CmoCh08G008250 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh08G008250
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	extensin-like
Location	Cmo_Chr08: 5261088 .. 5263287 (-)
RNA-Seq Expression	CmoCh08G008250
Synteny	CmoCh08G008250

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTCCTTCCACTATAAATAACTCCACACGTCTTCTTTCTCCATCACCCAATTCCTTCTACATTCTTTTCCATTCCTTATTCTCAATGGCCGGTCAAGTTCCTCGTCCATGGTTCCGTTTGGGCTCTATGACCCGACCAACAACCGCCACAACCACCGCTCCAGTCACCGACCAACCGCGACCTGTCCCCCCTCGGATCCGCCCGCCCTTAATCCGAACCTCCTCCTTGACGGAGCTTGCAGAACCCACCACCCCCCAGCAATCTGCCAAATCGCCGCCGCAGTTACCTCGCCTAGCCCCACTAACCCCTCAGCCGAAAAAGGAAGCGTCGCCACCGCCACCGCCCCCGCCTTTGACCCGACCTGTTGTTACGTCCACTGCAGCGCCAAAACCCAGTAGCCCCAAGGGAAAAAGTCATTCGCTTGGAGGGTCTCCGCCGCGCAATGGCTCGTTTGATAAAGAAAGTAATAAACATCCCACCCCAGCTCCGTCTCCTTCTATTCCCAAGTCTATTCCGGCCGTTCCATCGCCTTATCAGTCGCCGAAGCCGAAGCCTAAAGCCACCGCTTCGCCCCCGTCGCCGCTTGTTTTACCACCGCCGCAGTTGCAGTTTGTCGCCGAGCCTAGACCTGAGACCATTCCTCAAGAGGTAGTGTTAATTTAAGTTCATTGAGATTGGTGTGTTTTTAGCATTGGCAAACTTTTGAAAATCGAGAGTAAAAATAGTAGGTTTAATGGGTCGAGGATGGTTGGGAGAGAGCATCACGTTAGTTAATTTAGGGAATGACCGTGTGTTTATAAGCAAGGAATATGTCTTTATTGGTATGAGACATTTTAAAAACCATGAGAGCTTATGCTCAAATTCGACAATATCTTACTATTATGGAGAGTGGTGATTAGTAACATATGGTTTCAGAGTCATGCCCTTAGCTTAGTCATGTCAATAGAATTCTCAAAAGTCGAACAAAGAAGTTGTAAACTTCGAGGGTATAGTCAAAAGCGACTCAAGTGTCGAACAAAGGGTGTACTTTATTCAAGGATTCCAGAGAAGGAGTCAAGCCTCAATTAAGGGGAGGTTGTTTCTCGACTCCTCCCTGTAGTCATCGAACAAAGTACACCCTTTATTCGAGGGTTCGAGGGGAGGATTGTGGAGTCCCACCTTGGCTAATTTAAGGAATAATCATGGGTTTATAAGTAAGGAATACATATTCATTGCTACGAGGCCTTTTGGATGCTCAAAGTGAACCATATCTTACCATTATGGAGAATCGTGATTTCTAACATAATCAATGAACAGGTTATCTTACTATTATGGAGAATCGTGATTTCTAACATAATCAATGAACATGTTATCTTACCATTATGGAAAATCGTGATTTCTAATATAATCAATGAACATGTTATTTTATCATTATGGAAAATCGTGATTTCTAACATAATCAATGATCAGGTAGAACGAAAGACGGTTGTTTTCCAAAAAGTGATGGAGAAGCCTTCACCGCCCGATCACGATATCAATAACTACAATTCCCAAGCATCTGGATTTGGCAAAAATGGGAAGAAACATGATGACAATCAAGACAAGGGAAATGGAGCCAAGAAACCGTTCGTGTCGTCCGGTGATAAAGACTCGAGCACAAGAGTTATAACAATGGCAGGAGAAAACAGAGGAGCTTCCATGGAAGTAGTTCTCTCAGACAAAAACAACAACAGCCGCCATCTTCAAATAAATCAAAGCGACAACGGAGACACCACCAACGATTCTAAAGACAACAAAAGTAACAAGAAATCAACGGCGTGTCGAAGTGCATGGCCAATGAAAGCTTTCTTTAACAGCAATGTTCAAGGGATTAACAATTCAATTCTGATGGACTCCAAATTCACCCACCACGACCCTGGGATTCATCTTGTCTTCTCCAAGATGCCGCCGCCATCTGCCCATCAGGAAGACGGCGGACAATAACCAAGTTGTCTTTGTTTCCTTTGATTTGTGTCTCTAAGTTCACTATCATCTGTGTTTATTTCTTTAATTTTATCCATATGTTTCTTTGACAGAATAAAATATGGGAGTTAATTGGGTGTTATAGGGTGAAAATTCTGGTTTGTTAAAGTCTAGAGTAAGGCATATTTAATAAAATGTTATGACTTTTGTTCATGTATGGACCCTATTTTTTCTATTAAAATAAAATCACTACTCGTATA

mRNA sequence

TTCCTTCCACTATAAATAACTCCACACGTCTTCTTTCTCCATCACCCAATTCCTTCTACATTCTTTTCCATTCCTTATTCTCAATGGCCGGTCAAGTTCCTCGTCCATGGTTCCGTTTGGGCTCTATGACCCGACCAACAACCGCCACAACCACCGCTCCAGTCACCGACCAACCGCGACCTGTCCCCCCTCGGATCCGCCCGCCCTTAATCCGAACCTCCTCCTTGACGGAGCTTGCAGAACCCACCACCCCCCAGCAATCTGCCAAATCGCCGCCGCAGTTACCTCGCCTAGCCCCACTAACCCCTCAGCCGAAAAAGGAAGCGTCGCCACCGCCACCGCCCCCGCCTTTGACCCGACCTGTTGTTACGTCCACTGCAGCGCCAAAACCCAGTAGCCCCAAGGGAAAAAGTCATTCGCTTGGAGGGTCTCCGCCGCGCAATGGCTCGTTTGATAAAGAAAGTAATAAACATCCCACCCCAGCTCCGTCTCCTTCTATTCCCAAGTCTATTCCGGCCGTTCCATCGCCTTATCAGTCGCCGAAGCCGAAGCCTAAAGCCACCGCTTCGCCCCCGTCGCCGCTTGTTTTACCACCGCCGCAGTTGCAGTTTGTCGCCGAGCCTAGACCTGAGACCATTCCTCAAGAGGTAGAACGAAAGACGGTTGTTTTCCAAAAAGTGATGGAGAAGCCTTCACCGCCCGATCACGATATCAATAACTACAATTCCCAAGCATCTGGATTTGGCAAAAATGGGAAGAAACATGATGACAATCAAGACAAGGGAAATGGAGCCAAGAAACCGTTCGTGTCGTCCGGTGATAAAGACTCGAGCACAAGAGTTATAACAATGGCAGGAGAAAACAGAGGAGCTTCCATGGAAGTAGTTCTCTCAGACAAAAACAACAACAGCCGCCATCTTCAAATAAATCAAAGCGACAACGGAGACACCACCAACGATTCTAAAGACAACAAAAGTAACAAGAAATCAACGGCGTGTCGAAGTGCATGGCCAATGAAAGCTTTCTTTAACAGCAATGTTCAAGGGATTAACAATTCAATTCTGATGGACTCCAAATTCACCCACCACGACCCTGGGATTCATCTTGTCTTCTCCAAGATGCCGCCGCCATCTGCCCATCAGGAAGACGGCGGACAATAACCAAGTTGTCTTTGTTTCCTTTGATTTGTGTCTCTAAGTTCACTATCATCTGTGTTTATTTCTTTAATTTTATCCATATGTTTCTTTGACAGAATAAAATATGGGAGTTAATTGGGTGTTATAGGGTGAAAATTCTGGTTTGTTAAAGTCTAGAGTAAGGCATATTTAATAAAATGTTATGACTTTTGTTCATGTATGGACCCTATTTTTTCTATTAAAATAAAATCACTACTCGTATA

Coding sequence (CDS)

ATGGCCGGTCAAGTTCCTCGTCCATGGTTCCGTTTGGGCTCTATGACCCGACCAACAACCGCCACAACCACCGCTCCAGTCACCGACCAACCGCGACCTGTCCCCCCTCGGATCCGCCCGCCCTTAATCCGAACCTCCTCCTTGACGGAGCTTGCAGAACCCACCACCCCCCAGCAATCTGCCAAATCGCCGCCGCAGTTACCTCGCCTAGCCCCACTAACCCCTCAGCCGAAAAAGGAAGCGTCGCCACCGCCACCGCCCCCGCCTTTGACCCGACCTGTTGTTACGTCCACTGCAGCGCCAAAACCCAGTAGCCCCAAGGGAAAAAGTCATTCGCTTGGAGGGTCTCCGCCGCGCAATGGCTCGTTTGATAAAGAAAGTAATAAACATCCCACCCCAGCTCCGTCTCCTTCTATTCCCAAGTCTATTCCGGCCGTTCCATCGCCTTATCAGTCGCCGAAGCCGAAGCCTAAAGCCACCGCTTCGCCCCCGTCGCCGCTTGTTTTACCACCGCCGCAGTTGCAGTTTGTCGCCGAGCCTAGACCTGAGACCATTCCTCAAGAGGTAGAACGAAAGACGGTTGTTTTCCAAAAAGTGATGGAGAAGCCTTCACCGCCCGATCACGATATCAATAACTACAATTCCCAAGCATCTGGATTTGGCAAAAATGGGAAGAAACATGATGACAATCAAGACAAGGGAAATGGAGCCAAGAAACCGTTCGTGTCGTCCGGTGATAAAGACTCGAGCACAAGAGTTATAACAATGGCAGGAGAAAACAGAGGAGCTTCCATGGAAGTAGTTCTCTCAGACAAAAACAACAACAGCCGCCATCTTCAAATAAATCAAAGCGACAACGGAGACACCACCAACGATTCTAAAGACAACAAAAGTAACAAGAAATCAACGGCGTGTCGAAGTGCATGGCCAATGAAAGCTTTCTTTAACAGCAATGTTCAAGGGATTAACAATTCAATTCTGATGGACTCCAAATTCACCCACCACGACCCTGGGATTCATCTTGTCTTCTCCAAGATGCCGCCGCCATCTGCCCATCAGGAAGACGGCGGACAATAA

Protein sequence

MAGQVPRPWFRLGSMTRPTTATTTAPVTDQPRPVPPRIRPPLIRTSSLTELAEPTTPQQSAKSPPQLPRLAPLTPQPKKEASPPPPPPPLTRPVVTSTAAPKPSSPKGKSHSLGGSPPRNGSFDKESNKHPTPAPSPSIPKSIPAVPSPYQSPKPKPKATASPPSPLVLPPPQLQFVAEPRPETIPQEVERKTVVFQKVMEKPSPPDHDINNYNSQASGFGKNGKKHDDNQDKGNGAKKPFVSSGDKDSSTRVITMAGENRGASMEVVLSDKNNNSRHLQINQSDNGDTTNDSKDNKSNKKSTACRSAWPMKAFFNSNVQGINNSILMDSKFTHHDPGIHLVFSKMPPPSAHQEDGGQ

Homology

[Close]

BLAST of CmoCh08G008250 vs. ExPASy TrEMBL
Match: A0A6J1HKY3 (extensin-like OS=Cucurbita moschata OX=3662 GN=LOC111464501 PE=4 SV=1)

HSP 1 Score: 679.5 bits (1752), Expect = 7.7e-192
Identity = 358/358 (100.00%), Postives = 358/358 (100.00%), Query Frame = 0


Query: 1   MAGQVPRPWFRLGSMTRPTTATTTAPVTDQPRPVPPRIRPPLIRTSSLTELAEPTTPQQS 60
           MAGQVPRPWFRLGSMTRPTTATTTAPVTDQPRPVPPRIRPPLIRTSSLTELAEPTTPQQS
Sbjct: 1   MAGQVPRPWFRLGSMTRPTTATTTAPVTDQPRPVPPRIRPPLIRTSSLTELAEPTTPQQS 60

Query: 61  AKSPPQLPRLAPLTPQPKKEASPPPPPPPLTRPVVTSTAAPKPSSPKGKSHSLGGSPPRN 120
           AKSPPQLPRLAPLTPQPKKEASPPPPPPPLTRPVVTSTAAPKPSSPKGKSHSLGGSPPRN
Sbjct: 61  AKSPPQLPRLAPLTPQPKKEASPPPPPPPLTRPVVTSTAAPKPSSPKGKSHSLGGSPPRN 120

Query: 121 GSFDKESNKHPTPAPSPSIPKSIPAVPSPYQSPKPKPKATASPPSPLVLPPPQLQFVAEP 180
           GSFDKESNKHPTPAPSPSIPKSIPAVPSPYQSPKPKPKATASPPSPLVLPPPQLQFVAEP
Sbjct: 121 GSFDKESNKHPTPAPSPSIPKSIPAVPSPYQSPKPKPKATASPPSPLVLPPPQLQFVAEP 180

Query: 181 RPETIPQEVERKTVVFQKVMEKPSPPDHDINNYNSQASGFGKNGKKHDDNQDKGNGAKKP 240
           RPETIPQEVERKTVVFQKVMEKPSPPDHDINNYNSQASGFGKNGKKHDDNQDKGNGAKKP
Sbjct: 181 RPETIPQEVERKTVVFQKVMEKPSPPDHDINNYNSQASGFGKNGKKHDDNQDKGNGAKKP 240

Query: 241 FVSSGDKDSSTRVITMAGENRGASMEVVLSDKNNNSRHLQINQSDNGDTTNDSKDNKSNK 300
           FVSSGDKDSSTRVITMAGENRGASMEVVLSDKNNNSRHLQINQSDNGDTTNDSKDNKSNK
Sbjct: 241 FVSSGDKDSSTRVITMAGENRGASMEVVLSDKNNNSRHLQINQSDNGDTTNDSKDNKSNK 300

Query: 301 KSTACRSAWPMKAFFNSNVQGINNSILMDSKFTHHDPGIHLVFSKMPPPSAHQEDGGQ 359
           KSTACRSAWPMKAFFNSNVQGINNSILMDSKFTHHDPGIHLVFSKMPPPSAHQEDGGQ
Sbjct: 301 KSTACRSAWPMKAFFNSNVQGINNSILMDSKFTHHDPGIHLVFSKMPPPSAHQEDGGQ 358

[Close]

BLAST of CmoCh08G008250 vs. ExPASy TrEMBL
Match: A0A6J1KIF7 (extensin-like OS=Cucurbita maxima OX=3661 GN=LOC111494246 PE=4 SV=1)

HSP 1 Score: 653.3 bits (1684), Expect = 5.9e-184
Identity = 346/358 (96.65%), Postives = 349/358 (97.49%), Query Frame = 0


Query: 1   MAGQVPRPWFRLGSMTRPTTATTTAPVTDQPRPVPPRIRPPLIRTSSLTELAEPTTPQQS 60
           MAGQVPRPWFRLGSMTRPTTATTTAPVTDQPRP PPR+RPPLIRT+SLTELAEPTTP QS
Sbjct: 1   MAGQVPRPWFRLGSMTRPTTATTTAPVTDQPRPAPPRMRPPLIRTTSLTELAEPTTPLQS 60

Query: 61  AKSPPQLPRLAPLTPQPKKEASPPPPPPPLTRPVVTSTAAPKPSSPKGKSHSLGGSPPRN 120
           AKSPPQLPRLAPLTPQPKKEASPPPPPPPLTRPVVTSTAAPKPSSPKGKSHSLGGSPPRN
Sbjct: 61  AKSPPQLPRLAPLTPQPKKEASPPPPPPPLTRPVVTSTAAPKPSSPKGKSHSLGGSPPRN 120

Query: 121 GSFDKESNKHPTPAPSPSIPKSIPAVPSPYQSPKPKPKATASPPSPLVLPPPQLQFVAEP 180
           GSFDKESNKHPTP PSPSIPKSIPAVPSPYQSPKPKPKATASPPSPLVLPPPQLQFVAEP
Sbjct: 121 GSFDKESNKHPTPVPSPSIPKSIPAVPSPYQSPKPKPKATASPPSPLVLPPPQLQFVAEP 180

Query: 181 RPETIPQEVERKTVVFQKVMEKPSPPDHDINNYNSQASGFGKNGKKHDDNQDKGNGAKKP 240
           RPETI QEVERKTVVFQKVMEKPSPPDHDINNY+SQASGFGKNGKKHDDNQDKGNGAKKP
Sbjct: 181 RPETILQEVERKTVVFQKVMEKPSPPDHDINNYHSQASGFGKNGKKHDDNQDKGNGAKKP 240

Query: 241 FVSSGDKDSSTRVITMAGENRGASMEVVLSDKNNNSRHLQINQSDNGDTTNDSKDNKSNK 300
           FVSSGDKDSSTRVITMAGENRGASMEVVLSDKNNNSRHLQ NQSD  DTTNDSKDNKSNK
Sbjct: 241 FVSSGDKDSSTRVITMAGENRGASMEVVLSDKNNNSRHLQTNQSDKEDTTNDSKDNKSNK 300

Query: 301 KSTACRSAWPMKAFFNSNVQGINNSILMDSKFTHHDPGIHLVFSKMPPPSAHQEDGGQ 359
           KSTAC SAWPMKAFFNSNVQGINNSILMDSKFTHHDPGIHLVFSKMPPPSAHQE GGQ
Sbjct: 301 KSTACSSAWPMKAFFNSNVQGINNSILMDSKFTHHDPGIHLVFSKMPPPSAHQEHGGQ 358

[Close]

BLAST of CmoCh08G008250 vs. ExPASy TrEMBL
Match: A0A6J1H2W2 (pollen-specific leucine-rich repeat extensin-like protein 1 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111459978 PE=4 SV=1)

HSP 1 Score: 366.3 bits (939), Expect = 1.4e-97
Identity = 236/376 (62.77%), Postives = 273/376 (72.61%), Query Frame = 0


Query: 1   MAGQVPRPWFRLGSMTRPTTATTTAPVTDQPRPVPPRIRPPLIRTSSLTELAEPTTPQQS 60
           MAGQ+PRPWFRLGS+TRPTT  TT   TDQPRPVP RIRPP+IRT+S TE AEPTTPQ S
Sbjct: 1   MAGQLPRPWFRLGSLTRPTTGATTGSGTDQPRPVPARIRPPVIRTASFTEPAEPTTPQPS 60

Query: 61  ----------AKSPPQLPRLAPLTPQPKKEASPPPPPPPLTRPVVTSTAAPKPSSPKGKS 120
                     A SPPQLP    LTP  KK AS  PP   +TRP + S A  K  SPKGKS
Sbjct: 61  KSPPQTPMKKAASPPQLPLPGSLTPPVKKPAS--PPAAAVTRPALPSPA--KHISPKGKS 120

Query: 121 HSLGGSPPRNGSFDKESNKHPTPAPSPSIPKSIPAVPSPYQSPKPKPKATASPPSPLVLP 180
            S+ GSP +N   +K+S+K  +P  SP +PKSIPAVP+PYQS  PKPKA ASPPSPL LP
Sbjct: 121 GSVVGSPTKNELVNKDSSKQASPVSSPLVPKSIPAVPTPYQS--PKPKAAASPPSPLTLP 180

Query: 181 PPQLQFVAEPRPETIPQEVERKTVVFQKVMEKPSPPDHDINNYNSQASGFGKNGKK---- 240
           PPQLQ V EP+ E+IPQEVERKTVVFQKVM+K S  +HDI +Y++ A+ FG+NGK+    
Sbjct: 181 PPQLQSVDEPKHESIPQEVERKTVVFQKVMDKASQGEHDITSYHTHAAEFGQNGKQEPKK 240

Query: 241 --HDDNQDKGNGAKKPFV-SSGDKD--SSTRVITMAGENRGASMEVVLSDKNNNSRHLQI 300
              D+++DK  GAKK  + SS DKD  ++TRVITMAG+N GASME+ LSDKN N      
Sbjct: 241 SDEDESKDKAIGAKKALLESSNDKDTNTNTRVITMAGKNNGASMEIFLSDKNKNK----- 300

Query: 301 NQSDNGDTTNDS-KDNKSNKKSTACRSAWPMKAFFNSNVQGINNSILMDSKFTHHDPGIH 356
               N DTTN++ KDNKS KK+   R+  PMKAFFNSNVQGINNSILMDSKFTHHDPGIH
Sbjct: 301 ----NEDTTNNNLKDNKSTKKAIRTRNGLPMKAFFNSNVQGINNSILMDSKFTHHDPGIH 360

[Close]

BLAST of CmoCh08G008250 vs. ExPASy TrEMBL
Match: A0A6J1KY68 (serine/arginine repetitive matrix protein 1 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111499277 PE=4 SV=1)

HSP 1 Score: 358.2 bits (918), Expect = 3.9e-95
Identity = 231/379 (60.95%), Postives = 268/379 (70.71%), Query Frame = 0


Query: 1   MAGQVPRPWFRLGSMTRPTTATTTAPVTDQPRPVPPRIRPPLIRTSSLTELAEPTTPQQS 60
           MA Q+PRPWFRLGS+TRPTT  TT P TDQPRPVP RIRPP+IRT+S TE AEPTTPQQS
Sbjct: 1   MAAQLPRPWFRLGSLTRPTTGATTGPGTDQPRPVPARIRPPVIRTASFTEPAEPTTPQQS 60

Query: 61  ----------AKSPPQLPRLAPLTPQPKKEASPPPPPPPLTRPVVTSTAAPKPS---SPK 120
                     A SPPQLP    LTP  KK ASPP          VT  A P P+   SPK
Sbjct: 61  KSPPQTPMKKAASPPQLPLPGSLTPPVKKAASPP-------AAAVTIPALPSPAKHISPK 120

Query: 121 GKSHSLGGSPPRNGSFDKESNKHPTPAPSPSIPKSIPAVPSPYQSPKPKPKATASPPSPL 180
           GKS S+ GSP +N   +K+S K  +P  SP +PKSIPAVP+PYQS  PKPK  ASPPSPL
Sbjct: 121 GKSGSVVGSPTKNELVNKDSRKQASPVSSPLVPKSIPAVPTPYQS--PKPKTAASPPSPL 180

Query: 181 VLPPPQLQFVAEPRPETIPQEVERKTVVFQKVMEKPSPPDHDINNYNSQASGFGKNGKK- 240
            LPPPQLQ V EP+ ETIPQ VERKTVVFQKV++K S  +HDI +Y+++A+ FG+NGK+ 
Sbjct: 181 TLPPPQLQSVDEPKHETIPQAVERKTVVFQKVIDKASQAEHDIASYHTRAAEFGQNGKQE 240

Query: 241 -----HDDNQDKGNGAKKPFV-SSGDKD--SSTRVITMAGENRGASMEVVLSDKNNNSRH 300
                 D+++DK  GA K  + SS DKD  ++T+VITMAG+N GA ME+ LSDKN N   
Sbjct: 241 PKKSDEDESKDKAIGATKALLESSNDKDTNTNTKVITMAGKNNGAFMEIFLSDKNKNK-- 300

Query: 301 LQINQSDNGDTTNDS-KDNKSNKKSTACRSAWPMKAFFNSNVQGINNSILMDSKFTHHDP 356
                  N DTTN++ KDNKS KK+   R+  PMKAFFNSNVQGINNSILMDSKFTHHDP
Sbjct: 301 -------NEDTTNNNLKDNKSTKKTIRTRNGVPMKAFFNSNVQGINNSILMDSKFTHHDP 360

[Close]

BLAST of CmoCh08G008250 vs. ExPASy TrEMBL
Match: A0A6J1H458 (pollen-specific leucine-rich repeat extensin-like protein 1 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111459978 PE=4 SV=1)

HSP 1 Score: 350.1 bits (897), Expect = 1.1e-92
Identity = 226/376 (60.11%), Postives = 263/376 (69.95%), Query Frame = 0


Query: 1   MAGQVPRPWFRLGSMTRPTTATTTAPVTDQPRPVPPRIRPPLIRTSSLTELAEPTTPQQS 60
           MAGQ+PRPWFRLGS+TRPTT  TT   TDQPRPVP RIRPP+IRT+S TE AEPTTPQ S
Sbjct: 1   MAGQLPRPWFRLGSLTRPTTGATTGSGTDQPRPVPARIRPPVIRTASFTEPAEPTTPQPS 60

Query: 61  ----------AKSPPQLPRLAPLTPQPKKEASPPPPPPPLTRPVVTSTAAPKPSSPKGKS 120
                     A SPPQLP    LTP  KK ASPP            + A  +P+ P    
Sbjct: 61  KSPPQTPMKKAASPPQLPLPGSLTPPVKKPASPP------------AAAVTRPALPSPAK 120

Query: 121 HSLGGSPPRNGSFDKESNKHPTPAPSPSIPKSIPAVPSPYQSPKPKPKATASPPSPLVLP 180
           H    SP +N   +K+S+K  +P  SP +PKSIPAVP+PYQS  PKPKA ASPPSPL LP
Sbjct: 121 HI---SPTKNELVNKDSSKQASPVSSPLVPKSIPAVPTPYQS--PKPKAAASPPSPLTLP 180

Query: 181 PPQLQFVAEPRPETIPQEVERKTVVFQKVMEKPSPPDHDINNYNSQASGFGKNGKK---- 240
           PPQLQ V EP+ E+IPQEVERKTVVFQKVM+K S  +HDI +Y++ A+ FG+NGK+    
Sbjct: 181 PPQLQSVDEPKHESIPQEVERKTVVFQKVMDKASQGEHDITSYHTHAAEFGQNGKQEPKK 240

Query: 241 --HDDNQDKGNGAKKPFV-SSGDKD--SSTRVITMAGENRGASMEVVLSDKNNNSRHLQI 300
              D+++DK  GAKK  + SS DKD  ++TRVITMAG+N GASME+ LSDKN N      
Sbjct: 241 SDEDESKDKAIGAKKALLESSNDKDTNTNTRVITMAGKNNGASMEIFLSDKNKNK----- 300

Query: 301 NQSDNGDTTNDS-KDNKSNKKSTACRSAWPMKAFFNSNVQGINNSILMDSKFTHHDPGIH 356
               N DTTN++ KDNKS KK+   R+  PMKAFFNSNVQGINNSILMDSKFTHHDPGIH
Sbjct: 301 ----NEDTTNNNLKDNKSTKKAIRTRNGLPMKAFFNSNVQGINNSILMDSKFTHHDPGIH 350

[Close]

BLAST of CmoCh08G008250 vs. NCBI nr
Match: XP_022964490.1 (extensin-like [Cucurbita moschata] >KAG6593605.1 hypothetical protein SDJN03_13081, partial [Cucurbita argyrosperma subsp. sororia] >KAG7025952.1 hypothetical protein SDJN02_12450, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 679.5 bits (1752), Expect = 1.6e-191
Identity = 358/358 (100.00%), Postives = 358/358 (100.00%), Query Frame = 0


Query: 1   MAGQVPRPWFRLGSMTRPTTATTTAPVTDQPRPVPPRIRPPLIRTSSLTELAEPTTPQQS 60
           MAGQVPRPWFRLGSMTRPTTATTTAPVTDQPRPVPPRIRPPLIRTSSLTELAEPTTPQQS
Sbjct: 1   MAGQVPRPWFRLGSMTRPTTATTTAPVTDQPRPVPPRIRPPLIRTSSLTELAEPTTPQQS 60

Query: 61  AKSPPQLPRLAPLTPQPKKEASPPPPPPPLTRPVVTSTAAPKPSSPKGKSHSLGGSPPRN 120
           AKSPPQLPRLAPLTPQPKKEASPPPPPPPLTRPVVTSTAAPKPSSPKGKSHSLGGSPPRN
Sbjct: 61  AKSPPQLPRLAPLTPQPKKEASPPPPPPPLTRPVVTSTAAPKPSSPKGKSHSLGGSPPRN 120

Query: 121 GSFDKESNKHPTPAPSPSIPKSIPAVPSPYQSPKPKPKATASPPSPLVLPPPQLQFVAEP 180
           GSFDKESNKHPTPAPSPSIPKSIPAVPSPYQSPKPKPKATASPPSPLVLPPPQLQFVAEP
Sbjct: 121 GSFDKESNKHPTPAPSPSIPKSIPAVPSPYQSPKPKPKATASPPSPLVLPPPQLQFVAEP 180

Query: 181 RPETIPQEVERKTVVFQKVMEKPSPPDHDINNYNSQASGFGKNGKKHDDNQDKGNGAKKP 240
           RPETIPQEVERKTVVFQKVMEKPSPPDHDINNYNSQASGFGKNGKKHDDNQDKGNGAKKP
Sbjct: 181 RPETIPQEVERKTVVFQKVMEKPSPPDHDINNYNSQASGFGKNGKKHDDNQDKGNGAKKP 240

Query: 241 FVSSGDKDSSTRVITMAGENRGASMEVVLSDKNNNSRHLQINQSDNGDTTNDSKDNKSNK 300
           FVSSGDKDSSTRVITMAGENRGASMEVVLSDKNNNSRHLQINQSDNGDTTNDSKDNKSNK
Sbjct: 241 FVSSGDKDSSTRVITMAGENRGASMEVVLSDKNNNSRHLQINQSDNGDTTNDSKDNKSNK 300

Query: 301 KSTACRSAWPMKAFFNSNVQGINNSILMDSKFTHHDPGIHLVFSKMPPPSAHQEDGGQ 359
           KSTACRSAWPMKAFFNSNVQGINNSILMDSKFTHHDPGIHLVFSKMPPPSAHQEDGGQ
Sbjct: 301 KSTACRSAWPMKAFFNSNVQGINNSILMDSKFTHHDPGIHLVFSKMPPPSAHQEDGGQ 358

[Close]

BLAST of CmoCh08G008250 vs. NCBI nr
Match: XP_023513718.1 (proline-rich receptor-like protein kinase PERK8 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 658.3 bits (1697), Expect = 3.8e-185
Identity = 348/358 (97.21%), Postives = 351/358 (98.04%), Query Frame = 0


Query: 1   MAGQVPRPWFRLGSMTRPTTATTTAPVTDQPRPVPPRIRPPLIRTSSLTELAEPTTPQQS 60
           MAGQVPRPWFRLGSMTRPTTATTTAP TDQPRP PPR+RPPLIRT+SLTELAEPTTPQQS
Sbjct: 1   MAGQVPRPWFRLGSMTRPTTATTTAPPTDQPRPAPPRMRPPLIRTTSLTELAEPTTPQQS 60

Query: 61  AKSPPQLPRLAPLTPQPKKEASPPPPPPPLTRPVVTSTAAPKPSSPKGKSHSLGGSPPRN 120
           AKSPPQLPRLAPLTPQPKKEASPPPPPPPLTRPVVTSTAAPKPSSPKGKSHSLGGSPPRN
Sbjct: 61  AKSPPQLPRLAPLTPQPKKEASPPPPPPPLTRPVVTSTAAPKPSSPKGKSHSLGGSPPRN 120

Query: 121 GSFDKESNKHPTPAPSPSIPKSIPAVPSPYQSPKPKPKATASPPSPLVLPPPQLQFVAEP 180
           GSFDKESNKHPTPAPSPSIPKSIPAVPSPYQSPKPKPKATASPPSPLVLPPPQLQFVAEP
Sbjct: 121 GSFDKESNKHPTPAPSPSIPKSIPAVPSPYQSPKPKPKATASPPSPLVLPPPQLQFVAEP 180

Query: 181 RPETIPQEVERKTVVFQKVMEKPSPPDHDINNYNSQASGFGKNGKKHDDNQDKGNGAKKP 240
           RPETIPQEVERKTVVFQKVMEKPSPPDHDINNYNSQASGFGKNGKKHDDNQDKGNGAKKP
Sbjct: 181 RPETIPQEVERKTVVFQKVMEKPSPPDHDINNYNSQASGFGKNGKKHDDNQDKGNGAKKP 240

Query: 241 FVSSGDKDSSTRVITMAGENRGASMEVVLSDKNNNSRHLQINQSDNGDTTNDSKDNKSNK 300
           FVSSGDKDSSTRVITMAGENRGASMEVVLSDKNNNSRHLQ NQSD  +TTNDSKDNKSNK
Sbjct: 241 FVSSGDKDSSTRVITMAGENRGASMEVVLSDKNNNSRHLQTNQSDKEETTNDSKDNKSNK 300

Query: 301 KSTACRSAWPMKAFFNSNVQGINNSILMDSKFTHHDPGIHLVFSKMPPPSAHQEDGGQ 359
           KSTA R AWPMKAFFNSNVQGINNSILMDSKFTHHDPGIHLVFSKMPPPSAHQEDGGQ
Sbjct: 301 KSTAGRGAWPMKAFFNSNVQGINNSILMDSKFTHHDPGIHLVFSKMPPPSAHQEDGGQ 358

[Close]

BLAST of CmoCh08G008250 vs. NCBI nr
Match: XP_022999909.1 (extensin-like [Cucurbita maxima])

HSP 1 Score: 653.3 bits (1684), Expect = 1.2e-183
Identity = 346/358 (96.65%), Postives = 349/358 (97.49%), Query Frame = 0


Query: 1   MAGQVPRPWFRLGSMTRPTTATTTAPVTDQPRPVPPRIRPPLIRTSSLTELAEPTTPQQS 60
           MAGQVPRPWFRLGSMTRPTTATTTAPVTDQPRP PPR+RPPLIRT+SLTELAEPTTP QS
Sbjct: 1   MAGQVPRPWFRLGSMTRPTTATTTAPVTDQPRPAPPRMRPPLIRTTSLTELAEPTTPLQS 60

Query: 61  AKSPPQLPRLAPLTPQPKKEASPPPPPPPLTRPVVTSTAAPKPSSPKGKSHSLGGSPPRN 120
           AKSPPQLPRLAPLTPQPKKEASPPPPPPPLTRPVVTSTAAPKPSSPKGKSHSLGGSPPRN
Sbjct: 61  AKSPPQLPRLAPLTPQPKKEASPPPPPPPLTRPVVTSTAAPKPSSPKGKSHSLGGSPPRN 120

Query: 121 GSFDKESNKHPTPAPSPSIPKSIPAVPSPYQSPKPKPKATASPPSPLVLPPPQLQFVAEP 180
           GSFDKESNKHPTP PSPSIPKSIPAVPSPYQSPKPKPKATASPPSPLVLPPPQLQFVAEP
Sbjct: 121 GSFDKESNKHPTPVPSPSIPKSIPAVPSPYQSPKPKPKATASPPSPLVLPPPQLQFVAEP 180

Query: 181 RPETIPQEVERKTVVFQKVMEKPSPPDHDINNYNSQASGFGKNGKKHDDNQDKGNGAKKP 240
           RPETI QEVERKTVVFQKVMEKPSPPDHDINNY+SQASGFGKNGKKHDDNQDKGNGAKKP
Sbjct: 181 RPETILQEVERKTVVFQKVMEKPSPPDHDINNYHSQASGFGKNGKKHDDNQDKGNGAKKP 240

Query: 241 FVSSGDKDSSTRVITMAGENRGASMEVVLSDKNNNSRHLQINQSDNGDTTNDSKDNKSNK 300
           FVSSGDKDSSTRVITMAGENRGASMEVVLSDKNNNSRHLQ NQSD  DTTNDSKDNKSNK
Sbjct: 241 FVSSGDKDSSTRVITMAGENRGASMEVVLSDKNNNSRHLQTNQSDKEDTTNDSKDNKSNK 300

Query: 301 KSTACRSAWPMKAFFNSNVQGINNSILMDSKFTHHDPGIHLVFSKMPPPSAHQEDGGQ 359
           KSTAC SAWPMKAFFNSNVQGINNSILMDSKFTHHDPGIHLVFSKMPPPSAHQE GGQ
Sbjct: 301 KSTACSSAWPMKAFFNSNVQGINNSILMDSKFTHHDPGIHLVFSKMPPPSAHQEHGGQ 358

[Close]

BLAST of CmoCh08G008250 vs. NCBI nr
Match: KAG7013807.1 (hypothetical protein SDJN02_23974, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 366.3 bits (939), Expect = 3.0e-97
Identity = 236/376 (62.77%), Postives = 273/376 (72.61%), Query Frame = 0


Query: 1   MAGQVPRPWFRLGSMTRPTTATTTAPVTDQPRPVPPRIRPPLIRTSSLTELAEPTTPQQS 60
           MAGQ+PRPWFRLGS+TRPTT  TT   TDQPRPVP RIRPP+IRT+S TE AEPTTPQ S
Sbjct: 1   MAGQLPRPWFRLGSLTRPTTGATTGSGTDQPRPVPARIRPPVIRTASFTEPAEPTTPQPS 60

Query: 61  ----------AKSPPQLPRLAPLTPQPKKEASPPPPPPPLTRPVVTSTAAPKPSSPKGKS 120
                     A SPPQLP    LTP  KK AS  PP   +TRP + S A  K  SPKGKS
Sbjct: 61  KSPPQTPMKKAASPPQLPLPGSLTPPVKKPAS--PPAAAVTRPALPSPA--KHISPKGKS 120

Query: 121 HSLGGSPPRNGSFDKESNKHPTPAPSPSIPKSIPAVPSPYQSPKPKPKATASPPSPLVLP 180
            S+ GSP +N   +K+S+K  +P  SP +PKSIPAVP+PYQS  PKPKA ASPPSPL LP
Sbjct: 121 GSVVGSPTKNELVNKDSSKQASPVSSPLVPKSIPAVPTPYQS--PKPKAAASPPSPLTLP 180

Query: 181 PPQLQFVAEPRPETIPQEVERKTVVFQKVMEKPSPPDHDINNYNSQASGFGKNGKK---- 240
           PPQLQ V EP+ E+IPQEVERKTVVFQKVM+K S  +HDI +Y++ A+ FG+NGK+    
Sbjct: 181 PPQLQSVDEPKHESIPQEVERKTVVFQKVMDKASQGEHDITSYHTHAAEFGQNGKQEPKK 240

Query: 241 --HDDNQDKGNGAKKPFV-SSGDKD--SSTRVITMAGENRGASMEVVLSDKNNNSRHLQI 300
              D+++DK  GAKK  + SS DKD  ++TRVITMAG+N GASME+ LSDKN N      
Sbjct: 241 SDEDESKDKAIGAKKALLESSNDKDTNTNTRVITMAGKNNGASMEIFLSDKNKNK----- 300

Query: 301 NQSDNGDTTNDS-KDNKSNKKSTACRSAWPMKAFFNSNVQGINNSILMDSKFTHHDPGIH 356
               N DTTN++ KDNKS KK+   R+  PMKAFFNSNVQGINNSILMDSKFTHHDPGIH
Sbjct: 301 ----NEDTTNNNLKDNKSTKKTIRTRNGLPMKAFFNSNVQGINNSILMDSKFTHHDPGIH 360

[Close]

BLAST of CmoCh08G008250 vs. NCBI nr
Match: XP_022958822.1 (pollen-specific leucine-rich repeat extensin-like protein 1 isoform X1 [Cucurbita moschata])

HSP 1 Score: 366.3 bits (939), Expect = 3.0e-97
Identity = 236/376 (62.77%), Postives = 273/376 (72.61%), Query Frame = 0


Query: 1   MAGQVPRPWFRLGSMTRPTTATTTAPVTDQPRPVPPRIRPPLIRTSSLTELAEPTTPQQS 60
           MAGQ+PRPWFRLGS+TRPTT  TT   TDQPRPVP RIRPP+IRT+S TE AEPTTPQ S
Sbjct: 1   MAGQLPRPWFRLGSLTRPTTGATTGSGTDQPRPVPARIRPPVIRTASFTEPAEPTTPQPS 60

Query: 61  ----------AKSPPQLPRLAPLTPQPKKEASPPPPPPPLTRPVVTSTAAPKPSSPKGKS 120
                     A SPPQLP    LTP  KK AS  PP   +TRP + S A  K  SPKGKS
Sbjct: 61  KSPPQTPMKKAASPPQLPLPGSLTPPVKKPAS--PPAAAVTRPALPSPA--KHISPKGKS 120

Query: 121 HSLGGSPPRNGSFDKESNKHPTPAPSPSIPKSIPAVPSPYQSPKPKPKATASPPSPLVLP 180
            S+ GSP +N   +K+S+K  +P  SP +PKSIPAVP+PYQS  PKPKA ASPPSPL LP
Sbjct: 121 GSVVGSPTKNELVNKDSSKQASPVSSPLVPKSIPAVPTPYQS--PKPKAAASPPSPLTLP 180

Query: 181 PPQLQFVAEPRPETIPQEVERKTVVFQKVMEKPSPPDHDINNYNSQASGFGKNGKK---- 240
           PPQLQ V EP+ E+IPQEVERKTVVFQKVM+K S  +HDI +Y++ A+ FG+NGK+    
Sbjct: 181 PPQLQSVDEPKHESIPQEVERKTVVFQKVMDKASQGEHDITSYHTHAAEFGQNGKQEPKK 240

Query: 241 --HDDNQDKGNGAKKPFV-SSGDKD--SSTRVITMAGENRGASMEVVLSDKNNNSRHLQI 300
              D+++DK  GAKK  + SS DKD  ++TRVITMAG+N GASME+ LSDKN N      
Sbjct: 241 SDEDESKDKAIGAKKALLESSNDKDTNTNTRVITMAGKNNGASMEIFLSDKNKNK----- 300

Query: 301 NQSDNGDTTNDS-KDNKSNKKSTACRSAWPMKAFFNSNVQGINNSILMDSKFTHHDPGIH 356
               N DTTN++ KDNKS KK+   R+  PMKAFFNSNVQGINNSILMDSKFTHHDPGIH
Sbjct: 301 ----NEDTTNNNLKDNKSTKKAIRTRNGLPMKAFFNSNVQGINNSILMDSKFTHHDPGIH 360

[Close]

BLAST of CmoCh08G008250 vs. TAIR 10
Match: AT2G46630.1 (unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 110095 Blast hits to 59224 proteins in 2216 species: Archae - 177; Bacteria - 15429; Metazoa - 38345; Fungi - 18843; Plants - 13341; Viruses - 3084; Other Eukaryotes - 20876 (source: NCBI BLink). )

HSP 1 Score: 90.5 bits (223), Expect = 2.9e-18
Identity = 120/384 (31.25%), Postives = 170/384 (44.27%), Query Frame = 0


Query: 7   RPWFRLGSMTRPTTATTTAPVTDQPRPVPPR---IRPPLIRTSSLTELAEPTTPQQSAKS 66
           RPWFRL S+ RPT   ++ P   QPRP       +RPP  + S   +    + P+Q    
Sbjct: 5   RPWFRLSSIARPTAQGSSDPPPPQPRPTSRSSLVVRPPAKQPSPPRQRQPRSPPRQQDPP 64

Query: 67  PPQLPRLAPLTPQPKKEASPPPPP---PPLTRPVVTSTAAPKPSSPKGKSHSLGGSPPRN 126
            P   +  PLTP P+++A P  PP    P   P     + P P     K+ +    PPR+
Sbjct: 65  SPPRQQQQPLTP-PRQKAPPTSPPQERSPYHSPPSRHMSPPTPP----KAATPPPPPPRS 124

Query: 127 GSFDKESNKHPTPAPSPSIPKSIPAVPSPYQSPKPKPKATASP---------PSPLVLPP 186
                 S K    A  P  P S P+     +S   +   T SP         PSP VL P
Sbjct: 125 SYTSPPSPKEVQEALPPRKPNSPPSPAHSSRSTTSESVKTRSPSESENHRKAPSPRVLSP 184

Query: 187 PQLQFVAEPRPETI---PQEVERKTVVFQKVMEKPSPPDHDINNYN---SQASGFGKNGK 246
             L       P ++    +E  +K ++  +   +    +H   N+N   +Q   + +N  
Sbjct: 185 YSL-------PASLLHSERETTQKNILTAEKTSQTHETNHHNQNHNHDYNQNHNYNQNHS 244

Query: 247 KHDDNQDKGNGAKK----PFVSSGDKDSSTRVITMAGENRGASMEVVLSDKNNNS----- 306
            + +   +GN  KK    P  S  +   STRVIT+AGEN+GA ME++ S + N +     
Sbjct: 245 YNQNQNHQGNNPKKMHRQPSSSDSENIMSTRVITIAGENKGAVMEILRSPQGNKTGGSGT 304

Query: 307 -------------RHLQINQSDNGDTTNDSKDNKSNKKSTACRSAWPMKAFFNSNVQGIN 348
                        R LQ + S + D     K    N  +    S  PMKAF NSNVQ IN
Sbjct: 305 HSSRVSHGTGEKGRRLQSSSSSSSDEGEGKKKTTKNVPNKG-NSNLPMKAFMNSNVQMIN 364

The following BLAST results are available for this feature:

BLAST of CmoCh08G008250 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh08G008250 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HKY3	7.7e-192	100.00	extensin-like OS=Cucurbita moschata OX=3662 GN=LOC111464501 PE=4 SV=1	[more]
A0A6J1KIF7	5.9e-184	96.65	extensin-like OS=Cucurbita maxima OX=3661 GN=LOC111494246 PE=4 SV=1	[more]
A0A6J1H2W2	1.4e-97	62.77	pollen-specific leucine-rich repeat extensin-like protein 1 isoform X1 OS=Cucurb...	[more]
A0A6J1KY68	3.9e-95	60.95	serine/arginine repetitive matrix protein 1 isoform X1 OS=Cucurbita maxima OX=36...	[more]
A0A6J1H458	1.1e-92	60.11	pollen-specific leucine-rich repeat extensin-like protein 1 isoform X2 OS=Cucurb...	[more]

BLAST of CmoCh08G008250 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022964490.1	1.6e-191	100.00	extensin-like [Cucurbita moschata] >KAG6593605.1 hypothetical protein SDJN03_130...	[more]
XP_023513718.1	3.8e-185	97.21	proline-rich receptor-like protein kinase PERK8 [Cucurbita pepo subsp. pepo]	[more]
XP_022999909.1	1.2e-183	96.65	extensin-like [Cucurbita maxima]	[more]
KAG7013807.1	3.0e-97	62.77	hypothetical protein SDJN02_23974, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022958822.1	3.0e-97	62.77	pollen-specific leucine-rich repeat extensin-like protein 1 isoform X1 [Cucurbit...	[more]

BLAST of CmoCh08G008250 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G46630.1	2.9e-18	31.25	unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXP...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 68..94
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 48..65
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 97..117
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 267..289
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 184..205
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..304
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 133..177
None	No IPR available	PANTHER	PTHR33472:SF1	EXTENSIN-RELATED	coord: 4..348
None	No IPR available	PANTHER	PTHR33472	OS01G0106600 PROTEIN	coord: 4..348

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh08G008250.1	CmoCh08G008250.1	mRNA