CmoCh08G003890 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh08G003890
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	glutaredoxin-C11
Location	Cmo_Chr08: 2411297 .. 2411605 (-)
RNA-Seq Expression	CmoCh08G003890
Synteny	CmoCh08G003890

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATAGATTGAGAAATTTGGCATCACAGAAAGCAGTAGTGATTTTTTCCAAGAGATCATGCTACATATGCCATAGCATTCAGACACTTTTTTATGAGCTTGGTGCGAGCCCTGCAGTTCACGAGCTTGATCATGAAGCAAATGGGCGAGAAGTCGATCGGGCTCTTAAAAGTCTAGGGTGCAACCCCTCTGTTCCAGCTGTGTTCATAGGAGGAAAGTTTATAGGCTCAGCAAAAGATGTTATTTCTCTCCATGTTAACGGGGATCTGAAACAAATGCTGATAGATGCGAAGGCCATCTGGTTGTAA

mRNA sequence

ATGGATAGATTGAGAAATTTGGCATCACAGAAAGCAGTAGTGATTTTTTCCAAGAGATCATGCTACATATGCCATAGCATTCAGACACTTTTTTATGAGCTTGGTGCGAGCCCTGCAGTTCACGAGCTTGATCATGAAGCAAATGGGCGAGAAGTCGATCGGGCTCTTAAAAGTCTAGGGTGCAACCCCTCTGTTCCAGCTGTGTTCATAGGAGGAAAGTTTATAGGCTCAGCAAAAGATGTTATTTCTCTCCATGTTAACGGGGATCTGAAACAAATGCTGATAGATGCGAAGGCCATCTGGTTGTAA

Coding sequence (CDS)

ATGGATAGATTGAGAAATTTGGCATCACAGAAAGCAGTAGTGATTTTTTCCAAGAGATCATGCTACATATGCCATAGCATTCAGACACTTTTTTATGAGCTTGGTGCGAGCCCTGCAGTTCACGAGCTTGATCATGAAGCAAATGGGCGAGAAGTCGATCGGGCTCTTAAAAGTCTAGGGTGCAACCCCTCTGTTCCAGCTGTGTTCATAGGAGGAAAGTTTATAGGCTCAGCAAAAGATGTTATTTCTCTCCATGTTAACGGGGATCTGAAACAAATGCTGATAGATGCGAAGGCCATCTGGTTGTAA

Protein sequence

MDRLRNLASQKAVVIFSKRSCYICHSIQTLFYELGASPAVHELDHEANGREVDRALKSLGCNPSVPAVFIGGKFIGSAKDVISLHVNGDLKQMLIDAKAIWL

Homology

[Close]

BLAST of CmoCh08G003890 vs. ExPASy Swiss-Prot
Match: Q9LYC6 (Glutaredoxin-C11 OS=Arabidopsis thaliana OX=3702 GN=GRXC11 PE=3 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 5.1e-37
Identity = 72/103 (69.90%), Postives = 92/103 (89.32%), Query Frame = 0


Query: 1   MDRLRNLASQKAVVIFSKRSCYICHSIQTLFYELGASPAVHELDHEANGREVDRALKSLG 60
           M+R+R+L+S+KA VIF+K SC +CHSI+TLFYELGASPA+HELD +  GRE++RAL++LG
Sbjct: 1   MERIRDLSSKKAAVIFTKSSCCMCHSIKTLFYELGASPAIHELDKDPEGREMERALRALG 60

Query: 61  -CNPSVPAVFIGGKFIGSAKDVISLHVNGDLKQMLIDAKAIWL 103
             NP+VPAVF+GG++IGSAKD+IS HV+G LKQML DAKAIWL
Sbjct: 61  SSNPAVPAVFVGGRYIGSAKDIISFHVDGSLKQMLKDAKAIWL 103

[Close]

BLAST of CmoCh08G003890 vs. ExPASy Swiss-Prot
Match: O82254 (Putative glutaredoxin-C12 OS=Arabidopsis thaliana OX=3702 GN=GRXC12 PE=3 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 1.5e-33
Identity = 67/103 (65.05%), Postives = 87/103 (84.47%), Query Frame = 0


Query: 1   MDRLRNLASQKAVVIFSKRSCYICHSIQTLFYELGASPAVHELDHEANGREVDRAL-KSL 60
           M+R+R+LAS+KA VIF+K SC +CHSI+TLFYELGASPA+HELD +  G +++RAL +  
Sbjct: 1   MERVRDLASEKAAVIFTKSSCCMCHSIKTLFYELGASPAIHELDKDPQGPDMERALFRVF 60

Query: 61  GCNPSVPAVFIGGKFIGSAKDVISLHVNGDLKQMLIDAKAIWL 103
           G NP+VPAVF+GG+++GSAKDVIS HV+G LKQML  + AIWL
Sbjct: 61  GSNPAVPAVFVGGRYVGSAKDVISFHVDGSLKQMLKASNAIWL 103

[Close]

BLAST of CmoCh08G003890 vs. ExPASy Swiss-Prot
Match: Q9LIF1 (Monothiol glutaredoxin-S10 OS=Arabidopsis thaliana OX=3702 GN=GRXS10 PE=3 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 9.6e-28
Identity = 56/102 (54.90%), Postives = 80/102 (78.43%), Query Frame = 0


Query: 1   MDRLRNLASQKAVVIFSKRSCYICHSIQTLFYELGASPAVHELDHEANGREVDRALKSLG 60
           MD +  LASQ+AVVIFSK +C + H+I+ LFYE G SPA+ E+D +  G++++ AL  LG
Sbjct: 1   MDVVARLASQRAVVIFSKSTCCMSHAIKRLFYEQGVSPAIVEIDQDMYGKDIEWALARLG 60

Query: 61  CNPSVPAVFIGGKFIGSAKDVISLHVNGDLKQMLIDAKAIWL 103
           C+P+VPAVF+GGKF+G+A  V++LH+NG LK +L +A A+WL
Sbjct: 61  CSPTVPAVFVGGKFVGTANTVMTLHLNGSLKILLKEAGALWL 102

[Close]

BLAST of CmoCh08G003890 vs. ExPASy Swiss-Prot
Match: O23421 (Monothiol glutaredoxin-S3 OS=Arabidopsis thaliana OX=3702 GN=GRXS3 PE=3 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 1.5e-25
Identity = 52/102 (50.98%), Postives = 75/102 (73.53%), Query Frame = 0


Query: 1   MDRLRNLASQKAVVIFSKRSCYICHSIQTLFYELGASPAVHELDHEANGREVDRALKSLG 60
           M+ L+ + S+K+VVIFSK SC + H+I+TLF +LG +P ++ELD  + G+E++ AL  LG
Sbjct: 1   MENLQKMISEKSVVIFSKNSCCMSHTIKTLFLDLGVNPTIYELDEISRGKEIEHALAQLG 60

Query: 61  CNPSVPAVFIGGKFIGSAKDVISLHVNGDLKQMLIDAKAIWL 103
           C+P+VP VFIGG+ +G A  V+SLH+N  L  ML  A A+WL
Sbjct: 61  CSPTVPVVFIGGQLVGGANQVMSLHLNRSLVPMLKRAGALWL 102

[Close]

BLAST of CmoCh08G003890 vs. ExPASy Swiss-Prot
Match: O23419 (Monothiol glutaredoxin-S4 OS=Arabidopsis thaliana OX=3702 GN=GRXS4 PE=3 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 4.5e-25
Identity = 51/102 (50.00%), Postives = 74/102 (72.55%), Query Frame = 0


Query: 1   MDRLRNLASQKAVVIFSKRSCYICHSIQTLFYELGASPAVHELDHEANGREVDRALKSLG 60
           MD+L+ + S+K+VVIFSK SC + H+I+TLF + G +P ++ELD    G+E+++AL  LG
Sbjct: 1   MDKLQKMISEKSVVIFSKNSCCMSHTIKTLFIDFGVNPTIYELDEINRGKEIEQALAQLG 60

Query: 61  CNPSVPAVFIGGKFIGSAKDVISLHVNGDLKQMLIDAKAIWL 103
           C+P+VP VFIGG+ +G A  V+SLH+N  L  ML    A+WL
Sbjct: 61  CSPTVPVVFIGGQLVGGANQVMSLHLNRSLVPMLKRVGALWL 102

[Close]

BLAST of CmoCh08G003890 vs. ExPASy TrEMBL
Match: A0A6J1H8P8 (glutaredoxin-C11 OS=Cucurbita moschata OX=3662 GN=LOC111461114 PE=3 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 1.4e-50
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 0


Query: 1   MDRLRNLASQKAVVIFSKRSCYICHSIQTLFYELGASPAVHELDHEANGREVDRALKSLG 60
           MDRLRNLASQKAVVIFSKRSCYICHSIQTLFYELGASPAVHELDHEANGREVDRALKSLG
Sbjct: 1   MDRLRNLASQKAVVIFSKRSCYICHSIQTLFYELGASPAVHELDHEANGREVDRALKSLG 60

Query: 61  CNPSVPAVFIGGKFIGSAKDVISLHVNGDLKQMLIDAKAIWL 103
           CNPSVPAVFIGGKFIGSAKDVISLHVNGDLKQMLIDAKAIWL
Sbjct: 61  CNPSVPAVFIGGKFIGSAKDVISLHVNGDLKQMLIDAKAIWL 102

[Close]

BLAST of CmoCh08G003890 vs. ExPASy TrEMBL
Match: A0A6J1L0C7 (glutaredoxin-C11-like OS=Cucurbita maxima OX=3661 GN=LOC111497924 PE=3 SV=1)

HSP 1 Score: 206.8 bits (525), Expect = 4.2e-50
Identity = 100/102 (98.04%), Postives = 102/102 (100.00%), Query Frame = 0


Query: 1   MDRLRNLASQKAVVIFSKRSCYICHSIQTLFYELGASPAVHELDHEANGREVDRALKSLG 60
           MDRLRNLASQKAVVIF+KRSCYICHSIQTLFYELGASPA+HELDHEANGREVDRALKSLG
Sbjct: 1   MDRLRNLASQKAVVIFAKRSCYICHSIQTLFYELGASPAIHELDHEANGREVDRALKSLG 60

Query: 61  CNPSVPAVFIGGKFIGSAKDVISLHVNGDLKQMLIDAKAIWL 103
           CNPSVPAVFIGGKFIGSAKDVISLHVNGDLKQMLIDAKAIWL
Sbjct: 61  CNPSVPAVFIGGKFIGSAKDVISLHVNGDLKQMLIDAKAIWL 102

[Close]

BLAST of CmoCh08G003890 vs. ExPASy TrEMBL
Match: A0A6J1JXM7 (glutaredoxin-C11-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111488793 PE=3 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 6.7e-48
Identity = 96/102 (94.12%), Postives = 99/102 (97.06%), Query Frame = 0


Query: 1   MDRLRNLASQKAVVIFSKRSCYICHSIQTLFYELGASPAVHELDHEANGREVDRALKSLG 60
           MDRLRNLASQKAVVIFSK SCYICHSIQTLFYELGASPA+HELDHEANGRE+D AL+ LG
Sbjct: 1   MDRLRNLASQKAVVIFSKSSCYICHSIQTLFYELGASPAIHELDHEANGREIDWALRGLG 60

Query: 61  CNPSVPAVFIGGKFIGSAKDVISLHVNGDLKQMLIDAKAIWL 103
           CNPSVPAVFIGGKFIGSAKDVISLHVNGDLKQMLIDAKAIWL
Sbjct: 61  CNPSVPAVFIGGKFIGSAKDVISLHVNGDLKQMLIDAKAIWL 102

[Close]

BLAST of CmoCh08G003890 vs. ExPASy TrEMBL
Match: A0A6J1GPY2 (glutaredoxin-C11-like OS=Cucurbita moschata OX=3662 GN=LOC111456468 PE=3 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 6.7e-48
Identity = 96/102 (94.12%), Postives = 99/102 (97.06%), Query Frame = 0


Query: 1   MDRLRNLASQKAVVIFSKRSCYICHSIQTLFYELGASPAVHELDHEANGREVDRALKSLG 60
           MDRLRNLASQKAVVIFSK SCYICHSIQTLFYELGASPA+HELDHEANGRE+D AL+ LG
Sbjct: 1   MDRLRNLASQKAVVIFSKSSCYICHSIQTLFYELGASPAIHELDHEANGREIDWALRGLG 60

Query: 61  CNPSVPAVFIGGKFIGSAKDVISLHVNGDLKQMLIDAKAIWL 103
           CNPSVPAVFIGGKFIGSAKDVISLHVNGDLKQMLIDAKAIWL
Sbjct: 61  CNPSVPAVFIGGKFIGSAKDVISLHVNGDLKQMLIDAKAIWL 102

[Close]

BLAST of CmoCh08G003890 vs. ExPASy TrEMBL
Match: A0A5A7VIX0 (Glutaredoxin-C11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411G00060 PE=3 SV=1)

HSP 1 Score: 198.7 bits (504), Expect = 1.1e-47
Identity = 96/102 (94.12%), Postives = 99/102 (97.06%), Query Frame = 0


Query: 1   MDRLRNLASQKAVVIFSKRSCYICHSIQTLFYELGASPAVHELDHEANGREVDRALKSLG 60
           MDRLRNLASQKAVVIFSK SCYICHSIQTLFYELGASPAVHELDH+ANGRE+D AL+ LG
Sbjct: 1   MDRLRNLASQKAVVIFSKSSCYICHSIQTLFYELGASPAVHELDHDANGREIDWALRGLG 60

Query: 61  CNPSVPAVFIGGKFIGSAKDVISLHVNGDLKQMLIDAKAIWL 103
           CNPSVPAVFIGGKFIGSAKDVISLHVNGDLKQMLIDAKAIWL
Sbjct: 61  CNPSVPAVFIGGKFIGSAKDVISLHVNGDLKQMLIDAKAIWL 102

[Close]

BLAST of CmoCh08G003890 vs. NCBI nr
Match: XP_022960368.1 (glutaredoxin-C11 [Cucurbita moschata] >XP_023514730.1 glutaredoxin-C11-like [Cucurbita pepo subsp. pepo] >KAG6593165.1 Glutaredoxin-C11, partial [Cucurbita argyrosperma subsp. sororia] >KAG7025563.1 Glutaredoxin-C11, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 208.4 bits (529), Expect = 3.0e-50
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 0


Query: 1   MDRLRNLASQKAVVIFSKRSCYICHSIQTLFYELGASPAVHELDHEANGREVDRALKSLG 60
           MDRLRNLASQKAVVIFSKRSCYICHSIQTLFYELGASPAVHELDHEANGREVDRALKSLG
Sbjct: 1   MDRLRNLASQKAVVIFSKRSCYICHSIQTLFYELGASPAVHELDHEANGREVDRALKSLG 60

Query: 61  CNPSVPAVFIGGKFIGSAKDVISLHVNGDLKQMLIDAKAIWL 103
           CNPSVPAVFIGGKFIGSAKDVISLHVNGDLKQMLIDAKAIWL
Sbjct: 61  CNPSVPAVFIGGKFIGSAKDVISLHVNGDLKQMLIDAKAIWL 102

[Close]

BLAST of CmoCh08G003890 vs. NCBI nr
Match: XP_023004708.1 (glutaredoxin-C11-like [Cucurbita maxima])

HSP 1 Score: 206.8 bits (525), Expect = 8.6e-50
Identity = 100/102 (98.04%), Postives = 102/102 (100.00%), Query Frame = 0


Query: 1   MDRLRNLASQKAVVIFSKRSCYICHSIQTLFYELGASPAVHELDHEANGREVDRALKSLG 60
           MDRLRNLASQKAVVIF+KRSCYICHSIQTLFYELGASPA+HELDHEANGREVDRALKSLG
Sbjct: 1   MDRLRNLASQKAVVIFAKRSCYICHSIQTLFYELGASPAIHELDHEANGREVDRALKSLG 60

Query: 61  CNPSVPAVFIGGKFIGSAKDVISLHVNGDLKQMLIDAKAIWL 103
           CNPSVPAVFIGGKFIGSAKDVISLHVNGDLKQMLIDAKAIWL
Sbjct: 61  CNPSVPAVFIGGKFIGSAKDVISLHVNGDLKQMLIDAKAIWL 102

[Close]

BLAST of CmoCh08G003890 vs. NCBI nr
Match: XP_022954101.1 (glutaredoxin-C11-like [Cucurbita moschata] >XP_022992474.1 glutaredoxin-C11-like isoform X2 [Cucurbita maxima] >XP_023549403.1 glutaredoxin-C11-like [Cucurbita pepo subsp. pepo] >KAG6575856.1 Glutaredoxin-C11, partial [Cucurbita argyrosperma subsp. sororia] >KAG7014392.1 Glutaredoxin-C11, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 199.5 bits (506), Expect = 1.4e-47
Identity = 96/102 (94.12%), Postives = 99/102 (97.06%), Query Frame = 0


Query: 1   MDRLRNLASQKAVVIFSKRSCYICHSIQTLFYELGASPAVHELDHEANGREVDRALKSLG 60
           MDRLRNLASQKAVVIFSK SCYICHSIQTLFYELGASPA+HELDHEANGRE+D AL+ LG
Sbjct: 1   MDRLRNLASQKAVVIFSKSSCYICHSIQTLFYELGASPAIHELDHEANGREIDWALRGLG 60

Query: 61  CNPSVPAVFIGGKFIGSAKDVISLHVNGDLKQMLIDAKAIWL 103
           CNPSVPAVFIGGKFIGSAKDVISLHVNGDLKQMLIDAKAIWL
Sbjct: 61  CNPSVPAVFIGGKFIGSAKDVISLHVNGDLKQMLIDAKAIWL 102

[Close]

BLAST of CmoCh08G003890 vs. NCBI nr
Match: XP_008451630.1 (PREDICTED: glutaredoxin-C11 [Cucumis melo] >XP_031744239.1 glutaredoxin-C11 [Cucumis sativus] >KAA0068043.1 glutaredoxin-C11-like [Cucumis melo var. makuwa] >TYK18085.1 glutaredoxin-C11-like [Cucumis melo var. makuwa])

HSP 1 Score: 198.7 bits (504), Expect = 2.3e-47
Identity = 96/102 (94.12%), Postives = 99/102 (97.06%), Query Frame = 0


Query: 1   MDRLRNLASQKAVVIFSKRSCYICHSIQTLFYELGASPAVHELDHEANGREVDRALKSLG 60
           MDRLRNLASQKAVVIFSK SCYICHSIQTLFYELGASPAVHELDH+ANGRE+D AL+ LG
Sbjct: 1   MDRLRNLASQKAVVIFSKSSCYICHSIQTLFYELGASPAVHELDHDANGREIDWALRGLG 60

Query: 61  CNPSVPAVFIGGKFIGSAKDVISLHVNGDLKQMLIDAKAIWL 103
           CNPSVPAVFIGGKFIGSAKDVISLHVNGDLKQMLIDAKAIWL
Sbjct: 61  CNPSVPAVFIGGKFIGSAKDVISLHVNGDLKQMLIDAKAIWL 102

[Close]

BLAST of CmoCh08G003890 vs. NCBI nr
Match: XP_038876720.1 (glutaredoxin-C11 [Benincasa hispida])

HSP 1 Score: 198.4 bits (503), Expect = 3.1e-47
Identity = 95/102 (93.14%), Postives = 99/102 (97.06%), Query Frame = 0


Query: 1   MDRLRNLASQKAVVIFSKRSCYICHSIQTLFYELGASPAVHELDHEANGREVDRALKSLG 60
           MDRLRNLASQKAVVIFSK SCYICHSIQTLFYELGASPA+HELDH+ANGRE+D AL+ LG
Sbjct: 1   MDRLRNLASQKAVVIFSKSSCYICHSIQTLFYELGASPAIHELDHDANGREIDWALRGLG 60

Query: 61  CNPSVPAVFIGGKFIGSAKDVISLHVNGDLKQMLIDAKAIWL 103
           CNPSVPAVFIGGKFIGSAKDVISLHVNGDLKQMLIDAKAIWL
Sbjct: 61  CNPSVPAVFIGGKFIGSAKDVISLHVNGDLKQMLIDAKAIWL 102

[Close]

BLAST of CmoCh08G003890 vs. TAIR 10
Match: AT3G62950.1 (Thioredoxin superfamily protein )

HSP 1 Score: 154.8 bits (390), Expect = 3.6e-38
Identity = 72/103 (69.90%), Postives = 92/103 (89.32%), Query Frame = 0


Query: 1   MDRLRNLASQKAVVIFSKRSCYICHSIQTLFYELGASPAVHELDHEANGREVDRALKSLG 60
           M+R+R+L+S+KA VIF+K SC +CHSI+TLFYELGASPA+HELD +  GRE++RAL++LG
Sbjct: 1   MERIRDLSSKKAAVIFTKSSCCMCHSIKTLFYELGASPAIHELDKDPEGREMERALRALG 60

Query: 61  -CNPSVPAVFIGGKFIGSAKDVISLHVNGDLKQMLIDAKAIWL 103
             NP+VPAVF+GG++IGSAKD+IS HV+G LKQML DAKAIWL
Sbjct: 61  SSNPAVPAVFVGGRYIGSAKDIISFHVDGSLKQMLKDAKAIWL 103

[Close]

BLAST of CmoCh08G003890 vs. TAIR 10
Match: AT2G47870.1 (Thioredoxin superfamily protein )

HSP 1 Score: 143.3 bits (360), Expect = 1.1e-34
Identity = 67/103 (65.05%), Postives = 87/103 (84.47%), Query Frame = 0


Query: 1   MDRLRNLASQKAVVIFSKRSCYICHSIQTLFYELGASPAVHELDHEANGREVDRAL-KSL 60
           M+R+R+LAS+KA VIF+K SC +CHSI+TLFYELGASPA+HELD +  G +++RAL +  
Sbjct: 1   MERVRDLASEKAAVIFTKSSCCMCHSIKTLFYELGASPAIHELDKDPQGPDMERALFRVF 60

Query: 61  GCNPSVPAVFIGGKFIGSAKDVISLHVNGDLKQMLIDAKAIWL 103
           G NP+VPAVF+GG+++GSAKDVIS HV+G LKQML  + AIWL
Sbjct: 61  GSNPAVPAVFVGGRYVGSAKDVISFHVDGSLKQMLKASNAIWL 103

[Close]

BLAST of CmoCh08G003890 vs. TAIR 10
Match: AT3G21460.1 (Glutaredoxin family protein )

HSP 1 Score: 124.0 bits (310), Expect = 6.8e-29
Identity = 56/102 (54.90%), Postives = 80/102 (78.43%), Query Frame = 0


Query: 1   MDRLRNLASQKAVVIFSKRSCYICHSIQTLFYELGASPAVHELDHEANGREVDRALKSLG 60
           MD +  LASQ+AVVIFSK +C + H+I+ LFYE G SPA+ E+D +  G++++ AL  LG
Sbjct: 1   MDVVARLASQRAVVIFSKSTCCMSHAIKRLFYEQGVSPAIVEIDQDMYGKDIEWALARLG 60

Query: 61  CNPSVPAVFIGGKFIGSAKDVISLHVNGDLKQMLIDAKAIWL 103
           C+P+VPAVF+GGKF+G+A  V++LH+NG LK +L +A A+WL
Sbjct: 61  CSPTVPAVFVGGKFVGTANTVMTLHLNGSLKILLKEAGALWL 102

[Close]

BLAST of CmoCh08G003890 vs. TAIR 10
Match: AT4G15700.1 (Thioredoxin superfamily protein )

HSP 1 Score: 116.7 bits (291), Expect = 1.1e-26
Identity = 52/102 (50.98%), Postives = 75/102 (73.53%), Query Frame = 0


Query: 1   MDRLRNLASQKAVVIFSKRSCYICHSIQTLFYELGASPAVHELDHEANGREVDRALKSLG 60
           M+ L+ + S+K+VVIFSK SC + H+I+TLF +LG +P ++ELD  + G+E++ AL  LG
Sbjct: 1   MENLQKMISEKSVVIFSKNSCCMSHTIKTLFLDLGVNPTIYELDEISRGKEIEHALAQLG 60

Query: 61  CNPSVPAVFIGGKFIGSAKDVISLHVNGDLKQMLIDAKAIWL 103
           C+P+VP VFIGG+ +G A  V+SLH+N  L  ML  A A+WL
Sbjct: 61  CSPTVPVVFIGGQLVGGANQVMSLHLNRSLVPMLKRAGALWL 102

[Close]

BLAST of CmoCh08G003890 vs. TAIR 10
Match: AT4G15680.1 (Thioredoxin superfamily protein )

HSP 1 Score: 115.2 bits (287), Expect = 3.2e-26
Identity = 51/102 (50.00%), Postives = 74/102 (72.55%), Query Frame = 0


Query: 1   MDRLRNLASQKAVVIFSKRSCYICHSIQTLFYELGASPAVHELDHEANGREVDRALKSLG 60
           MD+L+ + S+K+VVIFSK SC + H+I+TLF + G +P ++ELD    G+E+++AL  LG
Sbjct: 1   MDKLQKMISEKSVVIFSKNSCCMSHTIKTLFIDFGVNPTIYELDEINRGKEIEQALAQLG 60

Query: 61  CNPSVPAVFIGGKFIGSAKDVISLHVNGDLKQMLIDAKAIWL 103
           C+P+VP VFIGG+ +G A  V+SLH+N  L  ML    A+WL
Sbjct: 61  CSPTVPVVFIGGQLVGGANQVMSLHLNRSLVPMLKRVGALWL 102

The following BLAST results are available for this feature:

BLAST of CmoCh08G003890 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LYC6	5.1e-37	69.90	Glutaredoxin-C11 OS=Arabidopsis thaliana OX=3702 GN=GRXC11 PE=3 SV=1	[more]
O82254	1.5e-33	65.05	Putative glutaredoxin-C12 OS=Arabidopsis thaliana OX=3702 GN=GRXC12 PE=3 SV=1	[more]
Q9LIF1	9.6e-28	54.90	Monothiol glutaredoxin-S10 OS=Arabidopsis thaliana OX=3702 GN=GRXS10 PE=3 SV=1	[more]
O23421	1.5e-25	50.98	Monothiol glutaredoxin-S3 OS=Arabidopsis thaliana OX=3702 GN=GRXS3 PE=3 SV=1	[more]
O23419	4.5e-25	50.00	Monothiol glutaredoxin-S4 OS=Arabidopsis thaliana OX=3702 GN=GRXS4 PE=3 SV=1	[more]

BLAST of CmoCh08G003890 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1H8P8	1.4e-50	100.00	glutaredoxin-C11 OS=Cucurbita moschata OX=3662 GN=LOC111461114 PE=3 SV=1	[more]
A0A6J1L0C7	4.2e-50	98.04	glutaredoxin-C11-like OS=Cucurbita maxima OX=3661 GN=LOC111497924 PE=3 SV=1	[more]
A0A6J1JXM7	6.7e-48	94.12	glutaredoxin-C11-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111488793 PE=...	[more]
A0A6J1GPY2	6.7e-48	94.12	glutaredoxin-C11-like OS=Cucurbita moschata OX=3662 GN=LOC111456468 PE=3 SV=1	[more]
A0A5A7VIX0	1.1e-47	94.12	Glutaredoxin-C11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold41...	[more]

BLAST of CmoCh08G003890 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022960368.1	3.0e-50	100.00	glutaredoxin-C11 [Cucurbita moschata] >XP_023514730.1 glutaredoxin-C11-like [Cuc...	[more]
XP_023004708.1	8.6e-50	98.04	glutaredoxin-C11-like [Cucurbita maxima]	[more]
XP_022954101.1	1.4e-47	94.12	glutaredoxin-C11-like [Cucurbita moschata] >XP_022992474.1 glutaredoxin-C11-like...	[more]
XP_008451630.1	2.3e-47	94.12	PREDICTED: glutaredoxin-C11 [Cucumis melo] >XP_031744239.1 glutaredoxin-C11 [Cuc...	[more]
XP_038876720.1	3.1e-47	93.14	glutaredoxin-C11 [Benincasa hispida]	[more]

BLAST of CmoCh08G003890 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G62950.1	3.6e-38	69.90	Thioredoxin superfamily protein	[more]
AT2G47870.1	1.1e-34	65.05	Thioredoxin superfamily protein	[more]
AT3G21460.1	6.8e-29	54.90	Glutaredoxin family protein	[more]
AT4G15700.1	1.1e-26	50.98	Thioredoxin superfamily protein	[more]
AT4G15680.1	3.2e-26	50.00	Thioredoxin superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR014025	Glutaredoxin subgroup	PRINTS	PR00160	GLUTAREDOXIN	coord: 72..85 score: 31.85 coord: 13..31 score: 33.77 coord: 58..71 score: 34.23
IPR002109	Glutaredoxin	PFAM	PF00462	Glutaredoxin	coord: 13..75 e-value: 5.4E-11 score: 42.5
None	No IPR available	GENE3D	3.40.30.10	Glutaredoxin	coord: 1..100 e-value: 1.0E-26 score: 94.8
None	No IPR available	PANTHER	PTHR10168:SF202	GLUTAREDOXIN-C1 PROTEIN	coord: 1..101
None	No IPR available	PROSITE	PS51354	GLUTAREDOXIN_2	coord: 1..101 score: 20.290497
None	No IPR available	CDD	cd03419	GRX_GRXh_1_2_like	coord: 12..93 e-value: 2.22807E-34 score: 111.478
IPR011905	Glutaredoxin-like, plant II	TIGRFAM	TIGR02189	TIGR02189	coord: 5..102 e-value: 3.0E-39 score: 131.0
IPR011905	Glutaredoxin-like, plant II	PANTHER	PTHR10168	GLUTAREDOXIN	coord: 1..101
IPR036249	Thioredoxin-like superfamily	SUPERFAMILY	52833	Thioredoxin-like	coord: 1..101

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh08G003890.1	CmoCh08G003890.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0097573	glutathione oxidoreductase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity