CmoCh08G005250 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh08G005250
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	zinc finger protein WIP2-like
Location	Cmo_Chr08: 3286506 .. 3288838 (+)
RNA-Seq Expression	CmoCh08G005250
Synteny	CmoCh08G005250

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AAACCCTTGAAACCCTTGAAACCCTTGAAACCCTTGAAACCCTTCACCCCAACCATGACAGACCCTAATTACTCCACCTTCTTCTCTCCCAATTCCTTCACCTTCATCCCTCTCCCACCCTCTCCTCCGCCACTCTCTCCGCCGCAAGCCCTCCCTCTCATCAACACTCTCTCTCTGGAAACCACCGACCAACCTTCCTCCAGCACCACCAACAACCACGAAAACGCCCTCACCCTTGATTTCTGCCTCTCTTGCCCTACCTCCGATCTCGACCTCTCCACCTCCTTCCCGCCGGACCCCACCGGAAAAACCCACCACGACGACCTCTCCCCCCTCCCTTCCCCGATCTCCGGCAAGGGTCAGTTCTGGATTCCAACCCCATCTCAGATCCTCTTCGGTCCTTCTCAGTTCTCCTGCCATCTTTGCTCTAAAGCCTTCAATCGATACAATAATCTTCAGGTAATTTATTATTTCATTAAAAAAAAAACATGTTTTTTTTTTCTTTTGATCTATTTTATTCGAATTTATAATAATTATTTGTGTTAGGGTTTTGATTTAACTGATCAAGAAATGTTCTTCATGTTCTTCATGTTCTTCATTCCTTTTTTTTTTTGTTTTTTTTGTTTACCTTTTCAGTCTGAGAAATTGAAGTGATCTTCTGCAAAAGAACTGTTTGAGCTGAGAATTAATTATGGGGAAAAGGGTTTCCATTAATTACTAAAACAAAAATTTCCATTTTTTTTTTAATTTCTAGGGATTTAATTAAATATCAAATGGGTTTATTTTAATTAATTCAAAAATAATTTATATTTTTATATGTAGATGCATATGTGGGGGCATGGTTCTCAATACAGGAAAGGACCAGAGTCCCTAAAAGGAACACAGCCGACCGCCATGCTACGCTTGCCGTGCTACTGCTGCGCGCCCGGGTGCAAACACAACATCGACAACCCGACGTCGCGACCGCTCAAGGACTTTCGCACGCTCCAAACACATTACAAGCGTAAGCATGGAATCAAGCCTTTTAGTTGTAGAAAATGTAGCAAAGCGTTTGCTGTAAAAGGTGATTGGCGAACGCATGAGAAGAATTGTGGGAAGATTTGGTATTGTTTTTGTGGGTCTGACTTTAAACATAAGCGCTCGCTTAAAGACCATATCAAGGCCTTTGGACAAGGTCATGGCTCGTTGGGTCTTGATTACTTTGACGACGATAACGAACCCGCATCCGAAGTTGAACAAGATGGCACCGTTGTTCACTAAGATGTTTCGTTCTTTGTTCTTGTTTGTTTGTTGAATAACACGTCGAGCGACCGAAGAGAGGTGTGATGTTCGACGTTATGTTGGATTGTGTTATTTGTATATTGTGAATTGAGTTGATGAGCTTGTAAAGAGGCTACGAGAAGTTGACGGTTAATTGAAATAAAAATATTTTATAATTAATTATTCATTTTGATTTCTTACTAATTACTATAATTATTATTAAAATTTTGAATAAATATTACTAAAATTTAAATCTATTATACTTATTAATGAATTAAATTTTAAAGGGTTGAAATTAATTTAATAAAACTAAATTAATTATCTAAAATTAAATATATTTATGGGGGAGAGTATTTTAATATAAGGTCTAGTGGCATTATTGTAATATTTTTGAAACTTATGGGCATTATTGTAAATGTGCTTTTTCCTCGTCCATAATGGGCCGCCAGAAACTTCATGGGCCCTATTTATCTGAAGCCCTTTGGTAACGGCTCCACCAGATTTCTCTGCAACTCATCCCTAACCTCCGAATCTCCTTTTCTTTGTGTGGAACAAAATTGAATGCTTCCATGGCGTTATCGACGTGTTTAAATCACAGCCTTGGATTTCCCTCATCGAACGGTTCAAAGATCACGGCATGTACGAGTTCGAATACTCCTCCGATCGGTAACGTCAGTTTCCGATCCGCCGCCGCGAAACGCTGCTTAAGATGCCGCACCGTTTACTCCGACCTCGATAATTCTCCTTCGGCATGCGCCTTCCATGGCCACGTCACTGGTTCGAATCTTATCGTTATCTTTCTCTTCCAATTTTGCCTTCTTTTTAATCGGTGTTTATTAACAGGGGAGAGTGGGTTGTTTTCGTTGTCGCCGCCGCATCAGGGGATTGACGGCGAGTGGAGCGACGGCTCTGGTGTGATCGTTTACAAGTGGAATGAGAAGGGCAATCGTCCGAACACCGGCGCCGGCAACTGGAAGAGACGGTGGAGCTGTTGCTCTGAGTATGATGAAGATGCCCCTCCTTGTCGCCGGGGATGGCACGTTTCTTATGACGATGGTTTCACTTTGTTTTAG

mRNA sequence

AAACCCTTGAAACCCTTGAAACCCTTGAAACCCTTGAAACCCTTCACCCCAACCATGACAGACCCTAATTACTCCACCTTCTTCTCTCCCAATTCCTTCACCTTCATCCCTCTCCCACCCTCTCCTCCGCCACTCTCTCCGCCGCAAGCCCTCCCTCTCATCAACACTCTCTCTCTGGAAACCACCGACCAACCTTCCTCCAGCACCACCAACAACCACGAAAACGCCCTCACCCTTGATTTCTGCCTCTCTTGCCCTACCTCCGATCTCGACCTCTCCACCTCCTTCCCGCCGGACCCCACCGGAAAAACCCACCACGACGACCTCTCCCCCCTCCCTTCCCCGATCTCCGGCAAGGGTCAGTTCTGGATTCCAACCCCATCTCAGATCCTCTTCGGTCCTTCTCAGTTCTCCTGCCATCTTTGCTCTAAAGCCTTCAATCGATACAATAATCTTCAGATTTCTCTGCAACTCATCCCTAACCTCCGAATCTCCTTTTCTTTGTGTGGAACAAAATTGAATGCTTCCATGGCGTTATCGACGTGTTTAAATCACAGCCTTGGATTTCCCTCATCGAACGGTTCAAAGATCACGGCATGTACGAGTTCGAATACTCCTCCGATCGGTAACGTCAGTTTCCGATCCGCCGCCGCGAAACGCTGCTTAAGATGCCGCACCGTTTACTCCGACCTCGATAATTCTCCTTCGGCATGCGCCTTCCATGGCCACGTCACTGGTTCGAATCTTATCGTTATCTTTCTCTTCCAATTTTGCCTTCTTTTTAATCGGTGTTTATTAACAGGGGAGAGTGGGTTGTTTTCGTTGTCGCCGCCGCATCAGGGGATTGACGGCGAGTGGAGCGACGGCTCTGGTGTGATCGTTTACAAGTGGAATGAGAAGGGCAATCGTCCGAACACCGGCGCCGGCAACTGGAAGAGACGGTGGAGCTGTTGCTCTGAGTATGATGAAGATGCCCCTCCTTGTCGCCGGGGATGGCACGTTTCTTATGACGATGGTTTCACTTTGTTTTAG

Coding sequence (CDS)

ATGACAGACCCTAATTACTCCACCTTCTTCTCTCCCAATTCCTTCACCTTCATCCCTCTCCCACCCTCTCCTCCGCCACTCTCTCCGCCGCAAGCCCTCCCTCTCATCAACACTCTCTCTCTGGAAACCACCGACCAACCTTCCTCCAGCACCACCAACAACCACGAAAACGCCCTCACCCTTGATTTCTGCCTCTCTTGCCCTACCTCCGATCTCGACCTCTCCACCTCCTTCCCGCCGGACCCCACCGGAAAAACCCACCACGACGACCTCTCCCCCCTCCCTTCCCCGATCTCCGGCAAGGGTCAGTTCTGGATTCCAACCCCATCTCAGATCCTCTTCGGTCCTTCTCAGTTCTCCTGCCATCTTTGCTCTAAAGCCTTCAATCGATACAATAATCTTCAGATTTCTCTGCAACTCATCCCTAACCTCCGAATCTCCTTTTCTTTGTGTGGAACAAAATTGAATGCTTCCATGGCGTTATCGACGTGTTTAAATCACAGCCTTGGATTTCCCTCATCGAACGGTTCAAAGATCACGGCATGTACGAGTTCGAATACTCCTCCGATCGGTAACGTCAGTTTCCGATCCGCCGCCGCGAAACGCTGCTTAAGATGCCGCACCGTTTACTCCGACCTCGATAATTCTCCTTCGGCATGCGCCTTCCATGGCCACGTCACTGGTTCGAATCTTATCGTTATCTTTCTCTTCCAATTTTGCCTTCTTTTTAATCGGTGTTTATTAACAGGGGAGAGTGGGTTGTTTTCGTTGTCGCCGCCGCATCAGGGGATTGACGGCGAGTGGAGCGACGGCTCTGGTGTGATCGTTTACAAGTGGAATGAGAAGGGCAATCGTCCGAACACCGGCGCCGGCAACTGGAAGAGACGGTGGAGCTGTTGCTCTGAGTATGATGAAGATGCCCCTCCTTGTCGCCGGGGATGGCACGTTTCTTATGACGATGGTTTCACTTTGTTTTAG

Protein sequence

MTDPNYSTFFSPNSFTFIPLPPSPPPLSPPQALPLINTLSLETTDQPSSSTTNNHENALTLDFCLSCPTSDLDLSTSFPPDPTGKTHHDDLSPLPSPISGKGQFWIPTPSQILFGPSQFSCHLCSKAFNRYNNLQISLQLIPNLRISFSLCGTKLNASMALSTCLNHSLGFPSSNGSKITACTSSNTPPIGNVSFRSAAAKRCLRCRTVYSDLDNSPSACAFHGHVTGSNLIVIFLFQFCLLFNRCLLTGESGLFSLSPPHQGIDGEWSDGSGVIVYKWNEKGNRPNTGAGNWKRRWSCCSEYDEDAPPCRRGWHVSYDDGFTLF

Homology

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BLAST of CmoCh08G005250 vs. ExPASy Swiss-Prot
Match: Q9SVY1 (Zinc finger protein WIP2 OS=Arabidopsis thaliana OX=3702 GN=WIP2 PE=1 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 2.2e-09
Identity = 44/118 (37.29%), Postives = 60/118 (50.85%), Query Frame = 0


Query: 27  LSPPQALPLINTLSLETTDQPSSSTTNNHENALTLDFCLSCPTSDLDLSTSFPPDPTGKT 86
           L  P A  + + L + ++   SS TT++HE+               DL   +     G  
Sbjct: 130 LPSPSAQEMASLLMMSSSSS-SSRTTHHHEDM----------NHKKDLDHEYSHGAVGGG 189

Query: 87  HHDDLSPLPSP----IS--GKGQFWIPTPSQILFGPSQFSCHLCSKAFNRYNNLQISL 139
             DD   +       IS   KGQ+WIPTPSQIL GP+QFSC +C K FNRYNN+Q+ +
Sbjct: 190 EDDDEDSVGGDGGCRISRLNKGQYWIPTPSQILIGPTQFSCPVCFKTFNRYNNMQMHM 236

[Close]

BLAST of CmoCh08G005250 vs. ExPASy Swiss-Prot
Match: Q8W031 (Zinc finger protein WIP5 OS=Arabidopsis thaliana OX=3702 GN=WIP5 PE=2 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 1.9e-08
Identity = 50/164 (30.49%), Postives = 75/164 (45.73%), Query Frame = 0


Query: 2   TDPNYSTFFSPNSFTFIPLPPSPPPLSPPQALPLINTLSLETTDQPS----------SST 61
           T+PNY       S +     P+ PPL   +ALPL++   +   +Q            SS+
Sbjct: 41  TNPNYINHTHTTSTS-----PNSPPLR--EALPLLSLSPIRHQEQQDQHYFMDTHQISSS 100

Query: 62  TNNHENALTLDFCLSCPTSDL--DLSTSFPPDPTG---------------KTHHDDLSPL 121
               +  +T+D  L  P   +   + ++  PD T                ++H DD    
Sbjct: 101 NFLDDPLVTVDLHLGLPNYGVGESIRSNIAPDATTDEQDQDHDRGVEVTVESHLDDDDDH 160

Query: 122 PSPISGKGQFWIPTPSQILFGPSQFSCHLCSKAFNRYNNLQISL 139
              +     +WIPTPSQIL GP+QF+C LC K FNRYNN+Q+ +
Sbjct: 161 HGDLHRGHHYWIPTPSQILIGPTQFTCPLCFKTFNRYNNMQMHM 197

[Close]

BLAST of CmoCh08G005250 vs. ExPASy Swiss-Prot
Match: Q9FX68 (Zinc finger protein WIP6 OS=Arabidopsis thaliana OX=3702 GN=WIP6 PE=2 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 2.4e-08
Identity = 42/117 (35.90%), Postives = 64/117 (54.70%), Query Frame = 0


Query: 27  LSPP-QALPLINTLSLETTDQPSSSTTNNH----ENALTLDFCLSCPTSDLDLSTSFPPD 86
           L PP Q  P  N     T+ +PSS    NH     N +T+   +  P+SD +        
Sbjct: 20  LGPPGQQYPSHNK---PTSTKPSSDHEFNHPLTNPNGVTVALHIGPPSSDKETL------ 79

Query: 87  PTGKTHHDDLSPLPSPISGKGQFWIPTPSQILFGPSQFSCHLCSKAFNRYNNLQISL 139
            +G  + + L+      + +GQ+WIP+ SQIL GP+QFSC +C+K FNR+NN+Q+ +
Sbjct: 80  -SGGNNQEGLT------ARQGQYWIPSLSQILVGPTQFSCSVCNKTFNRFNNMQMHM 120

[Close]

BLAST of CmoCh08G005250 vs. ExPASy Swiss-Prot
Match: Q8VWG3 (Protein TRANSPARENT TESTA 1 OS=Arabidopsis thaliana OX=3702 GN=TT1 PE=1 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 1.2e-07
Identity = 25/45 (55.56%), Postives = 33/45 (73.33%), Query Frame = 0


Query: 94  LPSPISGKGQFWIPTPSQILFGPSQFSCHLCSKAFNRYNNLQISL 139
           + + +SGK  +WIP P QIL G + FSCH+C K FNRYNNLQ+ +
Sbjct: 121 IENELSGKA-YWIPAPEQILIGFTHFSCHVCFKTFNRYNNLQMHM 164

[Close]

BLAST of CmoCh08G005250 vs. ExPASy Swiss-Prot
Match: Q8W030 (Zinc finger protein WIP4 OS=Arabidopsis thaliana OX=3702 GN=WIP4 PE=2 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 4.6e-07
Identity = 54/180 (30.00%), Postives = 77/180 (42.78%), Query Frame = 0


Query: 5   NYSTFFSPNSFTFIPLPPSP---PPLSPP--QALPLINTLSLETTDQPSSS--------T 64
           ++ +F+ P+  T   +  +P    P SPP  +ALPL++   +    +P+++        T
Sbjct: 96  SHDSFYYPHQTTNPNINENPNLTSPDSPPLREALPLLSLSPIHKHQEPTANHHEYYFMET 155

Query: 65  TNNHENALTLDFCLSCPTSD--LDLSTSFPPDPTGKT------------------HHDDL 124
           T    N+  LD C      D  +DL    P    G +                  HH D 
Sbjct: 156 TETSSNSNFLDQCQDSYRHDVTVDLHLGLPNLGDGGSSSSDVVLDSTDHQEGHHDHHQDQ 215

Query: 125 SPLPSPISGKG-------------QFWIPTPSQILFGPSQFSCHLCSKAFNRYNNLQISL 139
               +  S                 FWIPTPSQIL GP+QFSC LC K FNRYNN+Q+ +
Sbjct: 216 GLEVTMASDHDDEHGGLQRGNHLHHFWIPTPSQILMGPTQFSCPLCFKTFNRYNNMQMHM 275

[Close]

BLAST of CmoCh08G005250 vs. ExPASy TrEMBL
Match: A0A6J1H664 (uncharacterized protein LOC111460822 OS=Cucurbita moschata OX=3662 GN=LOC111460822 PE=4 SV=1)

HSP 1 Score: 306.2 bits (783), Expect = 1.6e-79
Identity = 145/167 (86.83%), Postives = 145/167 (86.83%), Query Frame = 0


Query: 159 MALSTCLNHSLGFPSSNGSKITACTSSNTPPIGNVSFRSAAAKRCLRCRTVYSDLDNSPS 218
           MALSTCLNHSLGFPSSNGSKITACTSSNTPPIGNVSFRSAAAKRCLRCRTVYSDLDNSPS
Sbjct: 1   MALSTCLNHSLGFPSSNGSKITACTSSNTPPIGNVSFRSAAAKRCLRCRTVYSDLDNSPS 60

Query: 219 ACAFHGHVTGSNLIVIFLFQFCLLFNRCLLTGESGLFSLSPPHQGIDGEWSDGSGVIVYK 278
           ACAFHGHV                      TGESGLFSLSPPHQGIDGEWSDGSGVIVYK
Sbjct: 61  ACAFHGHV----------------------TGESGLFSLSPPHQGIDGEWSDGSGVIVYK 120

Query: 279 WNEKGNRPNTGAGNWKRRWSCCSEYDEDAPPCRRGWHVSYDDGFTLF 326
           WNEKGNRPNTGAGNWKRRWSCCSEYDEDAPPCRRGWHVSYDDGFTLF
Sbjct: 121 WNEKGNRPNTGAGNWKRRWSCCSEYDEDAPPCRRGWHVSYDDGFTLF 145

[Close]

BLAST of CmoCh08G005250 vs. ExPASy TrEMBL
Match: A0A6J1KV96 (uncharacterized protein LOC111497902 OS=Cucurbita maxima OX=3661 GN=LOC111497902 PE=4 SV=1)

HSP 1 Score: 295.8 bits (756), Expect = 2.2e-76
Identity = 140/167 (83.83%), Postives = 141/167 (84.43%), Query Frame = 0


Query: 159 MALSTCLNHSLGFPSSNGSKITACTSSNTPPIGNVSFRSAAAKRCLRCRTVYSDLDNSPS 218
           M LSTCLN  L FPSSNGSKITACTSSNTPPIGNVSFRSAAAKRCLRCRTVYSDLDNSPS
Sbjct: 1   MELSTCLNRRLRFPSSNGSKITACTSSNTPPIGNVSFRSAAAKRCLRCRTVYSDLDNSPS 60

Query: 219 ACAFHGHVTGSNLIVIFLFQFCLLFNRCLLTGESGLFSLSPPHQGIDGEWSDGSGVIVYK 278
           ACAFHGH+                      TGESGLFSLSPPHQGIDGEWSDGSGVIVYK
Sbjct: 61  ACAFHGHI----------------------TGESGLFSLSPPHQGIDGEWSDGSGVIVYK 120

Query: 279 WNEKGNRPNTGAGNWKRRWSCCSEYDEDAPPCRRGWHVSYDDGFTLF 326
           WNEKGNRPNTGAGNWKRRWSCCSEYDEDAPPCRRGWHVSYDDGFTLF
Sbjct: 121 WNEKGNRPNTGAGNWKRRWSCCSEYDEDAPPCRRGWHVSYDDGFTLF 145

[Close]

BLAST of CmoCh08G005250 vs. ExPASy TrEMBL
Match: A0A6J1H9F0 (zinc finger protein WIP2-like OS=Cucurbita moschata OX=3662 GN=LOC111460819 PE=3 SV=1)

HSP 1 Score: 281.6 bits (719), Expect = 4.3e-72
Identity = 135/138 (97.83%), Postives = 137/138 (99.28%), Query Frame = 0


Query: 1   MTDPNYSTFFSPNSFTFIPLPPSPPPLSPPQALPLINTLSLETTDQPSSSTTNNHENALT 60
           MTDPNYSTFFSPNSFTFIPLPPSPPPLSPPQALPLINTLSLETTDQPSSSTTNNHENALT
Sbjct: 1   MTDPNYSTFFSPNSFTFIPLPPSPPPLSPPQALPLINTLSLETTDQPSSSTTNNHENALT 60

Query: 61  LDFCLSCPTSDLDLSTSFPPDPTGKTHHDDLSPLPSPISGKGQFWIPTPSQILFGPSQFS 120
           LDFCLSCPTSDLDLSTSFPPDPTGKTHHDDLSPLPSPISGKGQFWIPTPSQILFGPSQFS
Sbjct: 61  LDFCLSCPTSDLDLSTSFPPDPTGKTHHDDLSPLPSPISGKGQFWIPTPSQILFGPSQFS 120

Query: 121 CHLCSKAFNRYNNLQISL 139
           CHLCSKAFNRYNNLQ+ +
Sbjct: 121 CHLCSKAFNRYNNLQMHM 138

[Close]

BLAST of CmoCh08G005250 vs. ExPASy TrEMBL
Match: A0A6J1KWT6 (zinc finger protein WIP2-like OS=Cucurbita maxima OX=3661 GN=LOC111497861 PE=3 SV=1)

HSP 1 Score: 270.0 bits (689), Expect = 1.3e-68
Identity = 129/138 (93.48%), Postives = 133/138 (96.38%), Query Frame = 0


Query: 1   MTDPNYSTFFSPNSFTFIPLPPSPPPLSPPQALPLINTLSLETTDQPSSSTTNNHENALT 60
           MTDPNYS FFSPNSFTFIPLPPSPPPLSPPQALPLINTLSLETTDQPSSSTTNNHENALT
Sbjct: 1   MTDPNYSNFFSPNSFTFIPLPPSPPPLSPPQALPLINTLSLETTDQPSSSTTNNHENALT 60

Query: 61  LDFCLSCPTSDLDLSTSFPPDPTGKTHHDDLSPLPSPISGKGQFWIPTPSQILFGPSQFS 120
           LDFCLSCPTSDLDLSTSFPPDPTGK HH DLSPLP+PISGKGQFWIPTPSQIL GP+QFS
Sbjct: 61  LDFCLSCPTSDLDLSTSFPPDPTGKNHHADLSPLPTPISGKGQFWIPTPSQILLGPTQFS 120

Query: 121 CHLCSKAFNRYNNLQISL 139
           CHLCSKAFNRYNNLQ+ +
Sbjct: 121 CHLCSKAFNRYNNLQMHM 138

[Close]

BLAST of CmoCh08G005250 vs. ExPASy TrEMBL
Match: A0A5A7UVD3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold459G00920 PE=4 SV=1)

HSP 1 Score: 251.5 bits (641), Expect = 4.7e-63
Identity = 119/170 (70.00%), Postives = 132/170 (77.65%), Query Frame = 0


Query: 157 ASMALSTCLNHSLGFPSSNGSKITACTSSNTPPIGNVSFRSAA-AKRCLRCRTVYSDLDN 216
           ASMAL+  L+HSL FP  NGSKI AC++S  PPI + SF+S+A AKRCLRC TVYSD+DN
Sbjct: 3   ASMALAPSLSHSLTFPPWNGSKIVACSNSINPPINSTSFQSSAVAKRCLRCHTVYSDVDN 62

Query: 217 SPSACAFHGHVTGSNLIVIFLFQFCLLFNRCLLTGESGLFSLSPPHQGIDGEWSDGSGVI 276
           SPSACAFHGH+                      TGE GLF+LSPPHQGIDGEWSDGSGVI
Sbjct: 63  SPSACAFHGHI----------------------TGERGLFALSPPHQGIDGEWSDGSGVI 122

Query: 277 VYKWNEKGNRPNTGAGNWKRRWSCCSEYDEDAPPCRRGWHVSYDDGFTLF 326
           VYKWN+K NRPN+G GNWKRRWSCCSEYDE APPCRRGWHVSYDDGFTL+
Sbjct: 123 VYKWNDKSNRPNSGTGNWKRRWSCCSEYDERAPPCRRGWHVSYDDGFTLY 150

[Close]

BLAST of CmoCh08G005250 vs. NCBI nr
Match: XP_022959906.1 (uncharacterized protein LOC111460822 [Cucurbita moschata] >KAG6593308.1 hypothetical protein SDJN03_12784, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 306.2 bits (783), Expect = 3.3e-79
Identity = 145/167 (86.83%), Postives = 145/167 (86.83%), Query Frame = 0


Query: 159 MALSTCLNHSLGFPSSNGSKITACTSSNTPPIGNVSFRSAAAKRCLRCRTVYSDLDNSPS 218
           MALSTCLNHSLGFPSSNGSKITACTSSNTPPIGNVSFRSAAAKRCLRCRTVYSDLDNSPS
Sbjct: 1   MALSTCLNHSLGFPSSNGSKITACTSSNTPPIGNVSFRSAAAKRCLRCRTVYSDLDNSPS 60

Query: 219 ACAFHGHVTGSNLIVIFLFQFCLLFNRCLLTGESGLFSLSPPHQGIDGEWSDGSGVIVYK 278
           ACAFHGHV                      TGESGLFSLSPPHQGIDGEWSDGSGVIVYK
Sbjct: 61  ACAFHGHV----------------------TGESGLFSLSPPHQGIDGEWSDGSGVIVYK 120

Query: 279 WNEKGNRPNTGAGNWKRRWSCCSEYDEDAPPCRRGWHVSYDDGFTLF 326
           WNEKGNRPNTGAGNWKRRWSCCSEYDEDAPPCRRGWHVSYDDGFTLF
Sbjct: 121 WNEKGNRPNTGAGNWKRRWSCCSEYDEDAPPCRRGWHVSYDDGFTLF 145

[Close]

BLAST of CmoCh08G005250 vs. NCBI nr
Match: XP_023004680.1 (uncharacterized protein LOC111497902 [Cucurbita maxima])

HSP 1 Score: 295.8 bits (756), Expect = 4.5e-76
Identity = 140/167 (83.83%), Postives = 141/167 (84.43%), Query Frame = 0


Query: 159 MALSTCLNHSLGFPSSNGSKITACTSSNTPPIGNVSFRSAAAKRCLRCRTVYSDLDNSPS 218
           M LSTCLN  L FPSSNGSKITACTSSNTPPIGNVSFRSAAAKRCLRCRTVYSDLDNSPS
Sbjct: 1   MELSTCLNRRLRFPSSNGSKITACTSSNTPPIGNVSFRSAAAKRCLRCRTVYSDLDNSPS 60

Query: 219 ACAFHGHVTGSNLIVIFLFQFCLLFNRCLLTGESGLFSLSPPHQGIDGEWSDGSGVIVYK 278
           ACAFHGH+                      TGESGLFSLSPPHQGIDGEWSDGSGVIVYK
Sbjct: 61  ACAFHGHI----------------------TGESGLFSLSPPHQGIDGEWSDGSGVIVYK 120

Query: 279 WNEKGNRPNTGAGNWKRRWSCCSEYDEDAPPCRRGWHVSYDDGFTLF 326
           WNEKGNRPNTGAGNWKRRWSCCSEYDEDAPPCRRGWHVSYDDGFTLF
Sbjct: 121 WNEKGNRPNTGAGNWKRRWSCCSEYDEDAPPCRRGWHVSYDDGFTLF 145

[Close]

BLAST of CmoCh08G005250 vs. NCBI nr
Match: XP_022959904.1 (zinc finger protein WIP2-like [Cucurbita moschata])

HSP 1 Score: 281.6 bits (719), Expect = 8.8e-72
Identity = 135/138 (97.83%), Postives = 137/138 (99.28%), Query Frame = 0


Query: 1   MTDPNYSTFFSPNSFTFIPLPPSPPPLSPPQALPLINTLSLETTDQPSSSTTNNHENALT 60
           MTDPNYSTFFSPNSFTFIPLPPSPPPLSPPQALPLINTLSLETTDQPSSSTTNNHENALT
Sbjct: 1   MTDPNYSTFFSPNSFTFIPLPPSPPPLSPPQALPLINTLSLETTDQPSSSTTNNHENALT 60

Query: 61  LDFCLSCPTSDLDLSTSFPPDPTGKTHHDDLSPLPSPISGKGQFWIPTPSQILFGPSQFS 120
           LDFCLSCPTSDLDLSTSFPPDPTGKTHHDDLSPLPSPISGKGQFWIPTPSQILFGPSQFS
Sbjct: 61  LDFCLSCPTSDLDLSTSFPPDPTGKTHHDDLSPLPSPISGKGQFWIPTPSQILFGPSQFS 120

Query: 121 CHLCSKAFNRYNNLQISL 139
           CHLCSKAFNRYNNLQ+ +
Sbjct: 121 CHLCSKAFNRYNNLQMHM 138

[Close]

BLAST of CmoCh08G005250 vs. NCBI nr
Match: KAG6593307.1 (Zinc finger protein WIP2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 280.4 bits (716), Expect = 2.0e-71
Identity = 134/138 (97.10%), Postives = 137/138 (99.28%), Query Frame = 0


Query: 1   MTDPNYSTFFSPNSFTFIPLPPSPPPLSPPQALPLINTLSLETTDQPSSSTTNNHENALT 60
           MTDPNYSTFFSPNSFTFIPLPPSPPPLSPPQALPLINTLSLETTDQPSSSTTNNH+NALT
Sbjct: 1   MTDPNYSTFFSPNSFTFIPLPPSPPPLSPPQALPLINTLSLETTDQPSSSTTNNHQNALT 60

Query: 61  LDFCLSCPTSDLDLSTSFPPDPTGKTHHDDLSPLPSPISGKGQFWIPTPSQILFGPSQFS 120
           LDFCLSCPTSDLDLSTSFPPDPTGKTHHDDLSPLPSPISGKGQFWIPTPSQILFGPSQFS
Sbjct: 61  LDFCLSCPTSDLDLSTSFPPDPTGKTHHDDLSPLPSPISGKGQFWIPTPSQILFGPSQFS 120

Query: 121 CHLCSKAFNRYNNLQISL 139
           CHLCSKAFNRYNNLQ+ +
Sbjct: 121 CHLCSKAFNRYNNLQMHM 138

[Close]

BLAST of CmoCh08G005250 vs. NCBI nr
Match: KAG7025657.1 (Zinc finger protein WIP2, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 280.4 bits (716), Expect = 2.0e-71
Identity = 134/138 (97.10%), Postives = 137/138 (99.28%), Query Frame = 0


Query: 1   MTDPNYSTFFSPNSFTFIPLPPSPPPLSPPQALPLINTLSLETTDQPSSSTTNNHENALT 60
           MTDPNYSTFFSPNSFTFIPLPPSPPPLSPPQALPLINTLSLETTDQPSSSTTNNH+NALT
Sbjct: 1   MTDPNYSTFFSPNSFTFIPLPPSPPPLSPPQALPLINTLSLETTDQPSSSTTNNHQNALT 60

Query: 61  LDFCLSCPTSDLDLSTSFPPDPTGKTHHDDLSPLPSPISGKGQFWIPTPSQILFGPSQFS 120
           LDFCLSCPTSDLDLSTSFPPDPTGKTHHDDLSPLPSPISGKGQFWIPTPSQILFGPSQFS
Sbjct: 61  LDFCLSCPTSDLDLSTSFPPDPTGKTHHDDLSPLPSPISGKGQFWIPTPSQILFGPSQFS 120

Query: 121 CHLCSKAFNRYNNLQISL 139
           CHLCSKAFNRYNNLQ+ +
Sbjct: 121 CHLCSKAFNRYNNLQMHM 138

[Close]

BLAST of CmoCh08G005250 vs. TAIR 10
Match: AT3G57670.1 (C2H2-type zinc finger family protein )

HSP 1 Score: 64.7 bits (156), Expect = 1.6e-10
Identity = 44/118 (37.29%), Postives = 60/118 (50.85%), Query Frame = 0


Query: 27  LSPPQALPLINTLSLETTDQPSSSTTNNHENALTLDFCLSCPTSDLDLSTSFPPDPTGKT 86
           L  P A  + + L + ++   SS TT++HE+               DL   +     G  
Sbjct: 130 LPSPSAQEMASLLMMSSSSS-SSRTTHHHEDM----------NHKKDLDHEYSHGAVGGG 189

Query: 87  HHDDLSPLPSP----IS--GKGQFWIPTPSQILFGPSQFSCHLCSKAFNRYNNLQISL 139
             DD   +       IS   KGQ+WIPTPSQIL GP+QFSC +C K FNRYNN+Q+ +
Sbjct: 190 EDDDEDSVGGDGGCRISRLNKGQYWIPTPSQILIGPTQFSCPVCFKTFNRYNNMQMHM 236

[Close]

BLAST of CmoCh08G005250 vs. TAIR 10
Match: AT1G51220.1 (WIP domain protein 5 )

HSP 1 Score: 61.6 bits (148), Expect = 1.3e-09
Identity = 50/164 (30.49%), Postives = 75/164 (45.73%), Query Frame = 0


Query: 2   TDPNYSTFFSPNSFTFIPLPPSPPPLSPPQALPLINTLSLETTDQPS----------SST 61
           T+PNY       S +     P+ PPL   +ALPL++   +   +Q            SS+
Sbjct: 41  TNPNYINHTHTTSTS-----PNSPPLR--EALPLLSLSPIRHQEQQDQHYFMDTHQISSS 100

Query: 62  TNNHENALTLDFCLSCPTSDL--DLSTSFPPDPTG---------------KTHHDDLSPL 121
               +  +T+D  L  P   +   + ++  PD T                ++H DD    
Sbjct: 101 NFLDDPLVTVDLHLGLPNYGVGESIRSNIAPDATTDEQDQDHDRGVEVTVESHLDDDDDH 160

Query: 122 PSPISGKGQFWIPTPSQILFGPSQFSCHLCSKAFNRYNNLQISL 139
              +     +WIPTPSQIL GP+QF+C LC K FNRYNN+Q+ +
Sbjct: 161 HGDLHRGHHYWIPTPSQILIGPTQFTCPLCFKTFNRYNNMQMHM 197

[Close]

BLAST of CmoCh08G005250 vs. TAIR 10
Match: AT1G13290.1 (C2H2-like zinc finger protein )

HSP 1 Score: 61.2 bits (147), Expect = 1.7e-09
Identity = 42/117 (35.90%), Postives = 64/117 (54.70%), Query Frame = 0


Query: 27  LSPP-QALPLINTLSLETTDQPSSSTTNNH----ENALTLDFCLSCPTSDLDLSTSFPPD 86
           L PP Q  P  N     T+ +PSS    NH     N +T+   +  P+SD +        
Sbjct: 20  LGPPGQQYPSHNK---PTSTKPSSDHEFNHPLTNPNGVTVALHIGPPSSDKETL------ 79

Query: 87  PTGKTHHDDLSPLPSPISGKGQFWIPTPSQILFGPSQFSCHLCSKAFNRYNNLQISL 139
            +G  + + L+      + +GQ+WIP+ SQIL GP+QFSC +C+K FNR+NN+Q+ +
Sbjct: 80  -SGGNNQEGLT------ARQGQYWIPSLSQILVGPTQFSCSVCNKTFNRFNNMQMHM 120

[Close]

BLAST of CmoCh08G005250 vs. TAIR 10
Match: AT1G34790.1 (C2H2 and C2HC zinc fingers superfamily protein )

HSP 1 Score: 58.9 bits (141), Expect = 8.6e-09
Identity = 25/45 (55.56%), Postives = 33/45 (73.33%), Query Frame = 0


Query: 94  LPSPISGKGQFWIPTPSQILFGPSQFSCHLCSKAFNRYNNLQISL 139
           + + +SGK  +WIP P QIL G + FSCH+C K FNRYNNLQ+ +
Sbjct: 121 IENELSGKA-YWIPAPEQILIGFTHFSCHVCFKTFNRYNNLQMHM 164

[Close]

BLAST of CmoCh08G005250 vs. TAIR 10
Match: AT3G20880.1 (WIP domain protein 4 )

HSP 1 Score: 57.0 bits (136), Expect = 3.3e-08
Identity = 54/180 (30.00%), Postives = 77/180 (42.78%), Query Frame = 0


Query: 5   NYSTFFSPNSFTFIPLPPSP---PPLSPP--QALPLINTLSLETTDQPSSS--------T 64
           ++ +F+ P+  T   +  +P    P SPP  +ALPL++   +    +P+++        T
Sbjct: 96  SHDSFYYPHQTTNPNINENPNLTSPDSPPLREALPLLSLSPIHKHQEPTANHHEYYFMET 155

Query: 65  TNNHENALTLDFCLSCPTSD--LDLSTSFPPDPTGKT------------------HHDDL 124
           T    N+  LD C      D  +DL    P    G +                  HH D 
Sbjct: 156 TETSSNSNFLDQCQDSYRHDVTVDLHLGLPNLGDGGSSSSDVVLDSTDHQEGHHDHHQDQ 215

Query: 125 SPLPSPISGKG-------------QFWIPTPSQILFGPSQFSCHLCSKAFNRYNNLQISL 139
               +  S                 FWIPTPSQIL GP+QFSC LC K FNRYNN+Q+ +
Sbjct: 216 GLEVTMASDHDDEHGGLQRGNHLHHFWIPTPSQILMGPTQFSCPLCFKTFNRYNNMQMHM 275

The following BLAST results are available for this feature:

BLAST of CmoCh08G005250 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SVY1	2.2e-09	37.29	Zinc finger protein WIP2 OS=Arabidopsis thaliana OX=3702 GN=WIP2 PE=1 SV=1	[more]
Q8W031	1.9e-08	30.49	Zinc finger protein WIP5 OS=Arabidopsis thaliana OX=3702 GN=WIP5 PE=2 SV=1	[more]
Q9FX68	2.4e-08	35.90	Zinc finger protein WIP6 OS=Arabidopsis thaliana OX=3702 GN=WIP6 PE=2 SV=1	[more]
Q8VWG3	1.2e-07	55.56	Protein TRANSPARENT TESTA 1 OS=Arabidopsis thaliana OX=3702 GN=TT1 PE=1 SV=1	[more]
Q8W030	4.6e-07	30.00	Zinc finger protein WIP4 OS=Arabidopsis thaliana OX=3702 GN=WIP4 PE=2 SV=1	[more]

BLAST of CmoCh08G005250 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1H664	1.6e-79	86.83	uncharacterized protein LOC111460822 OS=Cucurbita moschata OX=3662 GN=LOC1114608...	[more]
A0A6J1KV96	2.2e-76	83.83	uncharacterized protein LOC111497902 OS=Cucurbita maxima OX=3661 GN=LOC111497902...	[more]
A0A6J1H9F0	4.3e-72	97.83	zinc finger protein WIP2-like OS=Cucurbita moschata OX=3662 GN=LOC111460819 PE=3...	[more]
A0A6J1KWT6	1.3e-68	93.48	zinc finger protein WIP2-like OS=Cucurbita maxima OX=3661 GN=LOC111497861 PE=3 S...	[more]
A0A5A7UVD3	4.7e-63	70.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of CmoCh08G005250 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022959906.1	3.3e-79	86.83	uncharacterized protein LOC111460822 [Cucurbita moschata] >KAG6593308.1 hypothet...	[more]
XP_023004680.1	4.5e-76	83.83	uncharacterized protein LOC111497902 [Cucurbita maxima]	[more]
XP_022959904.1	8.8e-72	97.83	zinc finger protein WIP2-like [Cucurbita moschata]	[more]
KAG6593307.1	2.0e-71	97.10	Zinc finger protein WIP2, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAG7025657.1	2.0e-71	97.10	Zinc finger protein WIP2, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]

BLAST of CmoCh08G005250 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G57670.1	1.6e-10	37.29	C2H2-type zinc finger family protein	[more]
AT1G51220.1	1.3e-09	30.49	WIP domain protein 5	[more]
AT1G13290.1	1.7e-09	35.90	C2H2-like zinc finger protein	[more]
AT1G34790.1	8.6e-09	55.56	C2H2 and C2HC zinc fingers superfamily protein	[more]
AT3G20880.1	3.3e-08	30.00	WIP domain protein 4	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35106	BNAA07G25190D PROTEIN	coord: 248..325
None	No IPR available	PANTHER	PTHR35106	BNAA07G25190D PROTEIN	coord: 174..229
None	No IPR available	PANTHER	PTHR35106:SF4	OS09G0485800 PROTEIN	coord: 174..229
None	No IPR available	PANTHER	PTHR35106:SF4	OS09G0485800 PROTEIN	coord: 248..325

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh08G005250.1	CmoCh08G005250.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003700	DNA-binding transcription factor activity