06430, chloroplastic [Benincasa hispida])

HSP 1 Score: 865.9 bits (2236), Expect = 1.7e-247
Identity = 430/491 (87.58%), Postives = 456/491 (92.87%), Query Frame = 0


Query: 10  SFSFSSSLLPSSVSIDHGFVSFSPIV--PSPHSNTLIVRCAFAAPARKSPPS--PSSSPF 69
           SFSFSSSLLPSSVS DHG   F PI    S HSN+ IVRCAFAAP RKSPP    SSSP 
Sbjct: 3   SFSFSSSLLPSSVSFDHGATFFFPIFVSSSSHSNSPIVRCAFAAPTRKSPPPSISSSSPA 62

Query: 70  KKTHWKQGEFPGITQTSAPKKTPLKNVKRKLDRENHAKAWANTVTEALSDHIANKRWLPA 129
           KK HWKQGEFPGIT+TS P+KTPLKNVK+KLDR+N+AKAWANTVTEALSDHI NKRWL A
Sbjct: 63  KKKHWKQGEFPGITETSTPRKTPLKNVKKKLDRKNNAKAWANTVTEALSDHITNKRWLQA 122

Query: 130 LEVFEMLREQPFYEPKEGTYMKLIVLLGKSGQPHRARQIFDIMVEERCEATSELYTALIA 189
           LEVFEMLREQPFYEPKEGTYMKL+VLLG+SGQPHRAR +FD M+EERCE TSELYTAL+A
Sbjct: 123 LEVFEMLREQPFYEPKEGTYMKLLVLLGRSGQPHRARSLFDTMLEERCEPTSELYTALLA 182

Query: 190 AYCRNNLIDDAFSTLNLMKTLPDCQPDVYTYSTLIKACVDDSRFELVESVYEEMVERLIS 249
           AYCRNNLID+AFSTLNLMKTLP CQPDVYTYSTLIKACVD SRFE+VES+YEEM ERLI+
Sbjct: 183 AYCRNNLIDEAFSTLNLMKTLPGCQPDVYTYSTLIKACVDASRFEIVESLYEEMAERLIT 242

Query: 250 PNTVTQNIVLSGYGKIGKYEQMEKVLLGMLESTTCRPDVWTMNIILGVFGNEGQIEMMER 309
           PNTVTQNIVLSGYGKIGKY+QMEKVLLGMLES+TCRPDVWTMNIIL VFGN+GQIEMMER
Sbjct: 243 PNTVTQNIVLSGYGKIGKYDQMEKVLLGMLESSTCRPDVWTMNIILSVFGNKGQIEMMER 302

Query: 310 WYEKFRNFGIEPETRTFNILIGAYGKKRMYDKMCSVMEYMRKLQFPWTTSTYNNVIEAFA 369
           WYEKFRNFGIEPETRTFNILIGAYGKKRMYDKM SVMEYMRKLQFPWTTSTYNNVIEAFA
Sbjct: 303 WYEKFRNFGIEPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTTSTYNNVIEAFA 362

Query: 370 DVGDATSMEYTFEQMRAEGMRADTKTFCCLINGYANAGLFHKVISSVKLAGKYEIPENTS 429
           DVGDA +MEYTFEQMRAEGMRADTKTFCCLINGYANAGLFHKVISSVKLAGK+EIPENTS
Sbjct: 363 DVGDAKNMEYTFEQMRAEGMRADTKTFCCLINGYANAGLFHKVISSVKLAGKFEIPENTS 422

Query: 430 FYNAVIYACAKAEDLMEMDRVFKRMKNKHRQPDTKTYSIMIEAYGKQGMNDRAHYLEIEK 489
           FYNAVI ACAKAEDLMEMDRVFKRMK+KH QPD+KTYSIMIEAYGK+GMNDR HYLE+EK
Sbjct: 423 FYNAVISACAKAEDLMEMDRVFKRMKDKHCQPDSKTYSIMIEAYGKEGMNDRVHYLELEK 482

Query: 490 KQVINDALDNE 497
           KQVI+ A +NE
Sbjct: 483 KQVIDYASNNE 493

[Close]

BLAST of CmoCh08G012680 vs. TAIR 10
Match: AT3G06430.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 663.7 bits (1711), Expect = 1.2e-190
Identity = 333/483 (68.94%), Postives = 400/483 (82.82%), Query Frame = 0


Query: 8   SFSFSFSSSLLPSSVSIDHGFVSFSPIVPSPHSNTLIVRCAFAAPARKSPPSPSSSPFKK 67
           S S SFSSSL  S   I  G   F       H +  IVRC  AA ++ SP S +    KK
Sbjct: 3   SMSLSFSSSLCSS--RIPEGKRRFR------HRDVGIVRCVLAA-SKSSPGSVT----KK 62

Query: 68  THWKQGEFPGITQTSAPKKTPLKNVKRKLDRENHAKAWANTVTEALSDHIANKRWLPALE 127
             WK GEFPGIT+    ++TP+KNVK+KLDR + A  W NTVTE LSD IA K+WL ALE
Sbjct: 63  RLWKDGEFPGITEPVNQRRTPIKNVKKKLDRRSKANGWVNTVTETLSDLIAKKQWLQALE 122

Query: 128 VFEMLREQPFYEPKEGTYMKLIVLLGKSGQPHRARQIFDIMVEERCEATSELYTALIAAY 187
           VF+MLREQ FY+PKEGTYMKL+VLLGKSGQP+RA+++FD M+EE  E T ELYTAL+AAY
Sbjct: 123 VFDMLREQTFYQPKEGTYMKLLVLLGKSGQPNRAQKLFDEMLEEGLEPTVELYTALLAAY 182

Query: 188 CRNNLIDDAFSTLNLMKTLPDCQPDVYTYSTLIKACVDDSRFELVESVYEEMVERLISPN 247
            R+NLIDDAFS L+ MK+ P CQPDV+TYSTL+KACVD S+F+LV+S+Y+EM ERLI+PN
Sbjct: 183 TRSNLIDDAFSILDKMKSFPQCQPDVFTYSTLLKACVDASQFDLVDSLYKEMDERLITPN 242

Query: 248 TVTQNIVLSGYGKIGKYEQMEKVLLGMLESTTCRPDVWTMNIILGVFGNEGQIEMMERWY 307
           TVTQNIVLSGYG++G+++QMEKVL  ML ST C+PDVWTMNIIL VFGN G+I+MME WY
Sbjct: 243 TVTQNIVLSGYGRVGRFDQMEKVLSDMLVSTACKPDVWTMNIILSVFGNMGKIDMMESWY 302

Query: 308 EKFRNFGIEPETRTFNILIGAYGKKRMYDKMCSVMEYMRKLQFPWTTSTYNNVIEAFADV 367
           EKFRNFGIEPETRTFNILIG+YGKKRMYDKM SVMEYMRKL+FPWTTSTYNN+IEAFADV
Sbjct: 303 EKFRNFGIEPETRTFNILIGSYGKKRMYDKMSSVMEYMRKLEFPWTTSTYNNIIEAFADV 362

Query: 368 GDATSMEYTFEQMRAEGMRADTKTFCCLINGYANAGLFHKVISSVKLAGKYEIPENTSFY 427
           GDA +ME TF+QMR+EGM+ADTKTFCCLINGYANAGLFHKVISSV+LA K+EIPENT+FY
Sbjct: 363 GDAKNMELTFDQMRSEGMKADTKTFCCLINGYANAGLFHKVISSVQLAAKFEIPENTAFY 422

Query: 428 NAVIYACAKAEDLMEMDRVFKRMKNKHRQPDTKTYSIMIEAYGKQGMNDRAHYLEIEKKQ 487
           NAVI ACAKA+DL+EM+RV+ RMK +    D++T+ IM+EAY K+GMND+ +YLE E+++
Sbjct: 423 NAVISACAKADDLIEMERVYIRMKERQCVCDSRTFEIMVEAYEKEGMNDKIYYLEQERQK 472

Query: 488 VIN 491
           +++
Sbjct: 483 LMD 472

[Close]

BLAST of CmoCh08G012680 vs. TAIR 10
Match: AT3G53170.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 325.9 bits (834), Expect = 5.8e-89
Identity = 161/403 (39.95%), Postives = 250/403 (62.03%), Query Frame = 0


Query: 89  LKNVKRKLDRENHAKAWANTVTEALSDHIANKRWLPALEVFEMLREQPFYEPKEGTYMKL 148
           +K ++RK + E +   W   V EAL + I   RW  AL++F +LR+Q +YEP+  TY KL
Sbjct: 91  VKGIERKANSEKYLTLWPKAVLEALDEAIKENRWQSALKIFNLLRKQHWYEPRCKTYTKL 150

Query: 149 IVLLGKSGQPHRARQIFDIMVEERCEATSELYTALIAAYCRNNLIDDAFSTLNLMKTLPD 208
             +LG   QP +A  +F++M+ E  + T ++YT+LI+ Y ++ L+D AFSTL  MK++ D
Sbjct: 151 FKVLGNCKQPDQASLLFEVMLSEGLKPTIDVYTSLISVYGKSELLDKAFSTLEYMKSVSD 210

Query: 209 CQPDVYTYSTLIKACVDDSRFELVESVYEEMVERLISPNTVTQNIVLSGYGKIGKYEQME 268
           C+PDV+T++ LI  C    RF+LV+S+  EM    +  +TVT N ++ GYGK G +E+ME
Sbjct: 211 CKPDVFTFTVLISCCCKLGRFDLVKSIVLEMSYLGVGCSTVTYNTIIDGYGKAGMFEEME 270

Query: 269 KVLLGMLESTTCRPDVWTMNIILGVFGNEGQIEMMERWYEKFRNFGIEPETRTFNILIGA 328
            VL  M+E     PDV T+N I+G +GN   +  ME WY +F+  G++P+  TFNILI +
Sbjct: 271 SVLADMIEDGDSLPDVCTLNSIIGSYGNGRNMRKMESWYSRFQLMGVQPDITTFNILILS 330

Query: 329 YGKKRMYDKMCSVMEYMRKLQFPWTTSTYNNVIEAFADVGDATSMEYTFEQMRAEGMRAD 388
           +GK  MY KMCSVM++M K  F  TT TYN VIE F   G    M+  F +M+ +G++ +
Sbjct: 331 FGKAGMYKKMCSVMDFMEKRFFSLTTVTYNIVIETFGKAGRIEKMDDVFRKMKYQGVKPN 390

Query: 389 TKTFCCLINGYANAGLFHKVISSVKLAGKYEIPENTSFYNAVIYACAKAEDLMEMDRVFK 448
           + T+C L+N Y+ AGL  K+ S ++     ++  +T F+N +I A  +A DL  M  ++ 
Sbjct: 391 SITYCSLVNAYSKAGLVVKIDSVLRQIVNSDVVLDTPFFNCIINAYGQAGDLATMKELYI 450

Query: 449 RMKNKHRQPDTKTYSIMIEAYGKQGMNDRAHYLEIEKKQVIND 492
           +M+ +  +PD  T++ MI+ Y   G+ D     E+EK+ + +D
Sbjct: 451 QMEERKCKPDKITFATMIKTYTAHGIFDAVQ--ELEKQMISSD 491

[Close]

BLAST of CmoCh08G012680 vs. TAIR 10
Match: AT5G48730.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 317.0 bits (811), Expect = 2.7e-86
Identity = 161/377 (42.71%), Postives = 224/377 (59.42%), Query Frame = 0


Query: 98  RENHAKAWANTVTEALSDHIANKRWLPALEVFEMLREQPFYEPKEGTYMKLIVLLGKSGQ 157
           ++   K    TV E+L + I   RW  A++VFE+LREQ +Y+P  G Y+KLIV+LGK  Q
Sbjct: 106 KKGSKKLLPRTVLESLHERITALRWESAIQVFELLREQLWYKPNVGIYVKLIVMLGKCKQ 165

Query: 158 PHRARQIFDIMVEERCEATSELYTALIAAYCRNNLIDDAFSTLNLMKTLPDCQPDVYTYS 217
           P +A ++F  M+ E C    E+YTAL++AY R+   D AF+ L  MK+  +CQPDV+TYS
Sbjct: 166 PEKAHELFQEMINEGCVVNHEVYTALVSAYSRSGRFDAAFTLLERMKSSHNCQPDVHTYS 225

Query: 218 TLIKACVDDSRFELVESVYEEMVERLISPNTVTQNIVLSGYGKIGKYEQMEKVLLGMLES 277
            LIK+ +    F+ V+ +  +M  + I PNT+T N ++  YGK   + +ME  L+ ML  
Sbjct: 226 ILIKSFLQVFAFDKVQDLLSDMRRQGIRPNTITYNTLIDAYGKAKMFVEMESTLIQMLGE 285

Query: 278 TTCRPDVWTMNIILGVFGNEGQIEMMERWYEKFRNFGIEPETRTFNILIGAYGKKRMYDK 337
             C+PD WTMN  L  FG  GQIEMME  YEKF++ GIEP  RTFNIL+ +YGK   Y K
Sbjct: 286 DDCKPDSWTMNSTLRAFGGNGQIEMMENCYEKFQSSGIEPNIRTFNILLDSYGKSGNYKK 345

Query: 338 MCSVMEYMRKLQFPWTTSTYNNVIEAFADVGDATSMEYTFEQMRAEGMRADTKTFCCLIN 397
           M +VMEYM+K  + WT  TYN VI+AF   GD   MEY F  M++E +     T C L+ 
Sbjct: 346 MSAVMEYMQKYHYSWTIVTYNVVIDAFGRAGDLKQMEYLFRLMQSERIFPSCVTLCSLVR 405

Query: 398 GYANAGLFHKVISSVKLAGKYEIPENTSFYNAVIYACAKAEDLMEMDRVFKRMKNKHRQP 457
            Y  A    K+   ++     +I  +  F+N ++ A  + E   EM  V + M+ K  +P
Sbjct: 406 AYGRASKADKIGGVLRFIENSDIRLDLVFFNCLVDAYGRMEKFAEMKGVLELMEKKGFKP 465

Query: 458 DTKTYSIMIEAYGKQGM 475
           D  TY  M++AY   GM
Sbjct: 466 DKITYRTMVKAYRISGM 482

[Close]

BLAST of CmoCh08G012680 vs. TAIR 10
Match: AT4G39620.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 168.7 bits (426), Expect = 1.2e-41
Identity = 106/393 (26.97%), Postives = 183/393 (46.56%), Query Frame = 0


Query: 92  VKRKLDRENHAKAWANTVTEALSDHI--------ANKRWLPALEVFEMLREQPFYEPKEG 151
           + R  DRE   K     V     DH          + +WL  LEVF  +++Q +Y P  G
Sbjct: 75  MSRISDREPLVKTLDKYVKVVRCDHCFLLFEELGKSDKWLQCLEVFRWMQKQRWYIPDNG 134

Query: 152 TYMKLIVLLGKSGQPHRARQIFDIMVEERCEATSELYTALIAAYC----RNNLIDDAFST 211
            Y KLI ++GK GQ   A  +F  M    C   + +Y ALI A+     +   ++     
Sbjct: 135 VYSKLISVMGKKGQTRMAMWLFSEMKNSGCRPDASVYNALITAHLHTRDKAKALEKVRGY 194

Query: 212 LNLMKTLPDCQPDVYTYSTLIKACVDDSRFELVESVYEEMVERLISPNTVTQNIVLSGYG 271
           L+ MK +  CQP+V TY+ L++A     + + V ++++++    +SP+  T N V+  YG
Sbjct: 195 LDKMKGIERCQPNVVTYNILLRAFAQSGKVDQVNALFKDLDMSPVSPDVYTFNGVMDAYG 254

Query: 272 KIGKYEQMEKVLLGMLESTTCRPDVWTMNIILGVFGNEGQIEMMERWYEKFRNFGIEPET 331
           K G  ++ME VL  M  S  C+PD+ T N+++  +G + + E ME+ ++       +P  
Sbjct: 255 KNGMIKEMEAVLTRM-RSNECKPDIITFNVLIDSYGKKQEFEKMEQTFKSLMRSKEKPTL 314

Query: 332 RTFNILIGAYGKKRMYDKMCSVMEYMRKLQFPWTTSTYNNVIEAFADVGDATSMEYTFEQ 391
            TFN +I  YGK RM DK   V + M  + +  +  TY  +I  +   G  +     FE+
Sbjct: 315 PTFNSMIINYGKARMIDKAEWVFKKMNDMNYIPSFITYECMIMMYGYCGSVSRAREIFEE 374

Query: 392 MRAEGMRADTKTFCCLINGYANAGLFHKVISSVKLAGKYEIPENTSFYNAVIYACAKAED 451
           +          T   ++  Y   GL+ +       A  + +  + S Y  +  A  KA+ 
Sbjct: 375 VGESDRVLKASTLNAMLEVYCRNGLYIEADKLFHNASAFRVHPDASTYKFLYKAYTKADM 434

Query: 452 LMEMDRVFKRMKNKHRQPDTKTYSIMIEAYGKQ 473
             ++  + K+M+     P+ + +   +E +G +
Sbjct: 435 KEQVQILMKKMEKDGIVPNKRFFLEALEVFGSR 466

[Close]

BLAST of CmoCh08G012680 vs. TAIR 10
Match: AT4G39620.2 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 168.7 bits (426), Expect = 1.2e-41
Identity = 106/393 (26.97%), Postives = 183/393 (46.56%), Query Frame = 0


Query: 92  VKRKLDRENHAKAWANTVTEALSDHI--------ANKRWLPALEVFEMLREQPFYEPKEG 151
           + R  DRE   K     V     DH          + +WL  LEVF  +++Q +Y P  G
Sbjct: 75  MSRISDREPLVKTLDKYVKVVRCDHCFLLFEELGKSDKWLQCLEVFRWMQKQRWYIPDNG 134

Query: 152 TYMKLIVLLGKSGQPHRARQIFDIMVEERCEATSELYTALIAAYC----RNNLIDDAFST 211
            Y KLI ++GK GQ   A  +F  M    C   + +Y ALI A+     +   ++     
Sbjct: 135 VYSKLISVMGKKGQTRMAMWLFSEMKNSGCRPDASVYNALITAHLHTRDKAKALEKVRGY 194

Query: 212 LNLMKTLPDCQPDVYTYSTLIKACVDDSRFELVESVYEEMVERLISPNTVTQNIVLSGYG 271
           L+ MK +  CQP+V TY+ L++A     + + V ++++++    +SP+  T N V+  YG
Sbjct: 195 LDKMKGIERCQPNVVTYNILLRAFAQSGKVDQVNALFKDLDMSPVSPDVYTFNGVMDAYG 254

Query: 272 KIGKYEQMEKVLLGMLESTTCRPDVWTMNIILGVFGNEGQIEMMERWYEKFRNFGIEPET 331
           K G  ++ME VL  M  S  C+PD+ T N+++  +G + + E ME+ ++       +P  
Sbjct: 255 KNGMIKEMEAVLTRM-RSNECKPDIITFNVLIDSYGKKQEFEKMEQTFKSLMRSKEKPTL 314

Query: 332 RTFNILIGAYGKKRMYDKMCSVMEYMRKLQFPWTTSTYNNVIEAFADVGDATSMEYTFEQ 391
            TFN +I  YGK RM DK   V + M  + +  +  TY  +I  +   G  +     FE+
Sbjct: 315 PTFNSMIINYGKARMIDKAEWVFKKMNDMNYIPSFITYECMIMMYGYCGSVSRAREIFEE 374

Query: 392 MRAEGMRADTKTFCCLINGYANAGLFHKVISSVKLAGKYEIPENTSFYNAVIYACAKAED 451
           +          T   ++  Y   GL+ +       A  + +  + S Y  +  A  KA+ 
Sbjct: 375 VGESDRVLKASTLNAMLEVYCRNGLYIEADKLFHNASAFRVHPDASTYKFLYKAYTKADM 434

Query: 452 LMEMDRVFKRMKNKHRQPDTKTYSIMIEAYGKQ 473
             ++  + K+M+     P+ + +   +E +G +
Sbjct: 435 KEQVQILMKKMEKDGIVPNKRFFLEALEVFGSR 466

The following BLAST results are available for this feature:

BLAST of CmoCh08G012680 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SQU6	1.7e-189	68.94	Pentatricopeptide repeat-containing protein At3g06430, chloroplastic OS=Arabidop...	[more]
Q9SCP4	1.8e-87	40.30	Pentatricopeptide repeat-containing protein At3g53170 OS=Arabidopsis thaliana OX...	[more]
Q9FKC3	3.8e-85	42.71	Pentatricopeptide repeat-containing protein At5g48730, chloroplastic OS=Arabidop...	[more]
Q9SV96	1.7e-40	26.97	Pentatricopeptide repeat-containing protein At4g39620, chloroplastic OS=Arabidop...	[more]
A7LN87	1.7e-40	28.33	Pentatricopeptide repeat-containing protein PPR5, chloroplastic OS=Zea mays OX=4...	[more]

BLAST of CmoCh08G012680 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EVC0	5.9e-291	100.00	pentatricopeptide repeat-containing protein At3g06430, chloroplastic-like OS=Cuc...	[more]
A0A6J1KKQ9	2.2e-269	94.38	pentatricopeptide repeat-containing protein At3g06430, chloroplastic-like OS=Cuc...	[more]
A0A1S3C7L9	1.3e-242	85.45	pentatricopeptide repeat-containing protein At3g06430, chloroplastic OS=Cucumis ...	[more]
A0A0A0K7C8	4.3e-241	85.02	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G000680 PE=4 SV=1	[more]
A0A6J1CCD9	1.3e-237	85.13	pentatricopeptide repeat-containing protein At3g06430, chloroplastic OS=Momordic...	[more]

BLAST of CmoCh08G012680 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022930488.1	1.2e-290	100.00	pentatricopeptide repeat-containing protein At3g06430, chloroplastic-like [Cucur...	[more]
XP_023514865.1	9.1e-286	98.41	pentatricopeptide repeat-containing protein At3g06430, chloroplastic-like [Cucur...	[more]
KAG7021088.1	5.7e-280	98.38	Pentatricopeptide repeat-containing protein, chloroplastic, partial [Cucurbita a...	[more]
XP_022999798.1	4.5e-269	94.38	pentatricopeptide repeat-containing protein At3g06430, chloroplastic-like [Cucur...	[more]
XP_038875824.1	1.7e-247	87.58	pentatricopeptide repeat-containing protein At3g06430, chloroplastic [Benincasa ...	[more]

BLAST of CmoCh08G012680 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G06430.1	1.2e-190	68.94	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT3G53170.1	5.8e-89	39.95	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT5G48730.1	2.7e-86	42.71	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT4G39620.1	1.2e-41	26.97	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT4G39620.2	1.2e-41	26.97	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 317..365 e-value: 1.8E-7 score: 31.2 coord: 423..469 e-value: 6.2E-11 score: 42.3 coord: 179..224 e-value: 2.6E-12 score: 46.7
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 249..283 e-value: 1.1E-4 score: 20.1 coord: 356..388 e-value: 2.5E-4 score: 19.0 coord: 427..458 e-value: 9.7E-6 score: 23.4 coord: 321..349 e-value: 1.0E-5 score: 23.4 coord: 214..247 e-value: 1.2E-6 score: 26.3 coord: 144..176 e-value: 0.0022 score: 16.0 coord: 179..213 e-value: 1.9E-6 score: 25.7
IPR002885	Pentatricopeptide repeat	PFAM	PF13812	PPR_3	coord: 235..297 e-value: 2.2E-6 score: 27.6
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 391..409 e-value: 0.63 score: 10.4 coord: 144..173 e-value: 0.04 score: 14.2
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 283..317 score: 9.382931
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 141..175 score: 8.61564
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 247..282 score: 8.780059
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 212..246 score: 11.147699
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 353..387 score: 9.328124
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 318..352 score: 8.604678
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 423..457 score: 10.084454
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 413..489 e-value: 1.1E-13 score: 52.9 coord: 351..412 e-value: 2.3E-10 score: 42.1
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 207..274 e-value: 8.8E-18 score: 66.5 coord: 275..350 e-value: 4.1E-14 score: 54.5 coord: 80..206 e-value: 3.2E-18 score: 67.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 60..87
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 53..87
None	No IPR available	PANTHER	PTHR47932:SF4	OS03G0309800 PROTEIN	coord: 8..490
None	No IPR available	PANTHER	PTHR47932	ATPASE EXPRESSION PROTEIN 3	coord: 8..490

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh08G012680.1	CmoCh08G012680.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009793	embryo development ending in seed dormancy
biological_process	GO:0009553	embryo sac development
biological_process	GO:0009555	pollen development
biological_process	GO:0048868	pollen tube development
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0005515	protein binding
molecular_function	GO:0019843	rRNA binding