CmoCh08G005800 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh08G005800
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	photosynthetic NDH subunit of subcomplex B 1, chloroplastic
Location	Cmo_Chr08: 3550981 .. 3552129 (+)
RNA-Seq Expression	CmoCh08G005800
Synteny	CmoCh08G005800

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGCTCACCAATCAGTTCGAGATCTACCAGTGAGTACATTGTTCTCATTAATGCACTTATTTTCCATTAGTTGATTGCTTGTCAAGGAGTGAACTTGTTTTGTATAGTAAATTTCTCTTTTGTGAATGCCTGACCACTCTCGTTTCTTTACTGCTAATTTTCATCTCGAGGGGATCGTTACCTGTGCTTGCATTTTCCCACGACGTTATGACTCATGTATGGAAAGTTGAAAAAATGAAGAACAAAAGGGCATAAATTGTATTTCTTCTTGAAAAGATTGAATGAACTTGATCTCGACCGATCATTTATCCTAAGCTCGATGGGTAAAGAACTCGTAGTCCTAAATTTTTGGTTGAGTTTGAGTCGAACTTTAAATTTTGTGTCTTTTGAAAATGTTCCATAGTTCTTTTCAATTTTGTGTTTAATTTTGATAGAGATTTCATATATTTACATTTTAGATCTTTTCATATCATGGTGGTGTGGTTCACACGTTCATCCACCTTTTCTCAATTTTGCTAAAAGTTTACTTTTTGTTTTTTTTTTTAATGATTATTCAATTAATCTTATTTTTCTTCCCTTTTCAATATTTTCGTTTAATTTAAACTGCAACTTATGATCATACTTAAAAAAAGTTTATAGATTCTTCAAAATTTATGTTATATTTAAAAAATGTCCTAACTTGACTTACCCAACCAATGAACATCTTTATATACTAACATGGTTAGATTGTTCGAGGTTGGTCACTCTCCTTTGCAATGATGGATCTTGAAATTTAGAATAAAGTTTAAATATTTCAAACAACGGGTCAGTCAGGTTAGATAATTTTTGGTTTGGGTCCATAGATGTTGAGATTGGTGGGAGAACTGGGAAAAATGGGATGATTTGAGTGGTGCTAACTTGTTCAAGGACAGGTACTATGGCATGGTCTTGTCAACCAAGCTAGCAGGGCTTGGACATGCAGTGTTTTTGTTTATGACAGCAGCCAGAGACAGGGTGAGCTACGTTTATCTAGACGTGAATGCAGCTGGAGCAGGGCTTTTTCTTGTCTCAAAACATTTAAACCAAATGCCTCTAATCTTTGATGCCTTCAAGGCTCATTTTCTTGATTTGGGTACCATGAGGCCCTATCGCAGCCTTCTCAGGTAG

mRNA sequence

ATGAAGCTCACCAATCAGTTCGAGATCTACCATAAATTTCTCTTTTGTGAATGCCTGACCACTCTCGTTTCTTTACTGCTAATTTTCATCTCGAGGGGATCGTTACCTGTGCTTGCATTTTCCCACGACGTTATGACTCATGACAGGTACTATGGCATGGTCTTGTCAACCAAGCTAGCAGGGCTTGGACATGCAGTGTTTTTGTTTATGACAGCAGCCAGAGACAGGGTGAGCTACGTTTATCTAGACGTGAATGCAGCTGGAGCAGGGCTTTTTCTTGTCTCAAAACATTTAAACCAAATGCCTCTAATCTTTGATGCCTTCAAGGCTCATTTTCTTGATTTGGGTACCATGAGGCCCTATCGCAGCCTTCTCAGGTAG

Coding sequence (CDS)

ATGAAGCTCACCAATCAGTTCGAGATCTACCATAAATTTCTCTTTTGTGAATGCCTGACCACTCTCGTTTCTTTACTGCTAATTTTCATCTCGAGGGGATCGTTACCTGTGCTTGCATTTTCCCACGACGTTATGACTCATGACAGGTACTATGGCATGGTCTTGTCAACCAAGCTAGCAGGGCTTGGACATGCAGTGTTTTTGTTTATGACAGCAGCCAGAGACAGGGTGAGCTACGTTTATCTAGACGTGAATGCAGCTGGAGCAGGGCTTTTTCTTGTCTCAAAACATTTAAACCAAATGCCTCTAATCTTTGATGCCTTCAAGGCTCATTTTCTTGATTTGGGTACCATGAGGCCCTATCGCAGCCTTCTCAGGTAG

Protein sequence

MKLTNQFEIYHKFLFCECLTTLVSLLLIFISRGSLPVLAFSHDVMTHDRYYGMVLSTKLAGLGHAVFLFMTAARDRVSYVYLDVNAAGAGLFLVSKHLNQMPLIFDAFKAHFLDLGTMRPYRSLLR

Homology

[Close]

BLAST of CmoCh08G005800 vs. ExPASy Swiss-Prot
Match: Q9S9N6 (Photosynthetic NDH subunit of subcomplex B 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PNSB1 PE=2 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 3.4e-14
Identity = 46/82 (56.10%), Postives = 56/82 (68.29%), Query Frame = 0


Query: 49  RYYGMVLSTKLAGLGHAVFLFMTAARDRVSYVYLDVNAAGAGLFL----VSKHLNQMPLI 108
           RYY MVLSTKLAGLGHA FLFMT ARDRVSY+Y +VN+AGAGL L     +++ N   L 
Sbjct: 194 RYYDMVLSTKLAGLGHAAFLFMTTARDRVSYIYPNVNSAGAGLMLSETFTAENTNLSELG 253

Query: 109 FDAFKAHFLDLGTMRPYRSLLR 127
           +  +      LG  RP+RS+ R
Sbjct: 254 YSMYTQMEDWLG--RPFRSVPR 273

[Close]

BLAST of CmoCh08G005800 vs. ExPASy TrEMBL
Match: A0A392NQR7 (Uncharacterized protein (Fragment) OS=Trifolium medium OX=97028 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 3.0e-13
Identity = 46/87 (52.87%), Postives = 57/87 (65.52%), Query Frame = 0


Query: 40  FSHDVMTHDRYYGMVLSTKLAGLGHAVFLFMTAARDRVSYVYLDVNAAGAGLFLVSKHLN 99
           F   +M  +RYY MVLSTKLAG+GHA +LFMT ARDRVSYVY +VNAAGAGLFL      
Sbjct: 24  FDSILMFCNRYYDMVLSTKLAGIGHAAYLFMTTARDRVSYVYPNVNAAGAGLFLSETFTP 83

Query: 100 QMPLIFDA--FKAHFLDLGTMRPYRSL 125
             P + +      H ++    RP+RS+
Sbjct: 84  DSPNLSEGGYHMYHQMEDWLGRPFRSI 110

[Close]

BLAST of CmoCh08G005800 vs. ExPASy TrEMBL
Match: A0A0A0K6S9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G431990 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 3.9e-13
Identity = 41/45 (91.11%), Postives = 42/45 (93.33%), Query Frame = 0


Query: 49  RYYGMVLSTKLAGLGHAVFLFMTAARDRVSYVYLDVNAAGAGLFL 94
           RYY MVLSTKLAGLGHAVFLFMT ARDRVSY+Y DVNAAGAGLFL
Sbjct: 198 RYYDMVLSTKLAGLGHAVFLFMTTARDRVSYIYPDVNAAGAGLFL 242

[Close]

BLAST of CmoCh08G005800 vs. ExPASy TrEMBL
Match: A0A5A7UYW0 (Photosynthetic NDH subunit of subcomplex B 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold459G001650 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 6.6e-13
Identity = 40/45 (88.89%), Postives = 42/45 (93.33%), Query Frame = 0


Query: 49  RYYGMVLSTKLAGLGHAVFLFMTAARDRVSYVYLDVNAAGAGLFL 94
           RYY MVLSTKLAG+GHAVFLFMT ARDRVSY+Y DVNAAGAGLFL
Sbjct: 198 RYYDMVLSTKLAGIGHAVFLFMTTARDRVSYIYPDVNAAGAGLFL 242

[Close]

BLAST of CmoCh08G005800 vs. ExPASy TrEMBL
Match: A0A1S3CEK1 (photosynthetic NDH subunit of subcomplex B 1, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103499839 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 6.6e-13
Identity = 40/45 (88.89%), Postives = 42/45 (93.33%), Query Frame = 0


Query: 49  RYYGMVLSTKLAGLGHAVFLFMTAARDRVSYVYLDVNAAGAGLFL 94
           RYY MVLSTKLAG+GHAVFLFMT ARDRVSY+Y DVNAAGAGLFL
Sbjct: 198 RYYDMVLSTKLAGIGHAVFLFMTTARDRVSYIYPDVNAAGAGLFL 242

[Close]

BLAST of CmoCh08G005800 vs. ExPASy TrEMBL
Match: A0A6J1CV27 (photosynthetic NDH subunit of subcomplex B 1, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111014527 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 8.6e-13
Identity = 40/45 (88.89%), Postives = 42/45 (93.33%), Query Frame = 0


Query: 49  RYYGMVLSTKLAGLGHAVFLFMTAARDRVSYVYLDVNAAGAGLFL 94
           RYY MVLSTKLAG+GHAVFLFMT ARDRVSY+Y DVNAAGAGLFL
Sbjct: 204 RYYDMVLSTKLAGVGHAVFLFMTTARDRVSYIYPDVNAAGAGLFL 248

[Close]

BLAST of CmoCh08G005800 vs. NCBI nr
Match: KAG7025711.1 (Photosynthetic NDH subunit of subcomplex B 1, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 156.0 bits (393), Expect = 2.2e-34
Identity = 86/126 (68.25%), Postives = 87/126 (69.05%), Query Frame = 0


Query: 1   MKLTNQFEIYHKFLFCECLTTLVSLLLIFISRGSLPVLAFSHDVMTHDRYYGMVLSTKLA 60
           MKLTNQFEIY                                      +YYGMVLSTKLA
Sbjct: 1   MKLTNQFEIY--------------------------------------QYYGMVLSTKLA 60

Query: 61  GLGHAVFLFMTAARDRVSYVYLDVNAAGAGLFLVSKHLNQMPLIFDAFKAHFLDLGTMRP 120
           GLGHAVFL MTAARDRVSYVYLDVNAAGAGLFLVSKHLNQMPLIFDAFKAHFLDLGTMRP
Sbjct: 61  GLGHAVFLLMTAARDRVSYVYLDVNAAGAGLFLVSKHLNQMPLIFDAFKAHFLDLGTMRP 88

Query: 121 YRSLLR 127
           YRSLLR
Sbjct: 121 YRSLLR 88

[Close]

BLAST of CmoCh08G005800 vs. NCBI nr
Match: MCI01734.1 (hypothetical protein [Trifolium medium])

HSP 1 Score: 84.7 bits (208), Expect = 6.1e-13
Identity = 46/87 (52.87%), Postives = 57/87 (65.52%), Query Frame = 0


Query: 40  FSHDVMTHDRYYGMVLSTKLAGLGHAVFLFMTAARDRVSYVYLDVNAAGAGLFLVSKHLN 99
           F   +M  +RYY MVLSTKLAG+GHA +LFMT ARDRVSYVY +VNAAGAGLFL      
Sbjct: 24  FDSILMFCNRYYDMVLSTKLAGIGHAAYLFMTTARDRVSYVYPNVNAAGAGLFLSETFTP 83

Query: 100 QMPLIFDA--FKAHFLDLGTMRPYRSL 125
             P + +      H ++    RP+RS+
Sbjct: 84  DSPNLSEGGYHMYHQMEDWLGRPFRSI 110

[Close]

BLAST of CmoCh08G005800 vs. NCBI nr
Match: XP_038896546.1 (photosynthetic NDH subunit of subcomplex B 1, chloroplastic [Benincasa hispida])

HSP 1 Score: 84.3 bits (207), Expect = 8.0e-13
Identity = 41/45 (91.11%), Postives = 42/45 (93.33%), Query Frame = 0


Query: 49  RYYGMVLSTKLAGLGHAVFLFMTAARDRVSYVYLDVNAAGAGLFL 94
           RYY MVLSTKLAGLGHAVFLFMT ARDRVSY+Y DVNAAGAGLFL
Sbjct: 202 RYYDMVLSTKLAGLGHAVFLFMTTARDRVSYIYPDVNAAGAGLFL 246

[Close]

BLAST of CmoCh08G005800 vs. NCBI nr
Match: XP_004136098.1 (photosynthetic NDH subunit of subcomplex B 1, chloroplastic [Cucumis sativus] >KGN45218.1 hypothetical protein Csa_015823 [Cucumis sativus])

HSP 1 Score: 84.3 bits (207), Expect = 8.0e-13
Identity = 41/45 (91.11%), Postives = 42/45 (93.33%), Query Frame = 0


Query: 49  RYYGMVLSTKLAGLGHAVFLFMTAARDRVSYVYLDVNAAGAGLFL 94
           RYY MVLSTKLAGLGHAVFLFMT ARDRVSY+Y DVNAAGAGLFL
Sbjct: 198 RYYDMVLSTKLAGLGHAVFLFMTTARDRVSYIYPDVNAAGAGLFL 242

[Close]

BLAST of CmoCh08G005800 vs. NCBI nr
Match: KAA0058709.1 (photosynthetic NDH subunit of subcomplex B 1 [Cucumis melo var. makuwa] >TYK10515.1 photosynthetic NDH subunit of subcomplex B 1 [Cucumis melo var. makuwa])

HSP 1 Score: 83.6 bits (205), Expect = 1.4e-12
Identity = 40/45 (88.89%), Postives = 42/45 (93.33%), Query Frame = 0


Query: 49  RYYGMVLSTKLAGLGHAVFLFMTAARDRVSYVYLDVNAAGAGLFL 94
           RYY MVLSTKLAG+GHAVFLFMT ARDRVSY+Y DVNAAGAGLFL
Sbjct: 198 RYYDMVLSTKLAGIGHAVFLFMTTARDRVSYIYPDVNAAGAGLFL 242

[Close]

BLAST of CmoCh08G005800 vs. TAIR 10
Match: AT1G15980.1 (NDH-dependent cyclic electron flow 1 )

HSP 1 Score: 79.3 bits (194), Expect = 2.4e-15
Identity = 46/82 (56.10%), Postives = 56/82 (68.29%), Query Frame = 0


Query: 49  RYYGMVLSTKLAGLGHAVFLFMTAARDRVSYVYLDVNAAGAGLFL----VSKHLNQMPLI 108
           RYY MVLSTKLAGLGHA FLFMT ARDRVSY+Y +VN+AGAGL L     +++ N   L 
Sbjct: 194 RYYDMVLSTKLAGLGHAAFLFMTTARDRVSYIYPNVNSAGAGLMLSETFTAENTNLSELG 253

Query: 109 FDAFKAHFLDLGTMRPYRSLLR 127
           +  +      LG  RP+RS+ R
Sbjct: 254 YSMYTQMEDWLG--RPFRSVPR 273

The following BLAST results are available for this feature:

BLAST of CmoCh08G005800 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9S9N6	3.4e-14	56.10	Photosynthetic NDH subunit of subcomplex B 1, chloroplastic OS=Arabidopsis thali...	[more]

BLAST of CmoCh08G005800 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A392NQR7	3.0e-13	52.87	Uncharacterized protein (Fragment) OS=Trifolium medium OX=97028 PE=4 SV=1	[more]
A0A0A0K6S9	3.9e-13	91.11	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G431990 PE=4 SV=1	[more]
A0A5A7UYW0	6.6e-13	88.89	Photosynthetic NDH subunit of subcomplex B 1 OS=Cucumis melo var. makuwa OX=1194...	[more]
A0A1S3CEK1	6.6e-13	88.89	photosynthetic NDH subunit of subcomplex B 1, chloroplastic OS=Cucumis melo OX=3...	[more]
A0A6J1CV27	8.6e-13	88.89	photosynthetic NDH subunit of subcomplex B 1, chloroplastic OS=Momordica charant...	[more]

BLAST of CmoCh08G005800 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7025711.1	2.2e-34	68.25	Photosynthetic NDH subunit of subcomplex B 1, chloroplastic, partial [Cucurbita ...	[more]
MCI01734.1	6.1e-13	52.87	hypothetical protein [Trifolium medium]	[more]
XP_038896546.1	8.0e-13	91.11	photosynthetic NDH subunit of subcomplex B 1, chloroplastic [Benincasa hispida]	[more]
XP_004136098.1	8.0e-13	91.11	photosynthetic NDH subunit of subcomplex B 1, chloroplastic [Cucumis sativus] >K...	[more]
KAA0058709.1	1.4e-12	88.89	photosynthetic NDH subunit of subcomplex B 1 [Cucumis melo var. makuwa] >TYK1051...	[more]

BLAST of CmoCh08G005800 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G15980.1	2.4e-15	56.10	NDH-dependent cyclic electron flow 1	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR044983	Photosynthetic NDH subunit of subcomplex B 1, chloroplastic	PANTHER	PTHR37698	PHOTOSYNTHETIC NDH SUBUNIT OF SUBCOMPLEX B 1, CHLOROPLASTIC	coord: 45..95

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh08G005800.1	CmoCh08G005800.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009773	photosynthetic electron transport in photosystem I
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0010598	NAD(P)H dehydrogenase complex (plastoquinone)
cellular_component	GO:0009507	chloroplast