CmoCh08G011000 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh08G011000
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionUnknown protein
LocationCmo_Chr08: 7055218 .. 7056170 (-)
RNA-Seq ExpressionCmoCh08G011000
SyntenyCmoCh08G011000
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGAAGAAGCCGAGATTTTCTTTTCCCTAGGGTACTCCCCATCTCCTTACAAAGCAACAGCAGAAGCAGCACATGCTCCCGACACTGAATTACTGACAGCAACATTACATACTCTCATAATTTTAGCGTCATATCATACATACTAGATATTATCTTATGCATCAGACCCCCTATACTTCATATTCTCTTTTCTTTCCCTCTTCCCCATATAATGATATGAATTTTTTGATTAAATTACAATTCTAGATTTGTTGCTGAGCTTCTTTGGAGATTATAGTCCATGATTGATTTTTGTTTCGTTCTAGTAGTAAAAAAAATGAAAGCCAGAATCACATCTTACACAGTAGTTGGCATTCTGAACATATACCAATTAGTTTTGGTATATACTCTTGATCCAGAAGTCATTGAAAGTAGTTTGACTTTTTGTTACGGTCCGCTTTGGTCATTTACGTATCATCATCAGCCTCACAGTTTTAAAACATATATGGTTGGAGAGAGGTTTCCACACCCTTATAAGGAATGTTCCGTTCTCCACTCCAAGCGATGTGGGATCTCACAATCCACCTCCTATAGGGGCCAACGTCTTCGCTGGCACATCGCCCAATGTCTGGCTATGATACCATTTGTAACAGTCTAAACCCATCGCTAGTAGATATTGTCCGTTTTAGTCCGTTACATTTTGTAGTCAACCTCTTTTAAAACGCGTATGCTAGAGAGTTTTTCACATCCTTATAAGAAATACTTCGTTATCCTCTTCAACTGATGTAGTATCTCACACTTCACCCTTCCAAATTAATAGTATAAACACAAAAGCCAGACAAATCATCGGTTGTTTACATTTTAAGTTGCAGTGATTTGGGGAATTTTCTTTGAGGAACTCAGAACACATTTGTCTGGTGAAAAAGAAAAGGCTAAGAAAGTGTCTGAAAATTGTCCACAGAAAGGGTAG

mRNA sequence

ATGGAAGAAGAAGCCGAGATTTTCTTTTCCCTAGGGTACTCCCCATCTCCTTACAAAGCAACAGCAGAAGCAGCACATGCTCCCGACACTGAATTACTGACAGCAACATTACATACTCTCATAATTTTAGCAACACATTTGTCTGGTGAAAAAGAAAAGGCTAAGAAAGTGTCTGAAAATTGTCCACAGAAAGGGTAG

Coding sequence (CDS)

ATGGAAGAAGAAGCCGAGATTTTCTTTTCCCTAGGGTACTCCCCATCTCCTTACAAAGCAACAGCAGAAGCAGCACATGCTCCCGACACTGAATTACTGACAGCAACATTACATACTCTCATAATTTTAGCAACACATTTGTCTGGTGAAAAAGAAAAGGCTAAGAAAGTGTCTGAAAATTGTCCACAGAAAGGGTAG

Protein sequence

MEEEAEIFFSLGYSPSPYKATAEAAHAPDTELLTATLHTLIILATHLSGEKEKAKKVSENCPQKG
Homology
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BLAST of CmoCh08G011000 vs. NCBI nr
Match: KAG7013527.1 (hypothetical protein SDJN02_23693, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 53.5 bits (127), Expect = 7.8e-04
Identity = 33/55 (60.00%), Postives = 38/55 (69.09%), Query Frame = 0 

Query: 1  MEEEAEIFFSLGYSPSPYKATAEAAHAPDTELLTATLHTLIILATHLSGEKEKAK 56
          MEEEAE F S G+S    KATAE +HA DTELLTAT+H LIILA+ +     K K
Sbjct: 1  MEEEAESFVSRGHS-HLLKATAETSHALDTELLTATIHALIILASLILCISNKGK 54

The following BLAST results are available for this feature:
BLAST of CmoCh08G011000 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh08G011000 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh08G011000 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7013527.17.8e-0460.00hypothetical protein SDJN02_23693, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of CmoCh08G011000 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh08G011000.1CmoCh08G011000.1mRNA