CmoCh08G003710 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh08G003710
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Histone H2A
Location	Cmo_Chr08: 2324167 .. 2324732 (-)
RNA-Seq Expression	CmoCh08G003710
Synteny	CmoCh08G003710

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTTCGTCCAAATTAGTCTCTCCTCAATTTCGTTACGGTAAAGTAAATATGAGTTCCACCGATGTTCCGGCGAAGGGTGGCAGAGGCAAGAAATCTGCCGCCAAGTCCGTCACTAGGTCTCACAAGGCCGGTCTCCAATTCCCCGTCGGTCGTATCGCCAGGTACCTCAAGAAGGGCCGTTTTGCTCAGCGTGTCGGCTCCGGCTCACCGGTTTACCTCTCCGCCGTTCTCGAATACCTCGCTGCCGAGGTTTGTGAATTGCAATCGTTAATTTTACTTCCGAGTTCAATTTTCTCAGTTCTCAGTGTTCTGATTGTGGATTTTTGTTTTTCGTTTAGGTTTTGGAGTTGGCTGGCAATGCTGCGAGGGACAACAAGAAAACTAGAATCGTCCCGAGGCATATTCAACTAGCAGTGAGGAACGACGAGGAATTGAGCAAGCTTTTGGGATCAGTCACGATCGCCAGCGGAGGAGTGCTGCCGAAGATTCATCAGTCTCTTTTACCGAAGAAGGCCGGTAGTACGAAGGATAAGGCCGAGATCGGATCGGCGTCTCAGGAATTTTAG

mRNA sequence

TTTTCGTCCAAATTAGTCTCTCCTCAATTTCGTTACGGTAAAGTAAATATGAGTTCCACCGATGTTCCGGCGAAGGGTGGCAGAGGCAAGAAATCTGCCGCCAAGTCCGTCACTAGGTCTCACAAGGCCGGTCTCCAATTCCCCGTCGGTCGTATCGCCAGGTACCTCAAGAAGGGCCGTTTTGCTCAGCGTGTCGGCTCCGGCTCACCGGTTTACCTCTCCGCCGTTCTCGAATACCTCGCTGCCGAGGTTTTGGAGTTGGCTGGCAATGCTGCGAGGGACAACAAGAAAACTAGAATCGTCCCGAGGCATATTCAACTAGCAGTGAGGAACGACGAGGAATTGAGCAAGCTTTTGGGATCAGTCACGATCGCCAGCGGAGGAGTGCTGCCGAAGATTCATCAGTCTCTTTTACCGAAGAAGGCCGGTAGTACGAAGGATAAGGCCGAGATCGGATCGGCGTCTCAGGAATTTTAG

Coding sequence (CDS)

ATGAGTTCCACCGATGTTCCGGCGAAGGGTGGCAGAGGCAAGAAATCTGCCGCCAAGTCCGTCACTAGGTCTCACAAGGCCGGTCTCCAATTCCCCGTCGGTCGTATCGCCAGGTACCTCAAGAAGGGCCGTTTTGCTCAGCGTGTCGGCTCCGGCTCACCGGTTTACCTCTCCGCCGTTCTCGAATACCTCGCTGCCGAGGTTTTGGAGTTGGCTGGCAATGCTGCGAGGGACAACAAGAAAACTAGAATCGTCCCGAGGCATATTCAACTAGCAGTGAGGAACGACGAGGAATTGAGCAAGCTTTTGGGATCAGTCACGATCGCCAGCGGAGGAGTGCTGCCGAAGATTCATCAGTCTCTTTTACCGAAGAAGGCCGGTAGTACGAAGGATAAGGCCGAGATCGGATCGGCGTCTCAGGAATTTTAG

Protein sequence

MSSTDVPAKGGRGKKSAAKSVTRSHKAGLQFPVGRIARYLKKGRFAQRVGSGSPVYLSAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIASGGVLPKIHQSLLPKKAGSTKDKAEIGSASQEF

Homology

[Close]

BLAST of CmoCh08G003710 vs. ExPASy Swiss-Prot
Match: P35063 (Histone H2AX OS=Picea abies OX=3329 PE=2 SV=1)

HSP 1 Score: 215.3 bits (547), Expect = 4.4e-55
Identity = 112/135 (82.96%), Postives = 124/135 (91.85%), Query Frame = 0


Query: 8   AKGGRGKKSAAKSVTRSHKAGLQFPVGRIARYLKKGRFAQRVGSGSPVYLSAVLEYLAAE 67
           AKGGRGK  + KSV+RS KAGLQFPVGRIAR+LK G++A+RVG+G+PVYL+AVLEYLAAE
Sbjct: 6   AKGGRGKAKSTKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAE 65

Query: 68  VLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIASGGVLPKIHQSLLPKKAG 127
           VLELAGNAARDNKK RIVPRHIQLAVRNDEELSKLLG+VTIA+GGVLP IHQ LLPKK+G
Sbjct: 66  VLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGAVTIANGGVLPNIHQVLLPKKSG 125

Query: 128 STKDKAEIGSASQEF 143
             KDK EIGSASQEF
Sbjct: 126 --KDKGEIGSASQEF 138

[Close]

BLAST of CmoCh08G003710 vs. ExPASy Swiss-Prot
Match: O04848 (Probable histone H2AXa OS=Arabidopsis thaliana OX=3702 GN=At1g08880 PE=1 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 5.8e-55
Identity = 112/134 (83.58%), Postives = 123/134 (91.79%), Query Frame = 0


Query: 9   KGGRGKKSAAKSVTRSHKAGLQFPVGRIARYLKKGRFAQRVGSGSPVYLSAVLEYLAAEV 68
           KGGRGK  A KSV+RS KAGLQFPVGRIAR+LK G++A+RVG+G+PVYLSAVLEYLAAEV
Sbjct: 11  KGGRGKPKATKSVSRSSKAGLQFPVGRIARFLKSGKYAERVGAGAPVYLSAVLEYLAAEV 70

Query: 69  LELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIASGGVLPKIHQSLLPKKAGS 128
           LELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIA+GGVLP IHQ+LLP K G 
Sbjct: 71  LELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPSKVG- 130

Query: 129 TKDKAEIGSASQEF 143
            K+K +IGSASQEF
Sbjct: 131 -KNKGDIGSASQEF 142

[Close]

BLAST of CmoCh08G003710 vs. ExPASy Swiss-Prot
Match: A2ZL69 (Probable histone H2AXb OS=Oryza sativa subsp. indica OX=39946 GN=OsI_037312 PE=3 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 5.8e-55
Identity = 111/133 (83.46%), Postives = 123/133 (92.48%), Query Frame = 0


Query: 10  GGRGKKSAAKSVTRSHKAGLQFPVGRIARYLKKGRFAQRVGSGSPVYLSAVLEYLAAEVL 69
           GGRGK   +KSV+RS KAGLQFPVGRIARYLK G++A+RVG+G+PVYLSAVLEYLAAEVL
Sbjct: 8   GGRGKSKGSKSVSRSSKAGLQFPVGRIARYLKAGKYAERVGAGAPVYLSAVLEYLAAEVL 67

Query: 70  ELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIASGGVLPKIHQSLLPKKAGST 129
           ELAGNAARDNKK RIVPRHIQLAVRNDEELS+LLG+VTIA+GGVLP IHQ+LLPKK G  
Sbjct: 68  ELAGNAARDNKKNRIVPRHIQLAVRNDEELSRLLGAVTIAAGGVLPNIHQTLLPKKGG-- 127

Query: 130 KDKAEIGSASQEF 143
           KDKA+IGSASQEF
Sbjct: 128 KDKADIGSASQEF 138

[Close]

BLAST of CmoCh08G003710 vs. ExPASy Swiss-Prot
Match: Q2QPG9 (Probable histone H2AXb OS=Oryza sativa subsp. japonica OX=39947 GN=Os12g0530000 PE=2 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 5.8e-55
Identity = 111/133 (83.46%), Postives = 123/133 (92.48%), Query Frame = 0


Query: 10  GGRGKKSAAKSVTRSHKAGLQFPVGRIARYLKKGRFAQRVGSGSPVYLSAVLEYLAAEVL 69
           GGRGK   +KSV+RS KAGLQFPVGRIARYLK G++A+RVG+G+PVYLSAVLEYLAAEVL
Sbjct: 8   GGRGKSKGSKSVSRSSKAGLQFPVGRIARYLKAGKYAERVGAGAPVYLSAVLEYLAAEVL 67

Query: 70  ELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIASGGVLPKIHQSLLPKKAGST 129
           ELAGNAARDNKK RIVPRHIQLAVRNDEELS+LLG+VTIA+GGVLP IHQ+LLPKK G  
Sbjct: 68  ELAGNAARDNKKNRIVPRHIQLAVRNDEELSRLLGAVTIAAGGVLPNIHQTLLPKKGG-- 127

Query: 130 KDKAEIGSASQEF 143
           KDKA+IGSASQEF
Sbjct: 128 KDKADIGSASQEF 138

[Close]

BLAST of CmoCh08G003710 vs. ExPASy Swiss-Prot
Match: O65759 (Histone H2AX OS=Cicer arietinum OX=3827 GN=HIS2A PE=2 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 5.8e-55
Identity = 116/142 (81.69%), Postives = 126/142 (88.73%), Query Frame = 0


Query: 1   MSSTDVPAKGGRGKKSAAKSVTRSHKAGLQFPVGRIARYLKKGRFAQRVGSGSPVYLSAV 60
           MSST    KGGRGK  A+KSV+RS KAGLQFPVGRIAR+LK G++A+RVG+G+PVYLSAV
Sbjct: 1   MSST-ATTKGGRGKPKASKSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV 60

Query: 61  LEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIASGGVLPKIHQS 120
           LEYLAAEVLELAGNAARDNK  RIVPRHIQLAVRNDEELSKLLGSVTIA+GGVLP IHQ+
Sbjct: 61  LEYLAAEVLELAGNAARDNKNNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT 120

Query: 121 LLPKKAGSTKDKAEIGSASQEF 143
           LLPKK G  K K EIGSASQEF
Sbjct: 121 LLPKKVG--KGKGEIGSASQEF 139

[Close]

BLAST of CmoCh08G003710 vs. ExPASy TrEMBL
Match: A0A6J1HB52 (Histone H2A OS=Cucurbita moschata OX=3662 GN=LOC111461202 PE=3 SV=1)

HSP 1 Score: 270.0 bits (689), Expect = 5.6e-69
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 0


Query: 1   MSSTDVPAKGGRGKKSAAKSVTRSHKAGLQFPVGRIARYLKKGRFAQRVGSGSPVYLSAV 60
           MSSTDVPAKGGRGKKSAAKSVTRSHKAGLQFPVGRIARYLKKGRFAQRVGSGSPVYLSAV
Sbjct: 1   MSSTDVPAKGGRGKKSAAKSVTRSHKAGLQFPVGRIARYLKKGRFAQRVGSGSPVYLSAV 60

Query: 61  LEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIASGGVLPKIHQS 120
           LEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIASGGVLPKIHQS
Sbjct: 61  LEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIASGGVLPKIHQS 120

Query: 121 LLPKKAGSTKDKAEIGSASQEF 143
           LLPKKAGSTKDKAEIGSASQEF
Sbjct: 121 LLPKKAGSTKDKAEIGSASQEF 142

[Close]

BLAST of CmoCh08G003710 vs. ExPASy TrEMBL
Match: A0A6J1L0A1 (Histone H2A OS=Cucurbita maxima OX=3661 GN=LOC111497905 PE=3 SV=1)

HSP 1 Score: 265.0 bits (676), Expect = 1.8e-67
Identity = 139/142 (97.89%), Postives = 140/142 (98.59%), Query Frame = 0


Query: 1   MSSTDVPAKGGRGKKSAAKSVTRSHKAGLQFPVGRIARYLKKGRFAQRVGSGSPVYLSAV 60
           MSSTDVPAK GRGKKSA KSVTRSHKAGLQFPVGRIARYLKKGR+AQRVGSGSPVYLSAV
Sbjct: 1   MSSTDVPAKAGRGKKSATKSVTRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAV 60

Query: 61  LEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIASGGVLPKIHQS 120
           LEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIASGGVLPKIHQS
Sbjct: 61  LEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIASGGVLPKIHQS 120

Query: 121 LLPKKAGSTKDKAEIGSASQEF 143
           LLPKKAGSTKDKAEIGSASQEF
Sbjct: 121 LLPKKAGSTKDKAEIGSASQEF 142

[Close]

BLAST of CmoCh08G003710 vs. ExPASy TrEMBL
Match: A0A6J1GNM4 (Histone H2A OS=Cucurbita moschata OX=3662 GN=LOC111456076 PE=3 SV=1)

HSP 1 Score: 255.4 bits (651), Expect = 1.4e-64
Identity = 132/142 (92.96%), Postives = 137/142 (96.48%), Query Frame = 0


Query: 1   MSSTDVPAKGGRGKKSAAKSVTRSHKAGLQFPVGRIARYLKKGRFAQRVGSGSPVYLSAV 60
           MSS DVP KGGRGKKS AKSV+RSHKAGLQFPVGRIARYLKKGR+AQRVGSGSPVYLSAV
Sbjct: 11  MSSNDVPTKGGRGKKSDAKSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAV 70

Query: 61  LEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIASGGVLPKIHQS 120
           LEYLAAEVLELAGNAARDNKK RI+PRHIQLAVRNDEELSKLLGSVTIASGGV+PKIHQS
Sbjct: 71  LEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQS 130

Query: 121 LLPKKAGSTKDKAEIGSASQEF 143
           LLPKKAG+ KDKAEIGSASQEF
Sbjct: 131 LLPKKAGNAKDKAEIGSASQEF 152

[Close]

BLAST of CmoCh08G003710 vs. ExPASy TrEMBL
Match: A0A6J1DA92 (Histone H2A OS=Momordica charantia OX=3673 GN=LOC111018467 PE=3 SV=1)

HSP 1 Score: 252.3 bits (643), Expect = 1.2e-63
Identity = 130/142 (91.55%), Postives = 139/142 (97.89%), Query Frame = 0


Query: 1   MSSTDVPAKGGRGKKSAAKSVTRSHKAGLQFPVGRIARYLKKGRFAQRVGSGSPVYLSAV 60
           MSSTD PAKGGRGKKS++KSV+RS+KAGLQFPVGRIARYLKKGR+AQRVGSGSPVYLSAV
Sbjct: 1   MSSTDAPAKGGRGKKSSSKSVSRSYKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAV 60

Query: 61  LEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIASGGVLPKIHQS 120
           LEYLAAEVLELAGNAARDNKKTRI+PRHIQLAVRNDEELSKLLGSVTIASGGV+PKIHQS
Sbjct: 61  LEYLAAEVLELAGNAARDNKKTRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQS 120

Query: 121 LLPKKAGSTKDKAEIGSASQEF 143
           LLPKKA + K+KAEIGSASQEF
Sbjct: 121 LLPKKAAAGKEKAEIGSASQEF 142

[Close]

BLAST of CmoCh08G003710 vs. ExPASy TrEMBL
Match: A0A0A0K525 (Histone H2A OS=Cucumis sativus OX=3659 GN=Csa_7G390240 PE=3 SV=1)

HSP 1 Score: 251.1 bits (640), Expect = 2.7e-63
Identity = 129/142 (90.85%), Postives = 137/142 (96.48%), Query Frame = 0


Query: 1   MSSTDVPAKGGRGKKSAAKSVTRSHKAGLQFPVGRIARYLKKGRFAQRVGSGSPVYLSAV 60
           MSST+V  KGGRGKK++ KSV+RSHKAGLQFPVGRIARYLKKGR+AQRVGSGSPVYLSAV
Sbjct: 1   MSSTEVSTKGGRGKKASTKSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAV 60

Query: 61  LEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIASGGVLPKIHQS 120
           LEYLAAEVLELAGNAARDNKK RI+PRHIQLAVRNDEELSKLLGSVTIASGGV+PKIHQS
Sbjct: 61  LEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQS 120

Query: 121 LLPKKAGSTKDKAEIGSASQEF 143
           LLPKKAG+ KDKAEIGSASQEF
Sbjct: 121 LLPKKAGNAKDKAEIGSASQEF 142

[Close]

BLAST of CmoCh08G003710 vs. NCBI nr
Match: XP_022960479.1 (histone H2AX-like [Cucurbita moschata])

HSP 1 Score: 270.0 bits (689), Expect = 1.2e-68
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 0


Query: 1   MSSTDVPAKGGRGKKSAAKSVTRSHKAGLQFPVGRIARYLKKGRFAQRVGSGSPVYLSAV 60
           MSSTDVPAKGGRGKKSAAKSVTRSHKAGLQFPVGRIARYLKKGRFAQRVGSGSPVYLSAV
Sbjct: 1   MSSTDVPAKGGRGKKSAAKSVTRSHKAGLQFPVGRIARYLKKGRFAQRVGSGSPVYLSAV 60

Query: 61  LEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIASGGVLPKIHQS 120
           LEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIASGGVLPKIHQS
Sbjct: 61  LEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIASGGVLPKIHQS 120

Query: 121 LLPKKAGSTKDKAEIGSASQEF 143
           LLPKKAGSTKDKAEIGSASQEF
Sbjct: 121 LLPKKAGSTKDKAEIGSASQEF 142

[Close]

BLAST of CmoCh08G003710 vs. NCBI nr
Match: KAG7025548.1 (hypothetical protein SDJN02_12044 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 267.3 bits (682), Expect = 7.5e-68
Identity = 140/142 (98.59%), Postives = 141/142 (99.30%), Query Frame = 0


Query: 1   MSSTDVPAKGGRGKKSAAKSVTRSHKAGLQFPVGRIARYLKKGRFAQRVGSGSPVYLSAV 60
           MSSTDVPAKGGRGKKSA KSVTRSHKAGLQFPVGRIARYLKKGR+AQRVGSGSPVYLSAV
Sbjct: 1   MSSTDVPAKGGRGKKSAVKSVTRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAV 60

Query: 61  LEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIASGGVLPKIHQS 120
           LEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIASGGVLPKIHQS
Sbjct: 61  LEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIASGGVLPKIHQS 120

Query: 121 LLPKKAGSTKDKAEIGSASQEF 143
           LLPKKAGSTKDKAEIGSASQEF
Sbjct: 121 LLPKKAGSTKDKAEIGSASQEF 142

[Close]

BLAST of CmoCh08G003710 vs. NCBI nr
Match: XP_023004683.1 (histone H2AX-like [Cucurbita maxima])

HSP 1 Score: 265.0 bits (676), Expect = 3.7e-67
Identity = 139/142 (97.89%), Postives = 140/142 (98.59%), Query Frame = 0


Query: 1   MSSTDVPAKGGRGKKSAAKSVTRSHKAGLQFPVGRIARYLKKGRFAQRVGSGSPVYLSAV 60
           MSSTDVPAK GRGKKSA KSVTRSHKAGLQFPVGRIARYLKKGR+AQRVGSGSPVYLSAV
Sbjct: 1   MSSTDVPAKAGRGKKSATKSVTRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAV 60

Query: 61  LEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIASGGVLPKIHQS 120
           LEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIASGGVLPKIHQS
Sbjct: 61  LEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIASGGVLPKIHQS 120

Query: 121 LLPKKAGSTKDKAEIGSASQEF 143
           LLPKKAGSTKDKAEIGSASQEF
Sbjct: 121 LLPKKAGSTKDKAEIGSASQEF 142

[Close]

BLAST of CmoCh08G003710 vs. NCBI nr
Match: KAG6575875.1 (Histone H2AX, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 257.7 bits (657), Expect = 5.9e-65
Identity = 133/142 (93.66%), Postives = 139/142 (97.89%), Query Frame = 0


Query: 1   MSSTDVPAKGGRGKKSAAKSVTRSHKAGLQFPVGRIARYLKKGRFAQRVGSGSPVYLSAV 60
           MSSTDVP KGGRGKKSAAKSV+RSHKAGLQFPVGRIARYLKKGR+AQRVGSGSPVYLSAV
Sbjct: 1   MSSTDVPTKGGRGKKSAAKSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAV 60

Query: 61  LEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIASGGVLPKIHQS 120
           LEYLAAEVLELAGNAARDNKK RI+PRHIQLAVRNDEELSKLLGSVTIASGGV+PKIHQS
Sbjct: 61  LEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQS 120

Query: 121 LLPKKAGSTKDKAEIGSASQEF 143
           LLPKKAG+ K+KAEIGSASQEF
Sbjct: 121 LLPKKAGNAKNKAEIGSASQEF 142

[Close]

BLAST of CmoCh08G003710 vs. NCBI nr
Match: XP_023548483.1 (histone H2AX-like [Cucurbita pepo subsp. pepo] >XP_023548484.1 histone H2AX-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 256.9 bits (655), Expect = 1.0e-64
Identity = 132/142 (92.96%), Postives = 138/142 (97.18%), Query Frame = 0


Query: 1   MSSTDVPAKGGRGKKSAAKSVTRSHKAGLQFPVGRIARYLKKGRFAQRVGSGSPVYLSAV 60
           MSSTDVP KGGRGKKSAAK+V+RSHKAGLQFPVGRIARYLKKGR+AQRVGSGSPVYLSAV
Sbjct: 1   MSSTDVPTKGGRGKKSAAKAVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAV 60

Query: 61  LEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIASGGVLPKIHQS 120
           LEYL AEVLELAGNAARDNKK RI+PRHIQLAVRNDEELSKLLGSVTIASGGV+PKIHQS
Sbjct: 61  LEYLVAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQS 120

Query: 121 LLPKKAGSTKDKAEIGSASQEF 143
           LLPKKAG+ KDKAEIGSASQEF
Sbjct: 121 LLPKKAGNAKDKAEIGSASQEF 142

[Close]

BLAST of CmoCh08G003710 vs. TAIR 10
Match: AT1G08880.1 (Histone superfamily protein )

HSP 1 Score: 214.9 bits (546), Expect = 4.1e-56
Identity = 112/134 (83.58%), Postives = 123/134 (91.79%), Query Frame = 0


Query: 9   KGGRGKKSAAKSVTRSHKAGLQFPVGRIARYLKKGRFAQRVGSGSPVYLSAVLEYLAAEV 68
           KGGRGK  A KSV+RS KAGLQFPVGRIAR+LK G++A+RVG+G+PVYLSAVLEYLAAEV
Sbjct: 11  KGGRGKPKATKSVSRSSKAGLQFPVGRIARFLKSGKYAERVGAGAPVYLSAVLEYLAAEV 70

Query: 69  LELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIASGGVLPKIHQSLLPKKAGS 128
           LELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIA+GGVLP IHQ+LLP K G 
Sbjct: 71  LELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPSKVG- 130

Query: 129 TKDKAEIGSASQEF 143
            K+K +IGSASQEF
Sbjct: 131 -KNKGDIGSASQEF 142

[Close]

BLAST of CmoCh08G003710 vs. TAIR 10
Match: AT1G54690.1 (gamma histone variant H2AX )

HSP 1 Score: 214.5 bits (545), Expect = 5.4e-56
Identity = 112/134 (83.58%), Postives = 123/134 (91.79%), Query Frame = 0


Query: 9   KGGRGKKSAAKSVTRSHKAGLQFPVGRIARYLKKGRFAQRVGSGSPVYLSAVLEYLAAEV 68
           KGGRGK  A KSV+RS KAGLQFPVGRIAR+LK G++A+RVG+G+PVYLSAVLEYLAAEV
Sbjct: 11  KGGRGKPKATKSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEV 70

Query: 69  LELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIASGGVLPKIHQSLLPKKAGS 128
           LELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIA+GGVLP IHQ+LLP K G 
Sbjct: 71  LELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPSKVG- 130

Query: 129 TKDKAEIGSASQEF 143
            K+K +IGSASQEF
Sbjct: 131 -KNKGDIGSASQEF 142

[Close]

BLAST of CmoCh08G003710 vs. TAIR 10
Match: AT1G51060.1 (histone H2A 10 )

HSP 1 Score: 194.1 bits (492), Expect = 7.5e-50
Identity = 101/128 (78.91%), Postives = 113/128 (88.28%), Query Frame = 0


Query: 11  GRGKK----SAAKSVTRSHKAGLQFPVGRIARYLKKGRFAQRVGSGSPVYLSAVLEYLAA 70
           GRGK     SA K+ TRS KAGLQFPVGRIAR+LKKG++A+RVG+G+PVYL+AVLEYLAA
Sbjct: 3   GRGKTLGSGSAKKATTRSSKAGLQFPVGRIARFLKKGKYAERVGAGAPVYLAAVLEYLAA 62

Query: 71  EVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIASGGVLPKIHQSLLPKKA 130
           EVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLG VTIA+GGV+P IH  LLPKK 
Sbjct: 63  EVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKT 122

Query: 131 GSTKDKAE 135
           G++K  AE
Sbjct: 123 GASKPSAE 130

[Close]

BLAST of CmoCh08G003710 vs. TAIR 10
Match: AT4G27230.1 (histone H2A 2 )

HSP 1 Score: 191.4 bits (485), Expect = 4.9e-49
Identity = 100/128 (78.12%), Postives = 113/128 (88.28%), Query Frame = 0


Query: 11  GRGKK----SAAKSVTRSHKAGLQFPVGRIARYLKKGRFAQRVGSGSPVYLSAVLEYLAA 70
           GRGK+    +A KS +RS KAGLQFPVGRIAR+LK G++A+RVG+G+PVYL+AVLEYLAA
Sbjct: 3   GRGKQLGSGAAKKSTSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAA 62

Query: 71  EVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIASGGVLPKIHQSLLPKKA 130
           EVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLG VTIA+GGV+P IH  LLPKKA
Sbjct: 63  EVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKA 122

Query: 131 GSTKDKAE 135
           GS+K   E
Sbjct: 123 GSSKPTEE 130

[Close]

BLAST of CmoCh08G003710 vs. TAIR 10
Match: AT4G27230.2 (histone H2A 2 )

HSP 1 Score: 191.4 bits (485), Expect = 4.9e-49
Identity = 100/128 (78.12%), Postives = 113/128 (88.28%), Query Frame = 0


Query: 11  GRGKK----SAAKSVTRSHKAGLQFPVGRIARYLKKGRFAQRVGSGSPVYLSAVLEYLAA 70
           GRGK+    +A KS +RS KAGLQFPVGRIAR+LK G++A+RVG+G+PVYL+AVLEYLAA
Sbjct: 3   GRGKQLGSGAAKKSTSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAA 62

Query: 71  EVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIASGGVLPKIHQSLLPKKA 130
           EVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLG VTIA+GGV+P IH  LLPKKA
Sbjct: 63  EVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKA 122

Query: 131 GSTKDKAE 135
           GS+K   E
Sbjct: 123 GSSKPTEE 130

The following BLAST results are available for this feature:

BLAST of CmoCh08G003710 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P35063	4.4e-55	82.96	Histone H2AX OS=Picea abies OX=3329 PE=2 SV=1	[more]
O04848	5.8e-55	83.58	Probable histone H2AXa OS=Arabidopsis thaliana OX=3702 GN=At1g08880 PE=1 SV=1	[more]
A2ZL69	5.8e-55	83.46	Probable histone H2AXb OS=Oryza sativa subsp. indica OX=39946 GN=OsI_037312 PE=3...	[more]
Q2QPG9	5.8e-55	83.46	Probable histone H2AXb OS=Oryza sativa subsp. japonica OX=39947 GN=Os12g0530000 ...	[more]
O65759	5.8e-55	81.69	Histone H2AX OS=Cicer arietinum OX=3827 GN=HIS2A PE=2 SV=1	[more]

BLAST of CmoCh08G003710 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HB52	5.6e-69	100.00	Histone H2A OS=Cucurbita moschata OX=3662 GN=LOC111461202 PE=3 SV=1	[more]
A0A6J1L0A1	1.8e-67	97.89	Histone H2A OS=Cucurbita maxima OX=3661 GN=LOC111497905 PE=3 SV=1	[more]
A0A6J1GNM4	1.4e-64	92.96	Histone H2A OS=Cucurbita moschata OX=3662 GN=LOC111456076 PE=3 SV=1	[more]
A0A6J1DA92	1.2e-63	91.55	Histone H2A OS=Momordica charantia OX=3673 GN=LOC111018467 PE=3 SV=1	[more]
A0A0A0K525	2.7e-63	90.85	Histone H2A OS=Cucumis sativus OX=3659 GN=Csa_7G390240 PE=3 SV=1	[more]

BLAST of CmoCh08G003710 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022960479.1	1.2e-68	100.00	histone H2AX-like [Cucurbita moschata]	[more]
KAG7025548.1	7.5e-68	98.59	hypothetical protein SDJN02_12044 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_023004683.1	3.7e-67	97.89	histone H2AX-like [Cucurbita maxima]	[more]
KAG6575875.1	5.9e-65	93.66	Histone H2AX, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_023548483.1	1.0e-64	92.96	histone H2AX-like [Cucurbita pepo subsp. pepo] >XP_023548484.1 histone H2AX-like...	[more]

BLAST of CmoCh08G003710 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G08880.1	4.1e-56	83.58	Histone superfamily protein	[more]
AT1G54690.1	5.4e-56	83.58	gamma histone variant H2AX	[more]
AT1G51060.1	7.5e-50	78.91	histone H2A 10	[more]
AT4G27230.1	4.9e-49	78.13	histone H2A 2	[more]
AT4G27230.2	4.9e-49	78.13	histone H2A 2	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002119	Histone H2A	PRINTS	PR00620	HISTONEH2A	coord: 63..76 score: 89.46 coord: 48..63 score: 75.0 coord: 77..91 score: 78.86 coord: 19..41 score: 67.99 coord: 105..123 score: 66.67
IPR002119	Histone H2A	SMART	SM00414	h2a4	coord: 8..128 e-value: 4.1E-75 score: 265.5
IPR002119	Histone H2A	CDD	cd00074	H2A	coord: 13..125 e-value: 6.65946E-67 score: 196.402
IPR007125	Histone H2A/H2B/H3	PFAM	PF00125	Histone	coord: 3..94 e-value: 5.6E-15 score: 55.9
IPR032454	Histone H2A, C-terminal domain	PFAM	PF16211	Histone_H2A_C	coord: 97..130 e-value: 1.1E-17 score: 63.5
IPR009072	Histone-fold	GENE3D	1.10.20.10	Histone, subunit A	coord: 7..135 e-value: 2.8E-62 score: 210.3
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 22..125
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25
None	No IPR available	PANTHER	PTHR23430	HISTONE H2A	coord: 7..140
None	No IPR available	PANTHER	PTHR23430:SF207	HISTONE H2A	coord: 7..140
IPR032458	Histone H2A conserved site	PROSITE	PS00046	HISTONE_H2A	coord: 27..33

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh08G003710.1	CmoCh08G003710.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0031507	heterochromatin assembly
cellular_component	GO:0000786	nucleosome
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046982	protein heterodimerization activity