CmoCh08G005060 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh08G005060
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Unknown protein
Location	Cmo_Chr08: 3154637 .. 3154984 (+)
RNA-Seq Expression	CmoCh08G005060
Synteny	CmoCh08G005060

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGAGGTTCATCGATGTTCTTGACGCTAGCGTCAGGATTGTTGCCAGATTTCATTCGCATTGTCCTCAAACTGGCCGGATGTACTACCATCCGCCGGCTAACTCCGACGATGGCCATCATTCTGACAACCAGGAGGAGCTTCGCCTCGGGGACGGCGCTCGCGGCGGTGATGTGTCGTCTAATCAGATCGTTCGTTGTGATGCTGAGGCTGAGGCCGAGGCCGCGGTCGCGGCCGCCGTTCTCGGCTGCGATGTGTCGTCTCATCAGGTTATTCGTTGTGGTGCCGAGGCCGCCGTTCTCGGCGGCGGCGTTGAGAGTAATGAGTTTATTCTTTACTCTGTCTGA

mRNA sequence

ATGGGGAGGTTCATCGATGTTCTTGACGCTAGCGTCAGGATTGTTGCCAGATTTCATTCGCATTGTCCTCAAACTGGCCGGATGTACTACCATCCGCCGGCTAACTCCGACGATGGCCATCATTCTGACAACCAGGAGGAGCTTCGCCTCGGGGACGGCGCTCGCGGCGGTGATGTGTCGTCTAATCAGATCGTTCGTTGTGATGCTGAGGCTGAGGCCGAGGCCGCGGTCGCGGCCGCCGTTCTCGGCTGCGATGTGTCGTCTCATCAGGTTATTCGTTGTGGTGCCGAGGCCGCCGTTCTCGGCGGCGGCGTTGAGAGTAATGAGTTTATTCTTTACTCTGTCTGA

Coding sequence (CDS)

ATGGGGAGGTTCATCGATGTTCTTGACGCTAGCGTCAGGATTGTTGCCAGATTTCATTCGCATTGTCCTCAAACTGGCCGGATGTACTACCATCCGCCGGCTAACTCCGACGATGGCCATCATTCTGACAACCAGGAGGAGCTTCGCCTCGGGGACGGCGCTCGCGGCGGTGATGTGTCGTCTAATCAGATCGTTCGTTGTGATGCTGAGGCTGAGGCCGAGGCCGCGGTCGCGGCCGCCGTTCTCGGCTGCGATGTGTCGTCTCATCAGGTTATTCGTTGTGGTGCCGAGGCCGCCGTTCTCGGCGGCGGCGTTGAGAGTAATGAGTTTATTCTTTACTCTGTCTGA

Protein sequence

MGRFIDVLDASVRIVARFHSHCPQTGRMYYHPPANSDDGHHSDNQEELRLGDGARGGDVSSNQIVRCDAEAEAEAAVAAAVLGCDVSSHQVIRCGAEAAVLGGGVESNEFILYSV

Homology

[Close]

BLAST of CmoCh08G005060 vs. ExPASy TrEMBL
Match: A0A0A0K6I8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G426490 PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 7.6e-24
Identity = 68/115 (59.13%), Postives = 74/115 (64.35%), Query Frame = 0


Query: 1   MGRFIDVLDASVRIVARFHSHCPQTGRMYYHPPANSDDGHHSDNQEELRLGDGARGGDVS 60
           MG+ +++LDA  RIVARFHSHCPQTGRMYYHPPANSDDGHHS   EE RLG G   GD +
Sbjct: 1   MGKLVEILDAGARIVARFHSHCPQTGRMYYHPPANSDDGHHS---EEFRLGGGVGDGDAA 60

Query: 61  SNQIVRCDAEAEAEAAVAAAVLGCDVSSHQVIRCGAEAAVLGGGVESNEFILYSV 116
           S+QIV C AE  A AA                     AAVL   VESNEFILYSV
Sbjct: 61  SHQIVPCVAEPTAAAA---------------------AAVLVVTVESNEFILYSV 91

[Close]

BLAST of CmoCh08G005060 vs. ExPASy TrEMBL
Match: A0A5A7UTW3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold339G00730 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 8.4e-23
Identity = 66/115 (57.39%), Postives = 72/115 (62.61%), Query Frame = 0


Query: 1   MGRFIDVLDASVRIVARFHSHCPQTGRMYYHPPANSDDGHHSDNQEELRLGDGARGGDVS 60
           MG+ +++LDA  RIVARFHSHCPQTGRMYYHPPANSDDGHHS   EE RLG G   GD +
Sbjct: 1   MGKLVEILDAGARIVARFHSHCPQTGRMYYHPPANSDDGHHS---EEFRLGGGGGDGDAA 60

Query: 61  SNQIVRCDAEAEAEAAVAAAVLGCDVSSHQVIRCGAEAAVLGGGVESNEFILYSV 116
           S+QIVRCD  AE  AA    V                       VESNEFILYSV
Sbjct: 61  SHQIVRCDV-AERTAAAFLVVT----------------------VESNEFILYSV 89

[Close]

BLAST of CmoCh08G005060 vs. ExPASy TrEMBL
Match: A0A5D3CEL3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold459G00500 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 4.2e-22
Identity = 67/117 (57.26%), Postives = 73/117 (62.39%), Query Frame = 0


Query: 1   MGRFIDVLDASVRIVARFHSHCPQTGRMYYHPPANSDDGHHSDNQEELRLGDGARG--GD 60
           MG+ +++LDA  RIVARFHSHCPQTGRMYYHPPANSDDGHHS   EE RLG G  G  GD
Sbjct: 1   MGKLVEILDAGARIVARFHSHCPQTGRMYYHPPANSDDGHHS---EEFRLGGGGGGGDGD 60

Query: 61  VSSNQIVRCDAEAEAEAAVAAAVLGCDVSSHQVIRCGAEAAVLGGGVESNEFILYSV 116
            +S+QIVRCD  AE  AA    V                       VESNEFILYSV
Sbjct: 61  AASHQIVRCDV-AERTAAAFLVVT----------------------VESNEFILYSV 91

[Close]

BLAST of CmoCh08G005060 vs. ExPASy TrEMBL
Match: A0A6J1JW88 (uncharacterized protein LOC111488441 OS=Cucurbita maxima OX=3661 GN=LOC111488441 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 3.6e-18
Identity = 52/78 (66.67%), Postives = 59/78 (75.64%), Query Frame = 0


Query: 1  MGRFIDVLDASVRIVARFHSHCPQTGRMYYHPPANSDDGHHSDNQEELRLGDGARGGDVS 60
          MG+F+++LDA VRIVARFHSHCPQT RMYYHPPANS++GHHSD Q E RL      GDVS
Sbjct: 1  MGKFVEILDAGVRIVARFHSHCPQTARMYYHPPANSNEGHHSDLQ-EFRLS----SGDVS 60

Query: 61 SNQIVRCDAEAEAEAAVA 79
          S+QIV C A A   A  A
Sbjct: 61 SHQIVPCSAAAAVVAVSA 73

[Close]

BLAST of CmoCh08G005060 vs. ExPASy TrEMBL
Match: W9R4I1 (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_004679 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 9.0e-17
Identity = 53/115 (46.09%), Postives = 67/115 (58.26%), Query Frame = 0


Query: 1   MGRFIDVLDASVRIVARFHSHCPQTGRMYYHPPANSDDGHHSDNQEELRLGDGARGGDVS 60
           MG+F+++LD  VRIVARFHSHCPQT RMYYHPPAN+D+ HH++N      GDG   GDV 
Sbjct: 1   MGKFVEILDQGVRIVARFHSHCPQTSRMYYHPPANADNNHHNNNHFLFYGGDGG-DGDV- 60

Query: 61  SNQIVRCDAEAEAEAAVAAAVLGCDVSSHQVIRCGAEAAVLGGGVESNEFILYSV 116
                                        +V++CG +A  +GGG E+ EFILYSV
Sbjct: 61  -----------------------------KVMKCGPKA--IGGGAENKEFILYSV 82

[Close]

BLAST of CmoCh08G005060 vs. NCBI nr
Match: KAG7025639.1 (hypothetical protein SDJN02_12136, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 224.6 bits (571), Expect = 4.5e-55
Identity = 113/115 (98.26%), Postives = 114/115 (99.13%), Query Frame = 0


Query: 1   MGRFIDVLDASVRIVARFHSHCPQTGRMYYHPPANSDDGHHSDNQEELRLGDGARGGDVS 60
           MGRFIDVLDASVRIVARFHSHCPQTGRMYYHPPANSDDGHHSDNQEELRLGDGARGGDVS
Sbjct: 1   MGRFIDVLDASVRIVARFHSHCPQTGRMYYHPPANSDDGHHSDNQEELRLGDGARGGDVS 60

Query: 61  SNQIVRCDAEAEAEAAVAAAVLGCDVSSHQVIRCGAEAAVLGGGVESNEFILYSV 116
           SNQIVRCDAEAEAEAAVAAAVLG DVSSHQVIRCGAEAAV+GGGVESNEFILYSV
Sbjct: 61  SNQIVRCDAEAEAEAAVAAAVLGGDVSSHQVIRCGAEAAVVGGGVESNEFILYSV 115

[Close]

BLAST of CmoCh08G005060 vs. NCBI nr
Match: KAG6593287.1 (hypothetical protein SDJN03_12763, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 220.3 bits (560), Expect = 8.5e-54
Identity = 111/115 (96.52%), Postives = 112/115 (97.39%), Query Frame = 0


Query: 1   MGRFIDVLDASVRIVARFHSHCPQTGRMYYHPPANSDDGHHSDNQEELRLGDGARGGDVS 60
           MGRFIDVLDASVRIVARFHSHCPQTGRMYYHPPANSDDGHHSDNQEELRLGDG RGGDVS
Sbjct: 1   MGRFIDVLDASVRIVARFHSHCPQTGRMYYHPPANSDDGHHSDNQEELRLGDGTRGGDVS 60

Query: 61  SNQIVRCDAEAEAEAAVAAAVLGCDVSSHQVIRCGAEAAVLGGGVESNEFILYSV 116
           SNQIVRCDAEAEAEAAVAAAVLG DVSSHQVIRCGAEAAV+GGGV SNEFILYSV
Sbjct: 61  SNQIVRCDAEAEAEAAVAAAVLGGDVSSHQVIRCGAEAAVVGGGVVSNEFILYSV 115

[Close]

BLAST of CmoCh08G005060 vs. NCBI nr
Match: KGN45108.1 (hypothetical protein Csa_015813 [Cucumis sativus])

HSP 1 Score: 119.8 bits (299), Expect = 1.6e-23
Identity = 68/115 (59.13%), Postives = 74/115 (64.35%), Query Frame = 0


Query: 1   MGRFIDVLDASVRIVARFHSHCPQTGRMYYHPPANSDDGHHSDNQEELRLGDGARGGDVS 60
           MG+ +++LDA  RIVARFHSHCPQTGRMYYHPPANSDDGHHS   EE RLG G   GD +
Sbjct: 1   MGKLVEILDAGARIVARFHSHCPQTGRMYYHPPANSDDGHHS---EEFRLGGGVGDGDAA 60

Query: 61  SNQIVRCDAEAEAEAAVAAAVLGCDVSSHQVIRCGAEAAVLGGGVESNEFILYSV 116
           S+QIV C AE  A AA                     AAVL   VESNEFILYSV
Sbjct: 61  SHQIVPCVAEPTAAAA---------------------AAVLVVTVESNEFILYSV 91

[Close]

BLAST of CmoCh08G005060 vs. NCBI nr
Match: KAA0058604.1 (hypothetical protein E6C27_scaffold339G00730 [Cucumis melo var. makuwa])

HSP 1 Score: 116.3 bits (290), Expect = 1.7e-22
Identity = 66/115 (57.39%), Postives = 72/115 (62.61%), Query Frame = 0


Query: 1   MGRFIDVLDASVRIVARFHSHCPQTGRMYYHPPANSDDGHHSDNQEELRLGDGARGGDVS 60
           MG+ +++LDA  RIVARFHSHCPQTGRMYYHPPANSDDGHHS   EE RLG G   GD +
Sbjct: 1   MGKLVEILDAGARIVARFHSHCPQTGRMYYHPPANSDDGHHS---EEFRLGGGGGDGDAA 60

Query: 61  SNQIVRCDAEAEAEAAVAAAVLGCDVSSHQVIRCGAEAAVLGGGVESNEFILYSV 116
           S+QIVRCD  AE  AA    V                       VESNEFILYSV
Sbjct: 61  SHQIVRCDV-AERTAAAFLVVT----------------------VESNEFILYSV 89

[Close]

BLAST of CmoCh08G005060 vs. NCBI nr
Match: TYK10407.1 (hypothetical protein E5676_scaffold459G00500 [Cucumis melo var. makuwa])

HSP 1 Score: 114.0 bits (284), Expect = 8.6e-22
Identity = 67/117 (57.26%), Postives = 73/117 (62.39%), Query Frame = 0


Query: 1   MGRFIDVLDASVRIVARFHSHCPQTGRMYYHPPANSDDGHHSDNQEELRLGDGARG--GD 60
           MG+ +++LDA  RIVARFHSHCPQTGRMYYHPPANSDDGHHS   EE RLG G  G  GD
Sbjct: 1   MGKLVEILDAGARIVARFHSHCPQTGRMYYHPPANSDDGHHS---EEFRLGGGGGGGDGD 60

Query: 61  VSSNQIVRCDAEAEAEAAVAAAVLGCDVSSHQVIRCGAEAAVLGGGVESNEFILYSV 116
            +S+QIVRCD  AE  AA    V                       VESNEFILYSV
Sbjct: 61  AASHQIVRCDV-AERTAAAFLVVT----------------------VESNEFILYSV 91

[Close]

BLAST of CmoCh08G005060 vs. TAIR 10
Match: AT3G57450.1 (unknown protein; Has 65 Blast hits to 65 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 65; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 69.7 bits (169), Expect = 1.7e-12
Identity = 33/65 (50.77%), Postives = 43/65 (66.15%), Query Frame = 0


Query: 1  MGRFIDVLDASVRIVARFHSHCPQTGRMYYHPPANSDDGHHSDNQEELRLGDGARGGDVS 60
          MG++ ++LD  VRI ARFHSHCPQT R+YYHPP  SD+ HH    ++L  G G  G   +
Sbjct: 1  MGKYTEMLDVGVRIAARFHSHCPQTARLYYHPP--SDNHHHHGGVKDLIGGGGVLGSGQN 60

Query: 61 SNQIV 66
          S  +V
Sbjct: 61 STGLV 63

The following BLAST results are available for this feature:

BLAST of CmoCh08G005060 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh08G005060 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K6I8	7.6e-24	59.13	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G426490 PE=4 SV=1	[more]
A0A5A7UTW3	8.4e-23	57.39	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3CEL3	4.2e-22	57.26	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A6J1JW88	3.6e-18	66.67	uncharacterized protein LOC111488441 OS=Cucurbita maxima OX=3661 GN=LOC111488441...	[more]
W9R4I1	9.0e-17	46.09	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_004679 PE=4 SV=1	[more]

BLAST of CmoCh08G005060 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7025639.1	4.5e-55	98.26	hypothetical protein SDJN02_12136, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6593287.1	8.5e-54	96.52	hypothetical protein SDJN03_12763, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KGN45108.1	1.6e-23	59.13	hypothetical protein Csa_015813 [Cucumis sativus]	[more]
KAA0058604.1	1.7e-22	57.39	hypothetical protein E6C27_scaffold339G00730 [Cucumis melo var. makuwa]	[more]
TYK10407.1	8.6e-22	57.26	hypothetical protein E5676_scaffold459G00500 [Cucumis melo var. makuwa]	[more]

BLAST of CmoCh08G005060 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G57450.1	1.7e-12	50.77	unknown protein; Has 65 Blast hits to 65 proteins in 11 species: Archae - 0; Bac...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 34..53
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 27..58
None	No IPR available	PANTHER	PTHR33983	OS07G0185900 PROTEIN	coord: 1..82
None	No IPR available	PANTHER	PTHR33983:SF10	SUBFAMILY NOT NAMED	coord: 1..82

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh08G005060.1	CmoCh08G005060.1	mRNA