CmoCh08G007530 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh08G007530
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Unknown protein
Location	Cmo_Chr08: 4764753 .. 4765410 (-)
RNA-Seq Expression	CmoCh08G007530
Synteny	CmoCh08G007530

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTCTCGGTGTACAGCTGTTGCTTCCTGCACTGTCGAAGTCTCCGTGCATTCTGAACAGCGGCGGTGGCGGTGGCGGTGGTGGCGGAGGAATGAGATGGAATGGTGAATCACAGCCAATGCGCGTATTGTATTCTTCATCGTTTAAGCTGCTCAGTCTCTCAAGCTCCATTGGAGGATCGTTGGGTTTGAGGAGGTGATTTTGATGTTCGATCTCTGGTTTAGGTTCTGAGGTGACGATTGTTGGTGGAGGTTCGGACTGTACTTTTTTGGCTTTTCCTTTCTTGGAAGGAAATAGATTTTGTAGAACTGGTGGTGGGAGCGGCGGAGGCGGCGGGGGTGACGGTAGTGGTAATGATGATGATGTTGAAGCGCGTAGAGTGGCGATAGCCTCAAAGCTTTCGACGCTCTTCTGTCTTTGCTTTTTCTTCCTCCTCCTCAGAGTGGACCAAATTTCTTTTGGAGCGCCACCTCTCTTCTTCTCGTTTTTGCCGCTCTTCTGCTCCGATTCCTGATAGAACGACGGCGGGGAGAGTGGTGGAAGGTGAATCCGTTGAAAATCGGCGACGTCCGAATCGTCATTCTTCTGCTGTTGATCGATTGCTCCATCGGGCGTATGGCTATGGACGTTATGCGTTCTCTTTGGCCTTCGTTTAA

mRNA sequence

ATGGCTCTCGGTGTACAGCTGTTGCTTCCTGCACTGTCGAAGTCTCCGTGCATTCTGAACAGCGGCGGTGGCGGTGGCGGTGGTGGCGGAGGAATGAGATGGAATGGTGAATCACAGCCAATGCGCGTATTGTATTCTTCATCGTTTAAGCTGCTCAGTCTCTCAAGCTCCATTGGAGGATCGTTGGGTTTGAGGAGAACTGGTGGTGGGAGCGGCGGAGGCGGCGGGGGTGACGGTAGTGGTAATGATGATGATGTTGAAGCGCAGTGGACCAAATTTCTTTTGGAGCGCCACCTCTCTTCTTCTCGTTTTTGCCGCTCTTCTGCTCCGATTCCTGATAGAACGACGGCGGGGAGAGTGGTGGAAGGTGAATCCGTTGAAAATCGGCGACGTCCGAATCGTCATTCTTCTGCTGTTGATCGATTGCTCCATCGGGCGTATGGCTATGGACGTTATGCGTTCTCTTTGGCCTTCGTTTAA

Coding sequence (CDS)

ATGGCTCTCGGTGTACAGCTGTTGCTTCCTGCACTGTCGAAGTCTCCGTGCATTCTGAACAGCGGCGGTGGCGGTGGCGGTGGTGGCGGAGGAATGAGATGGAATGGTGAATCACAGCCAATGCGCGTATTGTATTCTTCATCGTTTAAGCTGCTCAGTCTCTCAAGCTCCATTGGAGGATCGTTGGGTTTGAGGAGAACTGGTGGTGGGAGCGGCGGAGGCGGCGGGGGTGACGGTAGTGGTAATGATGATGATGTTGAAGCGCAGTGGACCAAATTTCTTTTGGAGCGCCACCTCTCTTCTTCTCGTTTTTGCCGCTCTTCTGCTCCGATTCCTGATAGAACGACGGCGGGGAGAGTGGTGGAAGGTGAATCCGTTGAAAATCGGCGACGTCCGAATCGTCATTCTTCTGCTGTTGATCGATTGCTCCATCGGGCGTATGGCTATGGACGTTATGCGTTCTCTTTGGCCTTCGTTTAA

Protein sequence

MALGVQLLLPALSKSPCILNSGGGGGGGGGGMRWNGESQPMRVLYSSSFKLLSLSSSIGGSLGLRRTGGGSGGGGGGDGSGNDDDVEAQWTKFLLERHLSSSRFCRSSAPIPDRTTAGRVVEGESVENRRRPNRHSSAVDRLLHRAYGYGRYAFSLAFV

Homology

[Close]

BLAST of CmoCh08G007530 vs. ExPASy TrEMBL
Match: A0A0A0K7V2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G450665 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 2.8e-16
Identity = 52/61 (85.25%), Postives = 55/61 (90.16%), Query Frame = 0


Query: 1   MALGVQLLLPALSKSPCILNSGGGGGGGGGGMRWNGESQPMRVLYSSSFKLLSLSSSIGG 60
           MALGV LLLPALSKSPCILN GGGGGGGGGG+ W G+S PM VLYSSSFKLL+LSSSIGG
Sbjct: 94  MALGVLLLLPALSKSPCILN-GGGGGGGGGGIGWYGDSPPMLVLYSSSFKLLNLSSSIGG 153

Query: 61  S 62
           S
Sbjct: 154 S 153

The following BLAST results are available for this feature:

BLAST of CmoCh08G007530 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh08G007530 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K7V2	2.8e-16	85.25	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G450665 PE=4 SV=1	[more]

BLAST of CmoCh08G007530 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

BLAST of CmoCh08G007530 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 106..135
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 63..85

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh08G007530.1	CmoCh08G007530.1	mRNA