CmoCh08G010700 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh08G010700
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionATBET12, putative
LocationCmo_Chr08: 6901830 .. 6902171 (+)
RNA-Seq ExpressionCmoCh08G010700
SyntenyCmoCh08G010700
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCGAATCGCAGAGACGACCCTCCGGCACCGCCGCCCGGAAGCAGCAGCCAAGCCGCCTGCAGCGCCGGGCTCCAGCCTCCCTCCAAATCAGCCGCTCCGATTGGAAGGTCGCCATCCCTCTCCTATCGCCTCTCGTATCGCCATCGTCGCCGACAGAGATCCAAAATTGGACCGCCGATTCAGGATCGATTTCTTCTTCTTCTTCTCATCATCATCATCATCATCATAAAGAATCGGAGCCGGAGAAGCCGCCAGTTTTTAAGAAATGGCAGCATCCGGCGGCGCCTTTTCATTACGATTCGGGTTCTAGGGCTCCCAGAGCATTCGTACCCGTTTAG

mRNA sequence

ATGGCCGAATCGCAGAGACGACCCTCCGGCACCGCCGCCCGGAAGCAGCAGCCAAGCCGCCTGCAGCGCCGGGCTCCAGCCTCCCTCCAAATCAGCCGCTCCGATTGGAAGGTCGCCATCCCTCTCCTATCGCCTCTCGTATCGCCATCGTCGCCGACAGAGATCCAAAATTGGACCGCCGATTCAGGATCGATTTCTTCTTCTTCTTCTCATCATCATCATCATCATCATAAAGAATCGGAGCCGGAGAAGCCGCCAGTTTTTAAGAAATGGCAGCATCCGGCGGCGCCTTTTCATTACGATTCGGGTTCTAGGGCTCCCAGAGCATTCGTACCCGTTTAG

Coding sequence (CDS)

ATGGCCGAATCGCAGAGACGACCCTCCGGCACCGCCGCCCGGAAGCAGCAGCCAAGCCGCCTGCAGCGCCGGGCTCCAGCCTCCCTCCAAATCAGCCGCTCCGATTGGAAGGTCGCCATCCCTCTCCTATCGCCTCTCGTATCGCCATCGTCGCCGACAGAGATCCAAAATTGGACCGCCGATTCAGGATCGATTTCTTCTTCTTCTTCTCATCATCATCATCATCATCATAAAGAATCGGAGCCGGAGAAGCCGCCAGTTTTTAAGAAATGGCAGCATCCGGCGGCGCCTTTTCATTACGATTCGGGTTCTAGGGCTCCCAGAGCATTCGTACCCGTTTAG

Protein sequence

MAESQRRPSGTAARKQQPSRLQRRAPASLQISRSDWKVAIPLLSPLVSPSSPTEIQNWTADSGSISSSSSHHHHHHHKESEPEKPPVFKKWQHPAAPFHYDSGSRAPRAFVPV
Homology
BLAST of CmoCh08G010700 vs. ExPASy Swiss-Prot
Match: Q6NN02 (Uncharacterized protein At4g14450, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At4g14450 PE=2 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 5.5e-08
Identity = 50/115 (43.48%), Postives = 62/115 (53.91%), Query Frame = 0

Query: 5   QRRPSGTAARKQQPSRLQRRAPASL--QISRSDWKVAIPLLSPLVSPSSPTEIQNWTADS 64
           QR  S  A+ ++Q S+LQRRAP+ +    S S+W VAIPLLSPL             A S
Sbjct: 24  QRTSSSAASNERQLSQLQRRAPSLMIKPTSFSNWNVAIPLLSPL-------------APS 83

Query: 65  GSISSSSSHHHHHHHK-----ESEPEKPPVFKKWQHPAAPFHYDSGSRAPRAFVP 113
            + S   SH     +K     E E +K PVFKKWQHPA+PF Y+     P  FVP
Sbjct: 84  LTSSFDQSHVPPPQNKTEIPVEEEVKKTPVFKKWQHPASPFCYE-----PTTFVP 120

BLAST of CmoCh08G010700 vs. ExPASy TrEMBL
Match: A0A6J1ER11 (uncharacterized protein At4g14450, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111436912 PE=4 SV=1)

HSP 1 Score: 223.0 bits (567), Expect = 6.2e-55
Identity = 113/113 (100.00%), Postives = 113/113 (100.00%), Query Frame = 0

Query: 1   MAESQRRPSGTAARKQQPSRLQRRAPASLQISRSDWKVAIPLLSPLVSPSSPTEIQNWTA 60
           MAESQRRPSGTAARKQQPSRLQRRAPASLQISRSDWKVAIPLLSPLVSPSSPTEIQNWTA
Sbjct: 1   MAESQRRPSGTAARKQQPSRLQRRAPASLQISRSDWKVAIPLLSPLVSPSSPTEIQNWTA 60

Query: 61  DSGSISSSSSHHHHHHHKESEPEKPPVFKKWQHPAAPFHYDSGSRAPRAFVPV 114
           DSGSISSSSSHHHHHHHKESEPEKPPVFKKWQHPAAPFHYDSGSRAPRAFVPV
Sbjct: 61  DSGSISSSSSHHHHHHHKESEPEKPPVFKKWQHPAAPFHYDSGSRAPRAFVPV 113

BLAST of CmoCh08G010700 vs. ExPASy TrEMBL
Match: A0A6J1KKB8 (uncharacterized protein At4g14450, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111494801 PE=4 SV=1)

HSP 1 Score: 213.0 bits (541), Expect = 6.5e-52
Identity = 111/115 (96.52%), Postives = 111/115 (96.52%), Query Frame = 0

Query: 1   MAESQRRPSGTAARKQQPSRLQRRAPASLQISRSDWKVAIPLLSPLVSPSSPTEIQNWTA 60
           MAESQRR SG AARKQQPSRLQRRAPASLQISRSDWKVAIPLLSPLVSPSSPTEIQNWTA
Sbjct: 1   MAESQRRASGAAARKQQPSRLQRRAPASLQISRSDWKVAIPLLSPLVSPSSPTEIQNWTA 60

Query: 61  DSGSISSSSS--HHHHHHHKESEPEKPPVFKKWQHPAAPFHYDSGSRAPRAFVPV 114
           DSGSISSSSS  HHHHHHHKESEPEKPPVFKKWQHPAAPFHYDSGSRAPRAFVPV
Sbjct: 61  DSGSISSSSSHHHHHHHHHKESEPEKPPVFKKWQHPAAPFHYDSGSRAPRAFVPV 115

BLAST of CmoCh08G010700 vs. ExPASy TrEMBL
Match: A0A1S3CDB1 (uncharacterized protein At4g14450, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC103499403 PE=4 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 1.0e-36
Identity = 95/128 (74.22%), Postives = 98/128 (76.56%), Query Frame = 0

Query: 1   MAESQRRPSGTAAR-KQQPSRLQRRAPASLQISRSDWKVAIPLLSPLVSPSSPTEIQNWT 60
           MA+S RR S T  R  QQPSRLQRRAPASLQI+RSDWKVAIPLLSPLVSPSSP +IQNWT
Sbjct: 1   MADSHRRTSPTTTRHPQQPSRLQRRAPASLQINRSDWKVAIPLLSPLVSPSSPKDIQNWT 60

Query: 61  ADS------GSISSSSSHHHHH--------HHKESEPEKPPVFKKWQHPAAPFHYDSGSR 114
            DS       S SSSSSHHHHH        HHKE E EK PVFKKWQHPAAPFHYDSG R
Sbjct: 61  PDSREASSASSSSSSSSHHHHHHHQHHQHQHHKEPEAEKAPVFKKWQHPAAPFHYDSGPR 120

BLAST of CmoCh08G010700 vs. ExPASy TrEMBL
Match: A0A0A0LLJ8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G190740 PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 2.2e-31
Identity = 89/123 (72.36%), Postives = 97/123 (78.86%), Query Frame = 0

Query: 1   MAESQRRPSGTAARKQQPSRLQRRAPASLQISRSDWKVAIPLLSPLVSP-SSPTEIQNW- 60
           MA+S   P+  AA    PSRLQRRAPASLQI+RSDWKVAIPLLSPLVSP SSP +I +W 
Sbjct: 1   MADS-HPPTSPAA---TPSRLQRRAPASLQINRSDWKVAIPLLSPLVSPSSSPKDIHSWS 60

Query: 61  TADS---GSISSSSSH-----HHHHHHKESEPEKPPVFKKWQHPAAPFHYDSGSRAPRAF 114
           T DS    S +SSSSH     HHHHHHKES+PEK PVFKKWQHPAAPFHYDSG+RAPR F
Sbjct: 61  TPDSRQPSSTTSSSSHHHHLLHHHHHHKESDPEKAPVFKKWQHPAAPFHYDSGARAPR-F 118

BLAST of CmoCh08G010700 vs. ExPASy TrEMBL
Match: A0A6J1CA35 (uncharacterized protein At4g14450, chloroplastic-like OS=Momordica charantia OX=3673 GN=LOC111009774 PE=4 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 1.7e-28
Identity = 84/116 (72.41%), Postives = 91/116 (78.45%), Query Frame = 0

Query: 1   MAESQRRPSGTAARK-QQPSRLQRRAPASLQISRSDWKVAIPLLSPLVSPSSPTEIQNWT 60
           MA++QRR SG  +R+ QQPSRLQRRAPASLQISRSDWKVAIPLLSPLVSPSSPTEIQN  
Sbjct: 1   MADTQRRTSGAGSRRQQQPSRLQRRAPASLQISRSDWKVAIPLLSPLVSPSSPTEIQN-- 60

Query: 61  ADSGSISSSSSHHHHHHHKESEPEKP--PVFKKWQHPAAPFHYDSGSRAPRAFVPV 114
             S   S+SS        + S+PEKP  PV KKWQHPAAPFHYDSG RAPR FVPV
Sbjct: 61  --SREPSTSS--------QGSDPEKPPVPVTKKWQHPAAPFHYDSGPRAPR-FVPV 103

BLAST of CmoCh08G010700 vs. NCBI nr
Match: XP_022930471.1 (uncharacterized protein At4g14450, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 223.0 bits (567), Expect = 1.3e-54
Identity = 113/113 (100.00%), Postives = 113/113 (100.00%), Query Frame = 0

Query: 1   MAESQRRPSGTAARKQQPSRLQRRAPASLQISRSDWKVAIPLLSPLVSPSSPTEIQNWTA 60
           MAESQRRPSGTAARKQQPSRLQRRAPASLQISRSDWKVAIPLLSPLVSPSSPTEIQNWTA
Sbjct: 1   MAESQRRPSGTAARKQQPSRLQRRAPASLQISRSDWKVAIPLLSPLVSPSSPTEIQNWTA 60

Query: 61  DSGSISSSSSHHHHHHHKESEPEKPPVFKKWQHPAAPFHYDSGSRAPRAFVPV 114
           DSGSISSSSSHHHHHHHKESEPEKPPVFKKWQHPAAPFHYDSGSRAPRAFVPV
Sbjct: 61  DSGSISSSSSHHHHHHHKESEPEKPPVFKKWQHPAAPFHYDSGSRAPRAFVPV 113

BLAST of CmoCh08G010700 vs. NCBI nr
Match: KAG6593848.1 (putative protein, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7026180.1 putative protein, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 217.6 bits (553), Expect = 5.4e-53
Identity = 113/116 (97.41%), Postives = 113/116 (97.41%), Query Frame = 0

Query: 1   MAESQRRPSGTAARKQQPSRLQRRAPASLQISRSDWKVAIPLLSPLVSPSSPTEIQNWTA 60
           MAESQRRPSGTAARKQQPSRLQRRAPASLQISRSDWKVAIPLLSPLVSPSSPTEIQNWTA
Sbjct: 1   MAESQRRPSGTAARKQQPSRLQRRAPASLQISRSDWKVAIPLLSPLVSPSSPTEIQNWTA 60

Query: 61  DSGSISSSSS---HHHHHHHKESEPEKPPVFKKWQHPAAPFHYDSGSRAPRAFVPV 114
           DSGSISSSSS   HHHHHHHKESEPEKPPVFKKWQHPAAPFHYDSGSRAPRAFVPV
Sbjct: 61  DSGSISSSSSHHHHHHHHHHKESEPEKPPVFKKWQHPAAPFHYDSGSRAPRAFVPV 116

BLAST of CmoCh08G010700 vs. NCBI nr
Match: XP_023000559.1 (uncharacterized protein At4g14450, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 213.0 bits (541), Expect = 1.3e-51
Identity = 111/115 (96.52%), Postives = 111/115 (96.52%), Query Frame = 0

Query: 1   MAESQRRPSGTAARKQQPSRLQRRAPASLQISRSDWKVAIPLLSPLVSPSSPTEIQNWTA 60
           MAESQRR SG AARKQQPSRLQRRAPASLQISRSDWKVAIPLLSPLVSPSSPTEIQNWTA
Sbjct: 1   MAESQRRASGAAARKQQPSRLQRRAPASLQISRSDWKVAIPLLSPLVSPSSPTEIQNWTA 60

Query: 61  DSGSISSSSS--HHHHHHHKESEPEKPPVFKKWQHPAAPFHYDSGSRAPRAFVPV 114
           DSGSISSSSS  HHHHHHHKESEPEKPPVFKKWQHPAAPFHYDSGSRAPRAFVPV
Sbjct: 61  DSGSISSSSSHHHHHHHHHKESEPEKPPVFKKWQHPAAPFHYDSGSRAPRAFVPV 115

BLAST of CmoCh08G010700 vs. NCBI nr
Match: XP_023515028.1 (uncharacterized protein At4g14450, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 210.7 bits (535), Expect = 6.6e-51
Identity = 108/113 (95.58%), Postives = 110/113 (97.35%), Query Frame = 0

Query: 1   MAESQRRPSGTAARKQQPSRLQRRAPASLQISRSDWKVAIPLLSPLVSPSSPTEIQNWTA 60
           MAESQRRPS TA+RKQQPSRLQRRAPASLQISRSDWKVAIPLLSPLVSPSSPTEIQNWTA
Sbjct: 1   MAESQRRPSATASRKQQPSRLQRRAPASLQISRSDWKVAIPLLSPLVSPSSPTEIQNWTA 60

Query: 61  DSGSISSSSSHHHHHHHKESEPEKPPVFKKWQHPAAPFHYDSGSRAPRAFVPV 114
           DSG+I SSS HHHHHHHKESEPEKPPVFKKWQHPAAPFHYDSGSRAPRAFVPV
Sbjct: 61  DSGAI-SSSHHHHHHHHKESEPEKPPVFKKWQHPAAPFHYDSGSRAPRAFVPV 112

BLAST of CmoCh08G010700 vs. NCBI nr
Match: XP_038875425.1 (uncharacterized protein At4g14450, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 171.0 bits (432), Expect = 5.8e-39
Identity = 94/114 (82.46%), Postives = 98/114 (85.96%), Query Frame = 0

Query: 1   MAESQRRPSGTAAR-KQQPSRLQRRAPASLQISRSDWKVAIPLLSPLVSPSSPTEIQNWT 60
           MA+S RR SG + R  QQPSRLQRRAPASLQI+RSDWKVAIPLLSPLVSPSSP +IQNWT
Sbjct: 1   MADSHRRTSGASGRHPQQPSRLQRRAPASLQINRSDWKVAIPLLSPLVSPSSPKDIQNWT 60

Query: 61  ADSGSISSSSSHHHHHHHKESEPEKPPVFKKWQHPAAPFHYDSGSRAPRAFVPV 114
            DS   SSSSS   HHHHKESEPEKPPVFKKWQHPAAPFHYDSG RAPR FVPV
Sbjct: 61  PDSREASSSSS--QHHHHKESEPEKPPVFKKWQHPAAPFHYDSGPRAPR-FVPV 111

BLAST of CmoCh08G010700 vs. TAIR 10
Match: AT1G04330.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G23170.1); Has 74 Blast hits to 74 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 74; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 65.5 bits (158), Expect = 3.2e-11
Identity = 48/113 (42.48%), Postives = 59/113 (52.21%), Query Frame = 0

Query: 1   MAESQRRPSGTAARKQQPSRLQRRAPASLQIS--RSDWKVAIPLLSPLVS-PSSPTEIQN 60
           M+ + R  SG+  RK   SRLQRRAP  L+I+   ++WKVAIPLLSP  S P  P  +  
Sbjct: 1   MSSTARNISGSGNRKS--SRLQRRAPPPLKINPCEANWKVAIPLLSPTESPPQKPPAVMK 60

Query: 61  WTADSGSISSSSSHHHHHHHKESEPEKPPVFKKWQHPAAPFHYDSGSRAPRAF 111
                                  E EKPPVFKKWQHPAAPF+Y     + + F
Sbjct: 61  ---------------REEQRWGKEAEKPPVFKKWQHPAAPFYYQPAPSSNQPF 96

BLAST of CmoCh08G010700 vs. TAIR 10
Match: AT3G23170.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G14450.1); Has 74 Blast hits to 74 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 74; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 59.3 bits (142), Expect = 2.3e-09
Identity = 44/104 (42.31%), Postives = 57/104 (54.81%), Query Frame = 0

Query: 15  KQQPSRLQRRAPASLQI----SRSDWKVAIPLLSPL-VSPSSPTEIQNWTADSGSISSSS 74
           ++QPSRL +R PA   +    + ++W  AIPLLSPL +SP S         D   +  + 
Sbjct: 18  RRQPSRLLKRPPALKIVPATPAANNWNTAIPLLSPLALSPESS------PVDQPPVEKNQ 77

Query: 75  SHHHHHHHKESEPEKPPVFKKWQHPAAPFHYDSGSRAPRAFVPV 114
           S            EK PVFKKWQHPAAPF+Y+S +  P  FVPV
Sbjct: 78  S-------TAVAVEKTPVFKKWQHPAAPFYYESSTFVP-PFVPV 107

BLAST of CmoCh08G010700 vs. TAIR 10
Match: AT4G14450.1 (unknown protein; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G23170.1); Has 74 Blast hits to 74 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 74; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 58.5 bits (140), Expect = 3.9e-09
Identity = 50/115 (43.48%), Postives = 62/115 (53.91%), Query Frame = 0

Query: 5   QRRPSGTAARKQQPSRLQRRAPASL--QISRSDWKVAIPLLSPLVSPSSPTEIQNWTADS 64
           QR  S  A+ ++Q S+LQRRAP+ +    S S+W VAIPLLSPL             A S
Sbjct: 24  QRTSSSAASNERQLSQLQRRAPSLMIKPTSFSNWNVAIPLLSPL-------------APS 83

Query: 65  GSISSSSSHHHHHHHK-----ESEPEKPPVFKKWQHPAAPFHYDSGSRAPRAFVP 113
            + S   SH     +K     E E +K PVFKKWQHPA+PF Y+     P  FVP
Sbjct: 84  LTSSFDQSHVPPPQNKTEIPVEEEVKKTPVFKKWQHPASPFCYE-----PTTFVP 120

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q6NN025.5e-0843.48Uncharacterized protein At4g14450, chloroplastic OS=Arabidopsis thaliana OX=3702... [more]
Match NameE-valueIdentityDescription
A0A6J1ER116.2e-55100.00uncharacterized protein At4g14450, chloroplastic-like OS=Cucurbita moschata OX=3... [more]
A0A6J1KKB86.5e-5296.52uncharacterized protein At4g14450, chloroplastic-like OS=Cucurbita maxima OX=366... [more]
A0A1S3CDB11.0e-3674.22uncharacterized protein At4g14450, chloroplastic-like OS=Cucumis melo OX=3656 GN... [more]
A0A0A0LLJ82.2e-3172.36Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G190740 PE=4 SV=1[more]
A0A6J1CA351.7e-2872.41uncharacterized protein At4g14450, chloroplastic-like OS=Momordica charantia OX=... [more]
Match NameE-valueIdentityDescription
XP_022930471.11.3e-54100.00uncharacterized protein At4g14450, chloroplastic-like [Cucurbita moschata][more]
KAG6593848.15.4e-5397.41putative protein, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]... [more]
XP_023000559.11.3e-5196.52uncharacterized protein At4g14450, chloroplastic-like [Cucurbita maxima][more]
XP_023515028.16.6e-5195.58uncharacterized protein At4g14450, chloroplastic-like [Cucurbita pepo subsp. pep... [more]
XP_038875425.15.8e-3982.46uncharacterized protein At4g14450, chloroplastic-like [Benincasa hispida][more]
Match NameE-valueIdentityDescription
AT1G04330.13.2e-1142.48unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT3G23170.12.3e-0942.31unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT4G14450.13.9e-0943.48unknown protein; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein matc... [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 47..113
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..29
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 47..67
NoneNo IPR availablePANTHERPTHR33912:SF2PUTATIVE-RELATEDcoord: 1..111
IPR040381Uncharacterized protein At4g14450-likePANTHERPTHR33912OS01G0939400 PROTEINcoord: 1..111

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh08G010700.1CmoCh08G010700.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005737 cytoplasm
cellular_component GO:0005634 nucleus