CmoCh08G006350 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh08G006350
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
Descriptionlate embryogenesis abundant protein 1
LocationCmo_Chr08: 4138537 .. 4139037 (+)
RNA-Seq ExpressionCmoCh08G006350
SyntenyCmoCh08G006350
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAAGCCAACAAGACATTAGCCACAGCGTCGGCGAGGCCGTCGGCCAAGCTCAGGTAGTTTACCGCAACCAAATCGATATCAAACGCAGCCGTTTAGAACATATTATATATTTCAATTATTGTGTCAGGTGAAGAAGGATGAGGTCATCAACCAAGCAGCTAATTCAGCTCAAGAAGCAAAAGACAGCGCATCTACTACCCTTGATCAATCCTCAGCTGCCCAAACTGCCTCTGACCTCAAGGACCAAGCTGCAAATTTCCTTCAACAGGCAAATTTGTTATTGGAAAAAACTATATTTTAAAAAATTTGCAAATGGGTCCTTACAAAATTGCTTATTTATTTATTTTGATATGGTTTAGACTGGAGAGCAAGTGAAGAACATGGCTCAAGGAGCAGCTGAGGCAGTGAAAAACACTCTTGGGATGAACACTGATAGCAGTTCTAACGCCGCCGCCAACACCAACAACCCTACCAACACTCCATCCCCTACAATCTAA

mRNA sequence

ATGGCAAGCCAACAAGACATTAGCCACAGCGTCGGCGAGGCCGTCGGCCAAGCTCAGGTGAAGAAGGATGAGGTCATCAACCAAGCAGCTAATTCAGCTCAAGAAGCAAAAGACAGCGCATCTACTACCCTTGATCAATCCTCAGCTGCCCAAACTGCCTCTGACCTCAAGGACCAAGCTGCAAATTTCCTTCAACAGACTGGAGAGCAAGTGAAGAACATGGCTCAAGGAGCAGCTGAGGCAGTGAAAAACACTCTTGGGATGAACACTGATAGCAGTTCTAACGCCGCCGCCAACACCAACAACCCTACCAACACTCCATCCCCTACAATCTAA

Coding sequence (CDS)

ATGGCAAGCCAACAAGACATTAGCCACAGCGTCGGCGAGGCCGTCGGCCAAGCTCAGGTGAAGAAGGATGAGGTCATCAACCAAGCAGCTAATTCAGCTCAAGAAGCAAAAGACAGCGCATCTACTACCCTTGATCAATCCTCAGCTGCCCAAACTGCCTCTGACCTCAAGGACCAAGCTGCAAATTTCCTTCAACAGACTGGAGAGCAAGTGAAGAACATGGCTCAAGGAGCAGCTGAGGCAGTGAAAAACACTCTTGGGATGAACACTGATAGCAGTTCTAACGCCGCCGCCAACACCAACAACCCTACCAACACTCCATCCCCTACAATCTAA

Protein sequence

MASQQDISHSVGEAVGQAQVKKDEVINQAANSAQEAKDSASTTLDQSSAAQTASDLKDQAANFLQQTGEQVKNMAQGAAEAVKNTLGMNTDSSSNAAANTNNPTNTPSPTI
Homology
BLAST of CmoCh08G006350 vs. ExPASy Swiss-Prot
Match: O49816 (Late embryogenesis abundant protein 1 OS=Cicer arietinum OX=3827 PE=2 SV=1)

HSP 1 Score: 45.1 bits (105), Expect = 6.2e-04
Identity = 38/104 (36.54%), Postives = 52/104 (50.00%), Query Frame = 0

Query: 3   SQQDISHSVGEAVGQAQVKKDEVINQAANSAQEAKDSASTTLDQ-----SSAAQTASDLK 62
           +QQ    +  E    AQ  KD+       + ++A+D+     ++      S  +TA   K
Sbjct: 72  TQQTAQAAKDETQQTAQAAKDKTQQTTEATKEKAQDTTGRAREKGSEMGQSTKETAQSGK 131

Query: 63  DQAANFLQQTGEQVKNMAQGAAEAVKNTLGMNTDSSSNAAANTN 102
           D +A FLQQTGE+VK MAQGA +AVK T GM  D        TN
Sbjct: 132 DNSAGFLQQTGEKVKGMAQGATDAVKQTFGMANDDKDKDHFPTN 175

BLAST of CmoCh08G006350 vs. ExPASy TrEMBL
Match: A0A6J1HHY8 (late embryogenesis abundant protein 1 OS=Cucurbita moschata OX=3662 GN=LOC111464504 PE=4 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 1.2e-45
Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = 0

Query: 1   MASQQDISHSVGEAVGQAQVKKDEVINQAANSAQEAKDSASTTLDQSSAAQTASDLKDQA 60
           MASQQDISHSVGEAVGQAQVKKDEVINQAANSAQEAKDSASTTLDQSSAAQTASDLKDQA
Sbjct: 1   MASQQDISHSVGEAVGQAQVKKDEVINQAANSAQEAKDSASTTLDQSSAAQTASDLKDQA 60

Query: 61  ANFLQQTGEQVKNMAQGAAEAVKNTLGMNTDSSSNAAANTNNPTNTPSPTI 112
           ANFLQQTGEQVKNMAQGAAEAVKNTLGMNTDSSSNAAANTNNPTNTPSPTI
Sbjct: 61  ANFLQQTGEQVKNMAQGAAEAVKNTLGMNTDSSSNAAANTNNPTNTPSPTI 111

BLAST of CmoCh08G006350 vs. ExPASy TrEMBL
Match: A0A6J1KJU5 (late embryogenesis abundant protein 1 OS=Cucurbita maxima OX=3661 GN=LOC111494669 PE=4 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 1.7e-44
Identity = 108/111 (97.30%), Postives = 110/111 (99.10%), Query Frame = 0

Query: 1   MASQQDISHSVGEAVGQAQVKKDEVINQAANSAQEAKDSASTTLDQSSAAQTASDLKDQA 60
           MASQQDISHSVGE VGQAQVKKDEV+NQAAN+AQEAKDSASTTLDQSSAAQTASDLKDQA
Sbjct: 1   MASQQDISHSVGEVVGQAQVKKDEVMNQAANAAQEAKDSASTTLDQSSAAQTASDLKDQA 60

Query: 61  ANFLQQTGEQVKNMAQGAAEAVKNTLGMNTDSSSNAAANTNNPTNTPSPTI 112
           ANFLQQTGEQVKNMAQGAAEAVKNTLGMNTDSSSNAAANTNNPTNTPSPTI
Sbjct: 61  ANFLQQTGEQVKNMAQGAAEAVKNTLGMNTDSSSNAAANTNNPTNTPSPTI 111

BLAST of CmoCh08G006350 vs. ExPASy TrEMBL
Match: A0A0A0K8V2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G433240 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 2.1e-23
Identity = 75/114 (65.79%), Postives = 85/114 (74.56%), Query Frame = 0

Query: 1   MASQQDISHSVGEAVGQAQVKKDEVINQAANSAQEAKDSASTTLDQSSAAQTASDLKDQA 60
           MAS QD+SH   E VGQAQVK+DE++NQ             TT DQSSAAQTA+DLKDQA
Sbjct: 1   MASHQDLSHKADEIVGQAQVKRDEMMNQ------------PTTQDQSSAAQTATDLKDQA 60

Query: 61  ANFLQQTGEQVKNMAQGAAEAVKNTLGMNTDSSSN------AAANTNNPTNTPS 109
           A+FLQQTGEQVKNMAQGAAEAVKNTLGMNTD++SN      A  + NNPTN P+
Sbjct: 61  ASFLQQTGEQVKNMAQGAAEAVKNTLGMNTDNTSNTNTHNPANNSANNPTNNPA 102

BLAST of CmoCh08G006350 vs. ExPASy TrEMBL
Match: A0A6J1GQ03 (late embryogenesis abundant protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC111456481 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 2.1e-23
Identity = 74/110 (67.27%), Postives = 85/110 (77.27%), Query Frame = 0

Query: 1   MASQQDISHSVGEAVGQAQVKKDEVINQAANSAQEAKDSASTTLDQSSAAQTASDLKDQA 60
           MASQQD+S   GE VGQAQVKKDEV++Q           A++T D  SAAQTA+DLKDQA
Sbjct: 1   MASQQDLSFKAGETVGQAQVKKDEVMSQ-----------ATSTQDAQSAAQTATDLKDQA 60

Query: 61  ANFLQQTGEQVKNMAQGAAEAVKNTLGMNTDSSSNAAANTNNPTNTPSPT 111
           A+FLQQTGEQVK+MAQGAAEAVKNTLGM TD+ +  + N NNPTN PSPT
Sbjct: 61  ASFLQQTGEQVKSMAQGAAEAVKNTLGMKTDTDTTTSPN-NNPTNNPSPT 98

BLAST of CmoCh08G006350 vs. ExPASy TrEMBL
Match: A0A6J1JRF1 (late embryogenesis abundant protein 1-like OS=Cucurbita maxima OX=3661 GN=LOC111488219 PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 3.6e-23
Identity = 72/111 (64.86%), Postives = 84/111 (75.68%), Query Frame = 0

Query: 1   MASQQDISHSVGEAVGQAQVKKDEVINQAANSAQEAKDSASTTLDQSSAAQTASDLKDQA 60
           MASQQD+S+  GE VGQAQ  KD++++Q            ++T D  SAAQTA+DLKDQA
Sbjct: 1   MASQQDLSYKAGETVGQAQASKDDIMSQ-----------LTSTQDAQSAAQTATDLKDQA 60

Query: 61  ANFLQQTGEQVKNMAQGAAEAVKNTLGMNTDSSSNAAANTNNPTNTPSPTI 112
           ANFLQQTGEQVK+MAQGAAEAVKNTLGM TD+ +  A N NNPTN PSPTI
Sbjct: 61  ANFLQQTGEQVKSMAQGAAEAVKNTLGMKTDTDTTTAPN-NNPTNNPSPTI 99

BLAST of CmoCh08G006350 vs. NCBI nr
Match: XP_022964497.1 (late embryogenesis abundant protein 1 [Cucurbita moschata])

HSP 1 Score: 192.2 bits (487), Expect = 2.4e-45
Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = 0

Query: 1   MASQQDISHSVGEAVGQAQVKKDEVINQAANSAQEAKDSASTTLDQSSAAQTASDLKDQA 60
           MASQQDISHSVGEAVGQAQVKKDEVINQAANSAQEAKDSASTTLDQSSAAQTASDLKDQA
Sbjct: 1   MASQQDISHSVGEAVGQAQVKKDEVINQAANSAQEAKDSASTTLDQSSAAQTASDLKDQA 60

Query: 61  ANFLQQTGEQVKNMAQGAAEAVKNTLGMNTDSSSNAAANTNNPTNTPSPTI 112
           ANFLQQTGEQVKNMAQGAAEAVKNTLGMNTDSSSNAAANTNNPTNTPSPTI
Sbjct: 61  ANFLQQTGEQVKNMAQGAAEAVKNTLGMNTDSSSNAAANTNNPTNTPSPTI 111

BLAST of CmoCh08G006350 vs. NCBI nr
Match: KAG6593431.1 (hypothetical protein SDJN03_12907, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 190.7 bits (483), Expect = 7.0e-45
Identity = 110/111 (99.10%), Postives = 110/111 (99.10%), Query Frame = 0

Query: 1   MASQQDISHSVGEAVGQAQVKKDEVINQAANSAQEAKDSASTTLDQSSAAQTASDLKDQA 60
           MASQQDISHSVGEAVGQAQVKKDEVINQAANSAQEAKDS STTLDQSSAAQTASDLKDQA
Sbjct: 1   MASQQDISHSVGEAVGQAQVKKDEVINQAANSAQEAKDSTSTTLDQSSAAQTASDLKDQA 60

Query: 61  ANFLQQTGEQVKNMAQGAAEAVKNTLGMNTDSSSNAAANTNNPTNTPSPTI 112
           ANFLQQTGEQVKNMAQGAAEAVKNTLGMNTDSSSNAAANTNNPTNTPSPTI
Sbjct: 61  ANFLQQTGEQVKNMAQGAAEAVKNTLGMNTDSSSNAAANTNNPTNTPSPTI 111

BLAST of CmoCh08G006350 vs. NCBI nr
Match: XP_023000409.1 (late embryogenesis abundant protein 1 [Cucurbita maxima])

HSP 1 Score: 188.3 bits (477), Expect = 3.5e-44
Identity = 108/111 (97.30%), Postives = 110/111 (99.10%), Query Frame = 0

Query: 1   MASQQDISHSVGEAVGQAQVKKDEVINQAANSAQEAKDSASTTLDQSSAAQTASDLKDQA 60
           MASQQDISHSVGE VGQAQVKKDEV+NQAAN+AQEAKDSASTTLDQSSAAQTASDLKDQA
Sbjct: 1   MASQQDISHSVGEVVGQAQVKKDEVMNQAANAAQEAKDSASTTLDQSSAAQTASDLKDQA 60

Query: 61  ANFLQQTGEQVKNMAQGAAEAVKNTLGMNTDSSSNAAANTNNPTNTPSPTI 112
           ANFLQQTGEQVKNMAQGAAEAVKNTLGMNTDSSSNAAANTNNPTNTPSPTI
Sbjct: 61  ANFLQQTGEQVKNMAQGAAEAVKNTLGMNTDSSSNAAANTNNPTNTPSPTI 111

BLAST of CmoCh08G006350 vs. NCBI nr
Match: XP_023515217.1 (late embryogenesis abundant protein 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 188.0 bits (476), Expect = 4.5e-44
Identity = 107/111 (96.40%), Postives = 110/111 (99.10%), Query Frame = 0

Query: 1   MASQQDISHSVGEAVGQAQVKKDEVINQAANSAQEAKDSASTTLDQSSAAQTASDLKDQA 60
           MASQQDISH+VGE VGQAQVKKDEV+NQAAN+AQEAKDSASTTLDQSSAAQTASDLKDQA
Sbjct: 1   MASQQDISHNVGEVVGQAQVKKDEVVNQAANAAQEAKDSASTTLDQSSAAQTASDLKDQA 60

Query: 61  ANFLQQTGEQVKNMAQGAAEAVKNTLGMNTDSSSNAAANTNNPTNTPSPTI 112
           ANFLQQTGEQVKNMAQGAAEAVKNTLGMNTDSSSNAAANTNNPTNTPSPTI
Sbjct: 61  ANFLQQTGEQVKNMAQGAAEAVKNTLGMNTDSSSNAAANTNNPTNTPSPTI 111

BLAST of CmoCh08G006350 vs. NCBI nr
Match: XP_038899752.1 (late embryogenesis abundant protein 2-like [Benincasa hispida])

HSP 1 Score: 133.7 bits (335), Expect = 1.0e-27
Identity = 80/111 (72.07%), Postives = 91/111 (81.98%), Query Frame = 0

Query: 1   MASQQDISHSVGEAVGQAQVKKDEVINQAANSAQEAKDSASTTLDQSSAAQTASDLKDQA 60
           MAS QDISH  GE VGQAQVKKDE++NQA+++A ++KD AST     S AQTAS+LKDQA
Sbjct: 1   MASHQDISHKAGEIVGQAQVKKDEILNQASHAAHDSKDKAST--HDQSPAQTASNLKDQA 60

Query: 61  ANFLQQTGEQVKNMAQGAAEAVKNTLGMNTDSSSNAAANTNNPTNTPSPTI 112
           ANFLQQTGEQVKNMAQGAA+AVKNTLGMNTD++ N    TNNPTN PS  I
Sbjct: 61  ANFLQQTGEQVKNMAQGAADAVKNTLGMNTDNTPNTNNPTNNPTNNPSTRI 109

BLAST of CmoCh08G006350 vs. TAIR 10
Match: AT1G52680.1 (late embryogenesis abundant protein-related / LEA protein-related )

HSP 1 Score: 65.9 bits (159), Expect = 2.4e-11
Identity = 48/113 (42.48%), Postives = 69/113 (61.06%), Query Frame = 0

Query: 1   MASQQDISHSVGEAVGQAQVKKDEVINQAANSAQEAKDSASTTLDQ--SSAAQTASDLKD 60
           M+S Q +SHS GE  GQ Q+KK+E +N  +++  +  D  + +  Q  S   Q    L  
Sbjct: 1   MSSSQQLSHSAGEVTGQVQLKKEEYLNNVSHAMNQNADHHTHSQSQLHSEHDQNNPSLIS 60

Query: 61  QAANFLQQTGEQVKNMAQGAAEAVKNTLGMNTDSSSNAAANTNNPTNTPSPTI 112
           QA++ +QQTG QVKNMAQGAA+AVKNTLGM+  ++S ++      +N P   I
Sbjct: 61  QASSVIQQTGGQVKNMAQGAADAVKNTLGMSPATNSPSSPAGTTRSNKPGSKI 113

BLAST of CmoCh08G006350 vs. TAIR 10
Match: AT5G38760.1 (Late embryogenesis abundant protein (LEA) family protein )

HSP 1 Score: 47.4 bits (111), Expect = 8.9e-06
Identity = 32/88 (36.36%), Postives = 48/88 (54.55%), Query Frame = 0

Query: 2  ASQQDISHSVGEAVGQAQVKKDEVINQAANSAQEAKDSASTTLDQSSAAQTASDLKDQAA 61
          ++ Q+IS   G+A GQ Q K   ++++A+N+AQ AK+S                      
Sbjct: 3  SNSQNISFQAGQAKGQTQEKASTMMDKASNAAQSAKES---------------------- 62

Query: 62 NFLQQTGEQVKNMAQGAAEAVKNTLGMN 90
            L++TG+Q+K  AQGA E+VKN  GMN
Sbjct: 63 --LKETGQQIKEKAQGATESVKNATGMN 66

BLAST of CmoCh08G006350 vs. TAIR 10
Match: AT1G15415.1 (The protein encoded by this gene was identified as a part of pollen proteome by mass spec analysis. It has weak homology to LEA (late embryo abundant) proteins. Encodes protein phosphatase 2A (PP2A) B'gamma subunit. Targeted to nucleus and cytosol. )

HSP 1 Score: 46.2 bits (108), Expect = 2.0e-05
Identity = 43/117 (36.75%), Postives = 59/117 (50.43%), Query Frame = 0

Query: 1   MASQQDISHSV--GEAVGQAQVKKDEVINQAANSAQEAKDSASTTLDQSSAAQTASDLKD 60
           MAS QD   SV  G+ VGQA VK+++  N +                             
Sbjct: 1   MASGQDEEFSVRAGQIVGQAHVKENDCNNSS----------------------------- 60

Query: 61  QAANFLQQTGEQVKNMAQGAAEAVKNTLGMNTDSS----SNAAANTNNPTNTPSPTI 112
           QA+ FLQQ GE+VK+MA  A+EAVKN LG+N D++    +    +  NP NT SP++
Sbjct: 61  QASGFLQQKGEKVKSMAHDASEAVKNKLGINNDNNEEYKNKNPLDKKNPNNTTSPSM 88

BLAST of CmoCh08G006350 vs. TAIR 10
Match: AT4G13560.1 (Late embryogenesis abundant protein (LEA) family protein )

HSP 1 Score: 43.5 bits (101), Expect = 1.3e-04
Identity = 46/109 (42.20%), Postives = 58/109 (53.21%), Query Frame = 0

Query: 1   MASQQDISHSVGEAVGQAQVKKD---EVINQAANSA--------QEAKDSAS-------- 60
           M+ QQ    + G+  GQAQ K +   E   Q A SA        Q A+D A+        
Sbjct: 1   MSQQQ---FNAGQNRGQAQEKAEQWTESAKQTAQSACDKTADLTQSARDKAADLTQSARD 60

Query: 61  TTLDQS-SAAQTASDLKDQAANFLQQTGEQVKNMAQGAAEAVKNTLGMN 90
            T D S SA ++A   ++QAA    QTGE VKNMAQGA + VKN+LGMN
Sbjct: 61  KTADGSHSANKSAQHNQEQAAGLFGQTGESVKNMAQGALDGVKNSLGMN 106

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
O498166.2e-0436.54Late embryogenesis abundant protein 1 OS=Cicer arietinum OX=3827 PE=2 SV=1[more]
Match NameE-valueIdentityDescription
A0A6J1HHY81.2e-45100.00late embryogenesis abundant protein 1 OS=Cucurbita moschata OX=3662 GN=LOC111464... [more]
A0A6J1KJU51.7e-4497.30late embryogenesis abundant protein 1 OS=Cucurbita maxima OX=3661 GN=LOC11149466... [more]
A0A0A0K8V22.1e-2365.79Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G433240 PE=4 SV=1[more]
A0A6J1GQ032.1e-2367.27late embryogenesis abundant protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC1... [more]
A0A6J1JRF13.6e-2364.86late embryogenesis abundant protein 1-like OS=Cucurbita maxima OX=3661 GN=LOC111... [more]
Match NameE-valueIdentityDescription
XP_022964497.12.4e-45100.00late embryogenesis abundant protein 1 [Cucurbita moschata][more]
KAG6593431.17.0e-4599.10hypothetical protein SDJN03_12907, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_023000409.13.5e-4497.30late embryogenesis abundant protein 1 [Cucurbita maxima][more]
XP_023515217.14.5e-4496.40late embryogenesis abundant protein 1-like [Cucurbita pepo subsp. pepo][more]
XP_038899752.11.0e-2772.07late embryogenesis abundant protein 2-like [Benincasa hispida][more]
Match NameE-valueIdentityDescription
AT1G52680.12.4e-1142.48late embryogenesis abundant protein-related / LEA protein-related [more]
AT5G38760.18.9e-0636.36Late embryogenesis abundant protein (LEA) family protein [more]
AT1G15415.12.0e-0536.75The protein encoded by this gene was identified as a part of pollen proteome by... [more]
AT4G13560.11.3e-0442.20Late embryogenesis abundant protein (LEA) family protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 30..54
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 85..111
NoneNo IPR availablePANTHERPTHR34191:SF9F6D8.10coord: 1..93
IPR039624Stress-induced protein KIN1/KIN2PANTHERPTHR34191LATE EMBRYOGENESIS ABUNDANT PROTEIN (LEA) FAMILY PROTEINcoord: 1..93

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh08G006350.1CmoCh08G006350.1mRNA