CmoCh08G004950 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh08G004950
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	60S ribosomal protein L44
Location	Cmo_Chr08: 3079166 .. 3080809 (-)
RNA-Seq Expression	CmoCh08G004950
Synteny	CmoCh08G004950

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAGAGATTTTATGTCATACCATTTGGTCGCCGATTAGGGTTTCTTCTTAGAGCTAGTAAGGACCAGAAGCCGCCATGGTAATCTTGCTTCCACTGTTCTTTTAGTTTTTTTTTTTATCCGTCTGTTCATGATTGTTGCTGTTTGGTAATGAGGATTTAAGTGGAAATGAGAAGACGGAAGCATCTTCCTTCCTATGATATTATCCTATTTGATTCCGAACGCTGCAAGCTAAAGCTTCGTAAAGTTATTTTTGACATGAGCTAATATTGACGGTTTTCGGAGGCTAATAGTTAAGTGAATGTGTCGTAAGTATATTTGTAGTCTAGGATATCGGATTGATTGATTTTCGGAATCGTTTTGGTTGTTTTACTTTCGAGAGTTGGCATTTATGAAGGACATTATTCTTTTTGAAGGTTATGTTGTTCTGTGCAGTGTGGTTATCTGTGTTTTATTTAGTTACGTTGTTTTTTTTGTAAGTGTTAATGTTGTAGATCTGGATTTAATATGCTCGAATTGAGAACCAAATCTGTAAGTCTAGACTCTAGAGGCAAGATATGCCATAGAAAACTGGCTTTGAAATTCATTGAAGAACATGTTCGCTCTGGTTTCTCTGTTCAAGCACTTATTGTATAATTTCCAGTTATGTTTTACTCTGCCAGATTTTCAGCTAATTTCGAAGTTTTTTATATCTCTCATGGAGTTGTTCTAATTTATGATCTTAAAATTCTTCTCTGTTATGTTAAATGATAATGAATTTTTCTACTAATTAGGTGAACGTTCCCAAGACGAAGAAGACTTACTGCAAGAGCAAGGAATGCAAAAAGCATACCTTGCACAAGGTTACCCAGTACAAAAAGGGCAAGGATAGTCTTGCTGCCCAAGGAAAGCGTCGTTATGATCGTAAACAATCAGGATACGGGGGCCAGACCAAGCCTGTCTTTCACAAGAAGGTGAAAATCTCTTCCATATCTACTCTAACCCAAACCATATTTTGCACATTTTCCCTCGAATAAATAATCATGAGAGCTTTAATTTCCCTGCCAGGCCAAAACTACCAAGAAGATTGTGCTGAGGTTGCAATGCCAGGGTTGCAAGCATGTGTCACAGCATGCCATTAAGGTTTGTATTATCTTACGTGAACTCTTCTTGCATAGAACACTTAATACCATTGTCTTTCAATTTCTGTTTCATTAATGCCTACCTTCACATTTATGCAGAGATGCAAGCATTTTGAGATTGGTGGAGACAAGAAGGGAAAGGGAACTTCACTTTTTTAGATGCTTTAACATTGTCATTCACTATATATTGGTTTTTAGGGAGCCAAAATTGTGGGTTTCTTCTGCCCTATGCTTTTTGTTTGGTTATTCTGATATTTGTGAACACTTTTACCCGTTGAATTTTGTTTATTGCATCAGTTTATAATGGAACTAGCTAGCCTCTACCTTTTTTCTGTTTATCACTTGTTTTAACTCCACAGTTCATTTTTCTTTCTTGGCTAACAATTGTTATAAGTTCATATTTTGGCAATTTGCTGGTGCTACCAACCTTGTTGGATTTGTTTATTGTGGTAGTTTCTATTTCTGATGCTTTTATAAGAATTTGACATTTTGTAGCCTGTGTTTATCATAGTTGTTCAAAGCGGAG

mRNA sequence

GAGAGATTTTATGTCATACCATTTGGTCGCCGATTAGGGTTTCTTCTTAGAGCTAGTAAGGACCAGAAGCCGCCATGGTGAACGTTCCCAAGACGAAGAAGACTTACTGCAAGAGCAAGGAATGCAAAAAGCATACCTTGCACAAGGTTACCCAGTACAAAAAGGGCAAGGATAGTCTTGCTGCCCAAGGAAAGCGTCGTTATGATCGTAAACAATCAGGATACGGGGGCCAGACCAAGCCTGTCTTTCACAAGAAGGCCAAAACTACCAAGAAGATTGTGCTGAGGTTGCAATGCCAGGGTTGCAAGCATGTGTCACAGCATGCCATTAAGAGATGCAAGCATTTTGAGATTGGTGGAGACAAGAAGGGAAAGGGAACTTCACTTTTTTAGATGCTTTAACATTGTCATTCACTATATATTGGTTTTTAGGGAGCCAAAATTGTGGGTTTCTTCTGCCCTATGCTTTTTGTTTGGTTATTCTGATATTTGTGAACACTTTTACCCGTTGAATTTTGTTTATTGCATCAGTTTATAATGGAACTAGCTAGCCTCTACCTTTTTTCTGTTTATCACTTGTTTTAACTCCACAGTTCATTTTTCTTTCTTGGCTAACAATTGTTATAAGTTCATATTTTGGCAATTTGCTGGTGCTACCAACCTTGTTGGATTTGTTTATTGTGGTAGTTTCTATTTCTGATGCTTTTATAAGAATTTGACATTTTGTAGCCTGTGTTTATCATAGTTGTTCAAAGCGGAG

Coding sequence (CDS)

ATGGTGAACGTTCCCAAGACGAAGAAGACTTACTGCAAGAGCAAGGAATGCAAAAAGCATACCTTGCACAAGGTTACCCAGTACAAAAAGGGCAAGGATAGTCTTGCTGCCCAAGGAAAGCGTCGTTATGATCGTAAACAATCAGGATACGGGGGCCAGACCAAGCCTGTCTTTCACAAGAAGGCCAAAACTACCAAGAAGATTGTGCTGAGGTTGCAATGCCAGGGTTGCAAGCATGTGTCACAGCATGCCATTAAGAGATGCAAGCATTTTGAGATTGGTGGAGACAAGAAGGGAAAGGGAACTTCACTTTTTTAG

Protein sequence

MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKGTSLF

Homology

[Close]

BLAST of CmoCh08G004950 vs. ExPASy Swiss-Prot
Match: Q96499 (60S ribosomal protein L44 OS=Gossypium hirsutum OX=3635 GN=RPL44 PE=3 SV=3)

HSP 1 Score: 213.0 bits (541), Expect = 1.6e-54
Identity = 103/105 (98.10%), Postives = 104/105 (99.05%), Query Frame = 0


Query: 1   MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60
           MVNVPKTKKTYCKSKEC+KHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 1   MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 61  KAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKGTSLF 106
           KAKTTKKIVLRLQCQGCKHVSQH IKRCKHFEIGGDKKGKGTSLF
Sbjct: 61  KAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 105

[Close]

BLAST of CmoCh08G004950 vs. ExPASy Swiss-Prot
Match: O23290 (60S ribosomal protein L36a OS=Arabidopsis thaliana OX=3702 GN=RPL36AA PE=3 SV=3)

HSP 1 Score: 203.4 bits (516), Expect = 1.3e-51
Identity = 98/105 (93.33%), Postives = 100/105 (95.24%), Query Frame = 0


Query: 1   MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60
           MVN+PKTK TYCK+KECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 1   MVNIPKTKNTYCKNKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 61  KAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKGTSLF 106
           KAKTTKKIVLRLQCQ CKH SQ  IKRCKHFEIGGDKKGKGTSLF
Sbjct: 61  KAKTTKKIVLRLQCQSCKHFSQRPIKRCKHFEIGGDKKGKGTSLF 105

[Close]

BLAST of CmoCh08G004950 vs. ExPASy Swiss-Prot
Match: O59870 (60S ribosomal protein L44 OS=Phaffia rhodozyma OX=264483 GN=RPL44 PE=3 SV=3)

HSP 1 Score: 174.5 bits (441), Expect = 6.4e-43
Identity = 82/104 (78.85%), Postives = 92/104 (88.46%), Query Frame = 0


Query: 1   MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60
           MVNVPKT++TYCK K CKKHT HKVTQYKKGKDS+ AQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 1   MVNVPKTRRTYCKGKACKKHTPHKVTQYKKGKDSIFAQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 61  KAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKGTSL 105
           KAKTTKK+VLRL+C  CK+  Q  +KRCKHFE+GGDKK KG ++
Sbjct: 61  KAKTTKKVVLRLECSVCKYKMQMTLKRCKHFELGGDKKTKGAAI 104

[Close]

BLAST of CmoCh08G004950 vs. ExPASy Swiss-Prot
Match: A8PCG3 (60S ribosomal protein L44 OS=Coprinopsis cinerea (strain Okayama-7 / 130 / ATCC MYA-4618 / FGSC 9003) OX=240176 GN=RPL44 PE=3 SV=2)

HSP 1 Score: 172.9 bits (437), Expect = 1.9e-42
Identity = 81/104 (77.88%), Postives = 93/104 (89.42%), Query Frame = 0


Query: 1   MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60
           MVN+PKT++TYCK K CKKHT HKVTQYKKGKDS+ AQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 1   MVNIPKTRRTYCKGKTCKKHTPHKVTQYKKGKDSIFAQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 61  KAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKGTSL 105
           KAKTTKK+VLRL+C  CK+  Q ++KRCKHFE+GG+KK KG +L
Sbjct: 61  KAKTTKKVVLRLECTVCKYKMQVSLKRCKHFELGGEKKTKGAAL 104

[Close]

BLAST of CmoCh08G004950 vs. ExPASy Swiss-Prot
Match: Q9UWE4 (60S ribosomal protein L44 OS=Coprinopsis cinerea OX=5346 GN=RPL44 PE=3 SV=3)

HSP 1 Score: 172.9 bits (437), Expect = 1.9e-42
Identity = 81/104 (77.88%), Postives = 93/104 (89.42%), Query Frame = 0


Query: 1   MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60
           MVN+PKT++TYCK K CKKHT HKVTQYKKGKDS+ AQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 1   MVNIPKTRRTYCKGKTCKKHTPHKVTQYKKGKDSIFAQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 61  KAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKGTSL 105
           KAKTTKK+VLRL+C  CK+  Q ++KRCKHFE+GG+KK KG +L
Sbjct: 61  KAKTTKKVVLRLECTVCKYKMQVSLKRCKHFELGGEKKTKGAAL 104

[Close]

BLAST of CmoCh08G004950 vs. ExPASy TrEMBL
Match: A0A6J1KSV1 (60S ribosomal protein L44 OS=Cucurbita maxima OX=3661 GN=LOC111497918 PE=3 SV=1)

HSP 1 Score: 216.1 bits (549), Expect = 7.1e-53
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 0


Query: 1   MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60
           MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 1   MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 61  KAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKGTSLF 106
           KAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKGTSLF
Sbjct: 61  KAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKGTSLF 105

[Close]

BLAST of CmoCh08G004950 vs. ExPASy TrEMBL
Match: A0A6J1GQU0 (60S ribosomal protein L44 OS=Cucurbita moschata OX=3662 GN=LOC111456227 PE=3 SV=1)

HSP 1 Score: 216.1 bits (549), Expect = 7.1e-53
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 0


Query: 1   MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60
           MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 1   MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 61  KAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKGTSLF 106
           KAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKGTSLF
Sbjct: 61  KAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKGTSLF 105

[Close]

BLAST of CmoCh08G004950 vs. ExPASy TrEMBL
Match: A0A7J6HQ78 (Uncharacterized protein OS=Cannabis sativa OX=3483 GN=G4B88_027173 PE=3 SV=1)

HSP 1 Score: 216.1 bits (549), Expect = 7.1e-53
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 0


Query: 1   MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60
           MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 50  MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 109

Query: 61  KAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKGTSLF 106
           KAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKGTSLF
Sbjct: 110 KAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKGTSLF 154

[Close]

BLAST of CmoCh08G004950 vs. ExPASy TrEMBL
Match: A0A7J6GSC6 (Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_010378 PE=3 SV=1)

HSP 1 Score: 216.1 bits (549), Expect = 7.1e-53
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 0


Query: 1   MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60
           MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 39  MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 98

Query: 61  KAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKGTSLF 106
           KAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKGTSLF
Sbjct: 99  KAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKGTSLF 143

[Close]

BLAST of CmoCh08G004950 vs. ExPASy TrEMBL
Match: A0A803QLA4 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 216.1 bits (549), Expect = 7.1e-53
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 0


Query: 1   MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60
           MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 137 MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 196

Query: 61  KAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKGTSLF 106
           KAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKGTSLF
Sbjct: 197 KAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKGTSLF 241

[Close]

BLAST of CmoCh08G004950 vs. NCBI nr
Match: KAF4385822.1 (hypothetical protein F8388_010378 [Cannabis sativa])

HSP 1 Score: 216.1 bits (549), Expect = 1.5e-52
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 0


Query: 1   MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60
           MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 39  MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 98

Query: 61  KAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKGTSLF 106
           KAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKGTSLF
Sbjct: 99  KAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKGTSLF 143

[Close]

BLAST of CmoCh08G004950 vs. NCBI nr
Match: KZV34690.1 (hypothetical protein F511_00592 [Dorcoceras hygrometricum])

HSP 1 Score: 216.1 bits (549), Expect = 1.5e-52
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 0


Query: 1   MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60
           MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 606 MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 665

Query: 61  KAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKGTSLF 106
           KAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKGTSLF
Sbjct: 666 KAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKGTSLF 710

[Close]

BLAST of CmoCh08G004950 vs. NCBI nr
Match: KAF4397433.1 (hypothetical protein G4B88_027173 [Cannabis sativa])

HSP 1 Score: 216.1 bits (549), Expect = 1.5e-52
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 0


Query: 1   MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60
           MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 50  MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 109

Query: 61  KAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKGTSLF 106
           KAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKGTSLF
Sbjct: 110 KAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKGTSLF 154

[Close]

BLAST of CmoCh08G004950 vs. NCBI nr
Match: KAG6581552.1 (Serine carboxypeptidase-like 35, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 216.1 bits (549), Expect = 1.5e-52
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 0


Query: 1   MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60
           MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 452 MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 511

Query: 61  KAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKGTSLF 106
           KAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKGTSLF
Sbjct: 512 KAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKGTSLF 556

[Close]

BLAST of CmoCh08G004950 vs. NCBI nr
Match: XP_019152128.1 (PREDICTED: 60S ribosomal protein L44-like isoform X1 [Ipomoea nil] >XP_019152129.1 PREDICTED: 60S ribosomal protein L44-like isoform X2 [Ipomoea nil] >XP_019163351.1 PREDICTED: 60S ribosomal protein L44-like [Ipomoea nil] >XP_022934630.1 60S ribosomal protein L44 [Cucurbita moschata] >XP_022948797.1 60S ribosomal protein L44 [Cucurbita moschata] >XP_022953809.1 60S ribosomal protein L44 [Cucurbita moschata] >XP_022959528.1 60S ribosomal protein L44 [Cucurbita moschata] >XP_022982645.1 60S ribosomal protein L44 [Cucurbita maxima] >XP_022991490.1 60S ribosomal protein L44 [Cucurbita maxima] >XP_022998505.1 60S ribosomal protein L44 [Cucurbita maxima] >XP_023004701.1 60S ribosomal protein L44 [Cucurbita maxima] >XP_023514721.1 60S ribosomal protein L44 [Cucurbita pepo subsp. pepo] >XP_023524815.1 60S ribosomal protein L44 [Cucurbita pepo subsp. pepo] >XP_023526442.1 60S ribosomal protein L44 [Cucurbita pepo subsp. pepo] >XP_023548138.1 60S ribosomal protein L44 [Cucurbita pepo subsp. pepo] >XP_030484322.1 60S ribosomal protein L44 [Cannabis sativa] >XP_031100919.1 60S ribosomal protein L44-like [Ipomoea triloba] >XP_031112939.1 60S ribosomal protein L44-like [Ipomoea triloba] >XP_042496958.1 60S ribosomal protein L44-like [Macadamia integrifolia] >KAG6575717.1 60S ribosomal protein L44, partial [Cucurbita argyrosperma subsp. sororia] >KAG7018057.1 60S ribosomal protein L44 [Cucurbita argyrosperma subsp. argyrosperma] >KAG8379304.1 hypothetical protein BUALT_Bualt07G0074500 [Buddleja alternifolia] >KAG6593274.1 60S ribosomal protein L44, partial [Cucurbita argyrosperma subsp. sororia] >KAG8388755.1 hypothetical protein BUALT_Bualt02G0158300 [Buddleja alternifolia])

HSP 1 Score: 216.1 bits (549), Expect = 1.5e-52
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 0


Query: 1   MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60
           MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 1   MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 61  KAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKGTSLF 106
           KAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKGTSLF
Sbjct: 61  KAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKGTSLF 105

[Close]

BLAST of CmoCh08G004950 vs. TAIR 10
Match: AT3G23390.1 (Zinc-binding ribosomal protein family protein )

HSP 1 Score: 203.4 bits (516), Expect = 9.1e-53
Identity = 98/105 (93.33%), Postives = 100/105 (95.24%), Query Frame = 0


Query: 1   MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60
           MVN+PKTK TYCK+KECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 1   MVNIPKTKNTYCKNKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 61  KAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKGTSLF 106
           KAKTTKKIVLRLQCQ CKH SQ  IKRCKHFEIGGDKKGKGTSLF
Sbjct: 61  KAKTTKKIVLRLQCQSCKHFSQRPIKRCKHFEIGGDKKGKGTSLF 105

[Close]

BLAST of CmoCh08G004950 vs. TAIR 10
Match: AT4G14320.1 (Zinc-binding ribosomal protein family protein )

HSP 1 Score: 203.4 bits (516), Expect = 9.1e-53
Identity = 98/105 (93.33%), Postives = 100/105 (95.24%), Query Frame = 0


Query: 1   MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60
           MVN+PKTK TYCK+KECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 1   MVNIPKTKNTYCKNKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 61  KAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKGTSLF 106
           KAKTTKKIVLRLQCQ CKH SQ  IKRCKHFEIGGDKKGKGTSLF
Sbjct: 61  KAKTTKKIVLRLQCQSCKHFSQRPIKRCKHFEIGGDKKGKGTSLF 105

[Close]

BLAST of CmoCh08G004950 vs. TAIR 10
Match: AT4G14320.2 (Zinc-binding ribosomal protein family protein )

HSP 1 Score: 179.1 bits (453), Expect = 1.8e-45
Identity = 86/93 (92.47%), Postives = 88/93 (94.62%), Query Frame = 0


Query: 1  MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60
          MVN+PKTK TYCK+KECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 1  MVNIPKTKNTYCKNKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 61 KAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEI 94
          KAKTTKKIVLRLQCQ CKH SQ  IKRCKHFEI
Sbjct: 61 KAKTTKKIVLRLQCQSCKHFSQRPIKRCKHFEI 93

The following BLAST results are available for this feature:

BLAST of CmoCh08G004950 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q96499	1.6e-54	98.10	60S ribosomal protein L44 OS=Gossypium hirsutum OX=3635 GN=RPL44 PE=3 SV=3	[more]
O23290	1.3e-51	93.33	60S ribosomal protein L36a OS=Arabidopsis thaliana OX=3702 GN=RPL36AA PE=3 SV=3	[more]
O59870	6.4e-43	78.85	60S ribosomal protein L44 OS=Phaffia rhodozyma OX=264483 GN=RPL44 PE=3 SV=3	[more]
A8PCG3	1.9e-42	77.88	60S ribosomal protein L44 OS=Coprinopsis cinerea (strain Okayama-7 / 130 / ATCC ...	[more]
Q9UWE4	1.9e-42	77.88	60S ribosomal protein L44 OS=Coprinopsis cinerea OX=5346 GN=RPL44 PE=3 SV=3	[more]

BLAST of CmoCh08G004950 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KSV1	7.1e-53	100.00	60S ribosomal protein L44 OS=Cucurbita maxima OX=3661 GN=LOC111497918 PE=3 SV=1	[more]
A0A6J1GQU0	7.1e-53	100.00	60S ribosomal protein L44 OS=Cucurbita moschata OX=3662 GN=LOC111456227 PE=3 SV=...	[more]
A0A7J6HQ78	7.1e-53	100.00	Uncharacterized protein OS=Cannabis sativa OX=3483 GN=G4B88_027173 PE=3 SV=1	[more]
A0A7J6GSC6	7.1e-53	100.00	Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_010378 PE=3 SV=1	[more]
A0A803QLA4	7.1e-53	100.00	Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1	[more]

BLAST of CmoCh08G004950 vs. NCBI nr


Match Name	E-value	Identity	Description
KAF4385822.1	1.5e-52	100.00	hypothetical protein F8388_010378 [Cannabis sativa]	[more]
KZV34690.1	1.5e-52	100.00	hypothetical protein F511_00592 [Dorcoceras hygrometricum]	[more]
KAF4397433.1	1.5e-52	100.00	hypothetical protein G4B88_027173 [Cannabis sativa]	[more]
KAG6581552.1	1.5e-52	100.00	Serine carboxypeptidase-like 35, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_019152128.1	1.5e-52	100.00	PREDICTED: 60S ribosomal protein L44-like isoform X1 [Ipomoea nil] >XP_019152129...	[more]

BLAST of CmoCh08G004950 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G23390.1	9.1e-53	93.33	Zinc-binding ribosomal protein family protein	[more]
AT4G14320.1	9.1e-53	93.33	Zinc-binding ribosomal protein family protein	[more]
AT4G14320.2	1.8e-45	92.47	Zinc-binding ribosomal protein family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.10.450.80		coord: 1..105 e-value: 1.7E-51 score: 175.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 28..57
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 28..48
None	No IPR available	PANTHER	PTHR10369:SF38	60S RIBOSOMAL PROTEIN L44-LIKE	coord: 2..105
IPR000552	Ribosomal protein L44e	PFAM	PF00935	Ribosomal_L44	coord: 19..93 e-value: 7.8E-35 score: 119.2
IPR000552	Ribosomal protein L44e	PANTHER	PTHR10369	60S RIBOSOMAL PROTEIN L36A/L44	coord: 2..105
IPR000552	Ribosomal protein L44e	PROSITE	PS01172	RIBOSOMAL_L44E	coord: 63..74
IPR011332	Zinc-binding ribosomal protein	SUPERFAMILY	57829	Zn-binding ribosomal proteins	coord: 2..94

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh08G004950.1	CmoCh08G004950.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome