CmoCh08G006350 (gene) Cucurbita moschata (Rifu) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCAAGCCAACAAGACATTAGCCACAGCGTCGGCGAGGCCGTCGGCCAAGCTCAGGTAGTTTACCGCAACCAAATCGATATCAAACGCAGCCGTTTAGAACATATTATATATTTCAATTATTGTGTCAGGTGAAGAAGGATGAGGTCATCAACCAAGCAGCTAATTCAGCTCAAGAAGCAAAAGACAGCGCATCTACTACCCTTGATCAATCCTCAGCTGCCCAAACTGCCTCTGACCTCAAGGACCAAGCTGCAAATTTCCTTCAACAGGCAAATTTGTTATTGGAAAAAACTATATTTTAAAAAATTTGCAAATGGGTCCTTACAAAATTGCTTATTTATTTATTTTGATATGGTTTAGACTGGAGAGCAAGTGAAGAACATGGCTCAAGGAGCAGCTGAGGCAGTGAAAAACACTCTTGGGATGAACACTGATAGCAGTTCTAACGCCGCCGCCAACACCAACAACCCTACCAACACTCCATCCCCTACAATCTAA ATGGCAAGCCAACAAGACATTAGCCACAGCGTCGGCGAGGCCGTCGGCCAAGCTCAGGTGAAGAAGGATGAGGTCATCAACCAAGCAGCTAATTCAGCTCAAGAAGCAAAAGACAGCGCATCTACTACCCTTGATCAATCCTCAGCTGCCCAAACTGCCTCTGACCTCAAGGACCAAGCTGCAAATTTCCTTCAACAGACTGGAGAGCAAGTGAAGAACATGGCTCAAGGAGCAGCTGAGGCAGTGAAAAACACTCTTGGGATGAACACTGATAGCAGTTCTAACGCCGCCGCCAACACCAACAACCCTACCAACACTCCATCCCCTACAATCTAA ATGGCAAGCCAACAAGACATTAGCCACAGCGTCGGCGAGGCCGTCGGCCAAGCTCAGGTGAAGAAGGATGAGGTCATCAACCAAGCAGCTAATTCAGCTCAAGAAGCAAAAGACAGCGCATCTACTACCCTTGATCAATCCTCAGCTGCCCAAACTGCCTCTGACCTCAAGGACCAAGCTGCAAATTTCCTTCAACAGACTGGAGAGCAAGTGAAGAACATGGCTCAAGGAGCAGCTGAGGCAGTGAAAAACACTCTTGGGATGAACACTGATAGCAGTTCTAACGCCGCCGCCAACACCAACAACCCTACCAACACTCCATCCCCTACAATCTAA MASQQDISHSVGEAVGQAQVKKDEVINQAANSAQEAKDSASTTLDQSSAAQTASDLKDQAANFLQQTGEQVKNMAQGAAEAVKNTLGMNTDSSSNAAANTNNPTNTPSPTI Homology
BLAST of CmoCh08G006350 vs. ExPASy Swiss-Prot
Match: O49816 (Late embryogenesis abundant protein 1 OS=Cicer arietinum OX=3827 PE=2 SV=1) HSP 1 Score: 45.1 bits (105), Expect = 6.2e-04 Identity = 38/104 (36.54%), Postives = 52/104 (50.00%), Query Frame = 0
BLAST of CmoCh08G006350 vs. ExPASy TrEMBL
Match: A0A6J1HHY8 (late embryogenesis abundant protein 1 OS=Cucurbita moschata OX=3662 GN=LOC111464504 PE=4 SV=1) HSP 1 Score: 192.2 bits (487), Expect = 1.2e-45 Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = 0
BLAST of CmoCh08G006350 vs. ExPASy TrEMBL
Match: A0A6J1KJU5 (late embryogenesis abundant protein 1 OS=Cucurbita maxima OX=3661 GN=LOC111494669 PE=4 SV=1) HSP 1 Score: 188.3 bits (477), Expect = 1.7e-44 Identity = 108/111 (97.30%), Postives = 110/111 (99.10%), Query Frame = 0
BLAST of CmoCh08G006350 vs. ExPASy TrEMBL
Match: A0A0A0K8V2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G433240 PE=4 SV=1) HSP 1 Score: 118.2 bits (295), Expect = 2.1e-23 Identity = 75/114 (65.79%), Postives = 85/114 (74.56%), Query Frame = 0
BLAST of CmoCh08G006350 vs. ExPASy TrEMBL
Match: A0A6J1GQ03 (late embryogenesis abundant protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC111456481 PE=4 SV=1) HSP 1 Score: 118.2 bits (295), Expect = 2.1e-23 Identity = 74/110 (67.27%), Postives = 85/110 (77.27%), Query Frame = 0
BLAST of CmoCh08G006350 vs. ExPASy TrEMBL
Match: A0A6J1JRF1 (late embryogenesis abundant protein 1-like OS=Cucurbita maxima OX=3661 GN=LOC111488219 PE=4 SV=1) HSP 1 Score: 117.5 bits (293), Expect = 3.6e-23 Identity = 72/111 (64.86%), Postives = 84/111 (75.68%), Query Frame = 0
BLAST of CmoCh08G006350 vs. NCBI nr
Match: XP_022964497.1 (late embryogenesis abundant protein 1 [Cucurbita moschata]) HSP 1 Score: 192.2 bits (487), Expect = 2.4e-45 Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = 0
BLAST of CmoCh08G006350 vs. NCBI nr
Match: KAG6593431.1 (hypothetical protein SDJN03_12907, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 190.7 bits (483), Expect = 7.0e-45 Identity = 110/111 (99.10%), Postives = 110/111 (99.10%), Query Frame = 0
BLAST of CmoCh08G006350 vs. NCBI nr
Match: XP_023000409.1 (late embryogenesis abundant protein 1 [Cucurbita maxima]) HSP 1 Score: 188.3 bits (477), Expect = 3.5e-44 Identity = 108/111 (97.30%), Postives = 110/111 (99.10%), Query Frame = 0
BLAST of CmoCh08G006350 vs. NCBI nr
Match: XP_023515217.1 (late embryogenesis abundant protein 1-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 188.0 bits (476), Expect = 4.5e-44 Identity = 107/111 (96.40%), Postives = 110/111 (99.10%), Query Frame = 0
BLAST of CmoCh08G006350 vs. NCBI nr
Match: XP_038899752.1 (late embryogenesis abundant protein 2-like [Benincasa hispida]) HSP 1 Score: 133.7 bits (335), Expect = 1.0e-27 Identity = 80/111 (72.07%), Postives = 91/111 (81.98%), Query Frame = 0
BLAST of CmoCh08G006350 vs. TAIR 10
Match: AT1G52680.1 (late embryogenesis abundant protein-related / LEA protein-related ) HSP 1 Score: 65.9 bits (159), Expect = 2.4e-11 Identity = 48/113 (42.48%), Postives = 69/113 (61.06%), Query Frame = 0
BLAST of CmoCh08G006350 vs. TAIR 10
Match: AT5G38760.1 (Late embryogenesis abundant protein (LEA) family protein ) HSP 1 Score: 47.4 bits (111), Expect = 8.9e-06 Identity = 32/88 (36.36%), Postives = 48/88 (54.55%), Query Frame = 0
BLAST of CmoCh08G006350 vs. TAIR 10
Match: AT1G15415.1 (The protein encoded by this gene was identified as a part of pollen proteome by mass spec analysis. It has weak homology to LEA (late embryo abundant) proteins. Encodes protein phosphatase 2A (PP2A) B'gamma subunit. Targeted to nucleus and cytosol. ) HSP 1 Score: 46.2 bits (108), Expect = 2.0e-05 Identity = 43/117 (36.75%), Postives = 59/117 (50.43%), Query Frame = 0
BLAST of CmoCh08G006350 vs. TAIR 10
Match: AT4G13560.1 (Late embryogenesis abundant protein (LEA) family protein ) HSP 1 Score: 43.5 bits (101), Expect = 1.3e-04 Identity = 46/109 (42.20%), Postives = 58/109 (53.21%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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