CmoCh08G011360 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh08G011360
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionDUF4218 domain-containing protein
LocationCmo_Chr08: 7260046 .. 7260699 (-)
RNA-Seq ExpressionCmoCh08G011360
SyntenyCmoCh08G011360
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATCCTACTTCAAACTTGAAATGAAGCAAACCAACCACTCTTTTTCTTAGTTCCCTTTTCACTTTTTGCTTTGTTTTCGAGGATTCGAGATGGAAACCGAAGTCAACGATGATGATTTGTTGTTTGCCGAGCTCACGAGGCGGATTTCGCTTCTCATTATGGACGACGACGAGCTTCCGAGCGTTCATACGGTTCGTTTCATCTCCCTGTAAACAATCAGTCTTATGTTTGTTTAATGTTTAAAATGCTTCTAGGGTTAATATGGTAATTGAACGACTTGTTACTTTGAAGTTTTTTTAGGTAAGTATGGTATCTATAGGCTCGATTTTCCGTGTTTAGTCGGGATATAAAGTACACAGCTCAAATACCTTAAAAAAAATTTAGGGACTAAACTTGTCATTAAACATATTTTAAGTTTTTGCAGGATTTGAGTCGGACAATACACCGAGTTCGACCTGGGCAATTGCCATTAATGGTGGATTACGAGAATGGCTTTGTAAGGGAGAGCAAAGGTACTGGAGTTTTCATCCCGACACGGTTGCCATCACCTAAGAGGAAGCATAGAAATGTCGTGGGCTACAGAATCAAGTCGGAAAATAAGAGGCTCAATTCTCAACCGTCCTCGACCTATTATTTTAAGCCCAAAAAGAGTTGA

mRNA sequence

ATCCTACTTCAAACTTGAAATGAAGCAAACCAACCACTCTTTTTCTTAGTTCCCTTTTCACTTTTTGCTTTGTTTTCGAGGATTCGAGATGGAAACCGAAGTCAACGATGATGATTTGTTGTTTGCCGAGCTCACGAGGCGGATTTCGCTTCTCATTATGGACGACGACGAGCTTCCGAGCGTTCATACGGATTTGAGTCGGACAATACACCGAGTTCGACCTGGGCAATTGCCATTAATGGTGGATTACGAGAATGGCTTTGTAAGGGAGAGCAAAGGTACTGGAGTTTTCATCCCGACACGGTTGCCATCACCTAAGAGGAAGCATAGAAATGTCGTGGGCTACAGAATCAAGTCGGAAAATAAGAGGCTCAATTCTCAACCGTCCTCGACCTATTATTTTAAGCCCAAAAAGAGTTGA

Coding sequence (CDS)

ATGGAAACCGAAGTCAACGATGATGATTTGTTGTTTGCCGAGCTCACGAGGCGGATTTCGCTTCTCATTATGGACGACGACGAGCTTCCGAGCGTTCATACGGATTTGAGTCGGACAATACACCGAGTTCGACCTGGGCAATTGCCATTAATGGTGGATTACGAGAATGGCTTTGTAAGGGAGAGCAAAGGTACTGGAGTTTTCATCCCGACACGGTTGCCATCACCTAAGAGGAAGCATAGAAATGTCGTGGGCTACAGAATCAAGTCGGAAAATAAGAGGCTCAATTCTCAACCGTCCTCGACCTATTATTTTAAGCCCAAAAAGAGTTGA

Protein sequence

METEVNDDDLLFAELTRRISLLIMDDDELPSVHTDLSRTIHRVRPGQLPLMVDYENGFVRESKGTGVFIPTRLPSPKRKHRNVVGYRIKSENKRLNSQPSSTYYFKPKKS
Homology
BLAST of CmoCh08G011360 vs. ExPASy TrEMBL
Match: A0A6J1EQJ8 (uncharacterized protein LOC111436898 OS=Cucurbita moschata OX=3662 GN=LOC111436898 PE=4 SV=1)

HSP 1 Score: 221.5 bits (563), Expect = 1.8e-54
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 0

Query: 1   METEVNDDDLLFAELTRRISLLIMDDDELPSVHTDLSRTIHRVRPGQLPLMVDYENGFVR 60
           METEVNDDDLLFAELTRRISLLIMDDDELPSVHTDLSRTIHRVRPGQLPLMVDYENGFVR
Sbjct: 1   METEVNDDDLLFAELTRRISLLIMDDDELPSVHTDLSRTIHRVRPGQLPLMVDYENGFVR 60

Query: 61  ESKGTGVFIPTRLPSPKRKHRNVVGYRIKSENKRLNSQPSSTYYFKPKKS 111
           ESKGTGVFIPTRLPSPKRKHRNVVGYRIKSENKRLNSQPSSTYYFKPKKS
Sbjct: 61  ESKGTGVFIPTRLPSPKRKHRNVVGYRIKSENKRLNSQPSSTYYFKPKKS 110

BLAST of CmoCh08G011360 vs. ExPASy TrEMBL
Match: A0A6J1KEC6 (uncharacterized protein LOC111494227 OS=Cucurbita maxima OX=3661 GN=LOC111494227 PE=4 SV=1)

HSP 1 Score: 213.0 bits (541), Expect = 6.3e-52
Identity = 106/110 (96.36%), Postives = 108/110 (98.18%), Query Frame = 0

Query: 1   METEVNDDDLLFAELTRRISLLIMDDDELPSVHTDLSRTIHRVRPGQLPLMVDYENGFVR 60
           METEV+DDDLLFAELTRRISLLIMDDDELPSVHTDLSRTIHRVRPGQLPLMVDY+NGFVR
Sbjct: 24  METEVDDDDLLFAELTRRISLLIMDDDELPSVHTDLSRTIHRVRPGQLPLMVDYKNGFVR 83

Query: 61  ESKGTGVFIPTRLPSPKRKHRNVVGYRIKSENKRLNSQPSSTYYFKPKKS 111
           ESKGTGVFIPTRLPSPKRKHRNVVGYRIKS N RLNSQPSSTYYFKPKKS
Sbjct: 84  ESKGTGVFIPTRLPSPKRKHRNVVGYRIKSGNTRLNSQPSSTYYFKPKKS 133

BLAST of CmoCh08G011360 vs. ExPASy TrEMBL
Match: A0A0A0KGT1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G153490 PE=4 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 3.6e-39
Identity = 85/109 (77.98%), Postives = 93/109 (85.32%), Query Frame = 0

Query: 1   METEVNDDDLLFAELTRRISLLIMDDDELPSVHTDLSRTIHRVRPGQLPLMVDYENGFVR 60
           ME EV  DDLLFAELTRRISLLIMDDDELP  HT+ +RT+H++RP +LPLM+DYENGFVR
Sbjct: 1   MEMEVESDDLLFAELTRRISLLIMDDDELPIAHTNFTRTVHQLRPRELPLMMDYENGFVR 60

Query: 61  ESKGTGVFIPTRLPSPKRKHRNV-VGYRIKSENKRLNSQPSSTYYFKPK 109
           ESKGTGVFIP RLP  KRK +NV  GYRIKSENKRLN QPS TYY KPK
Sbjct: 61  ESKGTGVFIPARLPPRKRKQKNVTAGYRIKSENKRLNGQPSPTYYCKPK 109

BLAST of CmoCh08G011360 vs. ExPASy TrEMBL
Match: A0A5A7SW60 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold111G00710 PE=4 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 9.7e-37
Identity = 83/108 (76.85%), Postives = 94/108 (87.04%), Query Frame = 0

Query: 4   EVNDDDLLFAELTRRISLLIMDDDELPSVHTDLSRTIHRVRPGQLPLMVDYENGFVRESK 63
           EV +DDLLFAELTRRISLLIMDDDELP V+T+ +RT+H++RP +LPL +DYENGFVRESK
Sbjct: 2   EVENDDLLFAELTRRISLLIMDDDELPIVNTNFTRTVHQLRPRELPLTMDYENGFVRESK 61

Query: 64  GTGVFIPTRLPSPKRKHRN-VVGYRIKSENKRLNS--QPSSTYYFKPK 109
           GTGVFIPTRLP PKRK +N  VGYRIKSENKRLN+  QPS  YY KPK
Sbjct: 62  GTGVFIPTRLPPPKRKQKNATVGYRIKSENKRLNNNRQPSPMYYCKPK 109

BLAST of CmoCh08G011360 vs. ExPASy TrEMBL
Match: A0A1S3C8R0 (uncharacterized protein LOC103497931 OS=Cucumis melo OX=3656 GN=LOC103497931 PE=4 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 9.7e-37
Identity = 83/108 (76.85%), Postives = 94/108 (87.04%), Query Frame = 0

Query: 4   EVNDDDLLFAELTRRISLLIMDDDELPSVHTDLSRTIHRVRPGQLPLMVDYENGFVRESK 63
           EV +DDLLFAELTRRISLLIMDDDELP V+T+ +RT+H++RP +LPL +DYENGFVRESK
Sbjct: 2   EVENDDLLFAELTRRISLLIMDDDELPIVNTNFTRTVHQLRPRELPLTMDYENGFVRESK 61

Query: 64  GTGVFIPTRLPSPKRKHRN-VVGYRIKSENKRLNS--QPSSTYYFKPK 109
           GTGVFIPTRLP PKRK +N  VGYRIKSENKRLN+  QPS  YY KPK
Sbjct: 62  GTGVFIPTRLPPPKRKQKNATVGYRIKSENKRLNNNRQPSPMYYCKPK 109

BLAST of CmoCh08G011360 vs. NCBI nr
Match: XP_022930457.1 (uncharacterized protein LOC111436898 [Cucurbita moschata])

HSP 1 Score: 221.5 bits (563), Expect = 3.6e-54
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 0

Query: 1   METEVNDDDLLFAELTRRISLLIMDDDELPSVHTDLSRTIHRVRPGQLPLMVDYENGFVR 60
           METEVNDDDLLFAELTRRISLLIMDDDELPSVHTDLSRTIHRVRPGQLPLMVDYENGFVR
Sbjct: 1   METEVNDDDLLFAELTRRISLLIMDDDELPSVHTDLSRTIHRVRPGQLPLMVDYENGFVR 60

Query: 61  ESKGTGVFIPTRLPSPKRKHRNVVGYRIKSENKRLNSQPSSTYYFKPKKS 111
           ESKGTGVFIPTRLPSPKRKHRNVVGYRIKSENKRLNSQPSSTYYFKPKKS
Sbjct: 61  ESKGTGVFIPTRLPSPKRKHRNVVGYRIKSENKRLNSQPSSTYYFKPKKS 110

BLAST of CmoCh08G011360 vs. NCBI nr
Match: KAG6593910.1 (hypothetical protein SDJN03_13386, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 219.9 bits (559), Expect = 1.1e-53
Identity = 109/110 (99.09%), Postives = 110/110 (100.00%), Query Frame = 0

Query: 1   METEVNDDDLLFAELTRRISLLIMDDDELPSVHTDLSRTIHRVRPGQLPLMVDYENGFVR 60
           METEVNDDDLLFAELTRRISLLIMDDDELPSVHTDLSRTIHRVRPG+LPLMVDYENGFVR
Sbjct: 1   METEVNDDDLLFAELTRRISLLIMDDDELPSVHTDLSRTIHRVRPGKLPLMVDYENGFVR 60

Query: 61  ESKGTGVFIPTRLPSPKRKHRNVVGYRIKSENKRLNSQPSSTYYFKPKKS 111
           ESKGTGVFIPTRLPSPKRKHRNVVGYRIKSENKRLNSQPSSTYYFKPKKS
Sbjct: 61  ESKGTGVFIPTRLPSPKRKHRNVVGYRIKSENKRLNSQPSSTYYFKPKKS 110

BLAST of CmoCh08G011360 vs. NCBI nr
Match: XP_023521928.1 (uncharacterized protein LOC111785772 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 218.0 bits (554), Expect = 4.0e-53
Identity = 108/110 (98.18%), Postives = 109/110 (99.09%), Query Frame = 0

Query: 1   METEVNDDDLLFAELTRRISLLIMDDDELPSVHTDLSRTIHRVRPGQLPLMVDYENGFVR 60
           METEV+DDDLLFAELTRRISLLIMDDDE PSVHTDLSRTIHRVRPGQLPLMVDYENGFVR
Sbjct: 1   METEVDDDDLLFAELTRRISLLIMDDDEFPSVHTDLSRTIHRVRPGQLPLMVDYENGFVR 60

Query: 61  ESKGTGVFIPTRLPSPKRKHRNVVGYRIKSENKRLNSQPSSTYYFKPKKS 111
           ESKGTGVFIPTRLPSPKRKHRNVVGYRIKSENKRLNSQPSSTYYFKPKKS
Sbjct: 61  ESKGTGVFIPTRLPSPKRKHRNVVGYRIKSENKRLNSQPSSTYYFKPKKS 110

BLAST of CmoCh08G011360 vs. NCBI nr
Match: XP_023515111.1 (uncharacterized protein LOC111779237 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 216.5 bits (550), Expect = 1.2e-52
Identity = 107/110 (97.27%), Postives = 108/110 (98.18%), Query Frame = 0

Query: 1   METEVNDDDLLFAELTRRISLLIMDDDELPSVHTDLSRTIHRVRPGQLPLMVDYENGFVR 60
           METEV+DDDLLFAELTRRISLLIMDDDE PSVHTDLSRTIHRVRPGQLPLMVDYENGF R
Sbjct: 1   METEVDDDDLLFAELTRRISLLIMDDDEFPSVHTDLSRTIHRVRPGQLPLMVDYENGFAR 60

Query: 61  ESKGTGVFIPTRLPSPKRKHRNVVGYRIKSENKRLNSQPSSTYYFKPKKS 111
           ESKGTGVFIPTRLPSPKRKHRNVVGYRIKSENKRLNSQPSSTYYFKPKKS
Sbjct: 61  ESKGTGVFIPTRLPSPKRKHRNVVGYRIKSENKRLNSQPSSTYYFKPKKS 110

BLAST of CmoCh08G011360 vs. NCBI nr
Match: KAG7026252.1 (Peroxiredoxin-2F, mitochondrial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 216.1 bits (549), Expect = 1.5e-52
Identity = 107/109 (98.17%), Postives = 108/109 (99.08%), Query Frame = 0

Query: 1   METEVNDDDLLFAELTRRISLLIMDDDELPSVHTDLSRTIHRVRPGQLPLMVDYENGFVR 60
           METEVNDDDLLFAELTRRISLLIMDDDELPSVHTDLSRTIHRVRPG+LPLMVDYENGFVR
Sbjct: 1   METEVNDDDLLFAELTRRISLLIMDDDELPSVHTDLSRTIHRVRPGKLPLMVDYENGFVR 60

Query: 61  ESKGTGVFIPTRLPSPKRKHRNVVGYRIKSENKRLNSQPSSTYYFKPKK 110
           ESKGTGVFIPTRLPSPKRKH NVVGYRIKSENKRLNSQPSSTYYFKPKK
Sbjct: 61  ESKGTGVFIPTRLPSPKRKHGNVVGYRIKSENKRLNSQPSSTYYFKPKK 109

BLAST of CmoCh08G011360 vs. TAIR 10
Match: AT3G06070.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G19190.1); Has 33 Blast hits to 33 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 53.5 bits (127), Expect = 1.2e-07
Identity = 35/90 (38.89%), Postives = 52/90 (57.78%), Query Frame = 0

Query: 1  METEVNDDDLLFAELTRRISLLIMDDDELPSVHTDLSRTIHRVRPGQ-----LPLMVDYE 60
          ME E+ DDD+ FA+++++++LLI D+DE   +    S +   +  G       P M+  E
Sbjct: 3  MELEL-DDDVFFADISKQLNLLITDEDEQNPISLSSSVSFQGLFRGNYQTSATPYMMYNE 62

Query: 61 N---GFVRESKGTGVFIPTRLPSPKRKHRN 83
                +RESKGTGVFIP R   P+RKH +
Sbjct: 63 QINYNVIRESKGTGVFIP-RSSQPRRKHNH 90

BLAST of CmoCh08G011360 vs. TAIR 10
Match: AT5G19190.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G06070.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 48.9 bits (115), Expect = 3.0e-06
Identity = 39/101 (38.61%), Postives = 54/101 (53.47%), Query Frame = 0

Query: 1  METEVNDDDLLFAELTRRISLLIMDDDE------LPSVHTDLS-RTIHRVRPGQLPLMVD 60
          ME E+ DDD+ FA+++++ISLLIMD+DE      L S  + LS + + R      P M  
Sbjct: 3  MELEL-DDDVFFADISKQISLLIMDEDEHLNPVSLSSSSSSLSFQGLFRGGYQTAPYMYQ 62

Query: 61 YENGFVRESKGTGVFIPTRLPSPKRKHRNVVGYRIKSENKR 95
           E     +SKGTGVFIP      +R H +    R  S N +
Sbjct: 63 QE-----QSKGTGVFIPKSSQPRRRPHHHQKQGRYSSFNAK 97

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1EQJ81.8e-54100.00uncharacterized protein LOC111436898 OS=Cucurbita moschata OX=3662 GN=LOC1114368... [more]
A0A6J1KEC66.3e-5296.36uncharacterized protein LOC111494227 OS=Cucurbita maxima OX=3661 GN=LOC111494227... [more]
A0A0A0KGT13.6e-3977.98Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G153490 PE=4 SV=1[more]
A0A5A7SW609.7e-3776.85Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A1S3C8R09.7e-3776.85uncharacterized protein LOC103497931 OS=Cucumis melo OX=3656 GN=LOC103497931 PE=... [more]
Match NameE-valueIdentityDescription
XP_022930457.13.6e-54100.00uncharacterized protein LOC111436898 [Cucurbita moschata][more]
KAG6593910.11.1e-5399.09hypothetical protein SDJN03_13386, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_023521928.14.0e-5398.18uncharacterized protein LOC111785772 [Cucurbita pepo subsp. pepo][more]
XP_023515111.11.2e-5297.27uncharacterized protein LOC111779237 [Cucurbita pepo subsp. pepo][more]
KAG7026252.11.5e-5298.17Peroxiredoxin-2F, mitochondrial [Cucurbita argyrosperma subsp. argyrosperma][more]
Match NameE-valueIdentityDescription
AT3G06070.11.2e-0738.89unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT5G19190.13.0e-0638.61unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 91..110
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 89..110
NoneNo IPR availablePANTHERPTHR34956OS05G0397300 PROTEINcoord: 1..92
NoneNo IPR availablePANTHERPTHR34956:SF2OS05G0397300 PROTEINcoord: 1..92

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh08G011360.1CmoCh08G011360.1mRNA