CmoCh08G003700 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh08G003700
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Histone H2A
Location	Cmo_Chr08: 2321048 .. 2323998 (-)
RNA-Seq Expression	CmoCh08G003700
Synteny	CmoCh08G003700

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTGATGAAGTTCACCACTAATTTGAATAGAAAGGAACCAGTTGAATTTTTATTGTCTCGCATTCTGTAAGTTCTGTTATCAGCTAAACAAGAACTGCAAATTCATTATTGACAGGATTATTTTTAAATGGTATATAAGTTGCGAATTCGTATATTTTCGTGTATATATAAATCTATTATTCTGGAACATTTGTACCTTAATCCTTTGAAATTCAATAGTTCTACTGTTCATCTCTGTGAATTTTCGCATTTCTATTGATCCGATCATCCGCCGGAAAATAACACAATACTTTGTTCATTTTTGTTTTGCTAAGGGCGAACACGGTTTCGTAGTGTCAGAGGGCCGGCCTTTAGTTGCCTGTTGGTGCTAGCGCACCTGTCTACCTCTCCGCTGCCTTTGAATATCCCGCCGCCGAGGTTAGAACTTCATCTTTCATTGTATCTTTTAACTTGTGTTTCCGATATGTTTATCTGGTAGTTGTTGCATTCGTTAGAGTGTTGTAGTGTAGTGTTATGATTGTTGGATGATGGAAGTCCCACATCGACTAATTTAGGGTGTGATCATGAGTTTATAAGTGAGGAATACTAACTCCATTGGTATGAGGCCTTTTGGGGAAGCCCAAAGCAAAGCCATGAGAGCTTATGCTCAAAGTGGACAATATCATACCATTGTGGAGAGTCGTGTTCGTCTAACAATGATCACTTGAATCGGAATTGGCGTCTTCGATTTAGTTTTGTTTCTTCTGCTTTTGCTTTGGATTCGATTGGGAGAAGGATCTTATTTGTTTCTCTTGGTAAATTGGCTGTTGCAGAAATTGTTTATGCGTTGGCCTCACATGAAATGATGTTACTTTACCATAATCGCATTCATAGTAGGAATCTTGAGCTTTGATGTCTGAATTCATTGCAGTTTATTCAGTTTTTCCAGGTGGATTTGTTCATGAAGTTACTAGATTATGTTGATTTCTTCATTGGATTAATGAAGTATTACATGGGTTCATCCCAACATTTTCATGAGATATGATGATGATTTGGTCTTACCTTCCAAGTAGCTTTATATACTTCAAATTTCCATTGGCAGGTGCTTGAGCTTGCAGACAATGCTACCAGAGACAACGAACGGCGAGGAGCTGACCATCTCTTGAGTGATGTGAACATTGCAAATGGAGTGTTGCCGAATATCCATCAAAACCTCTTGCCTAATATGGCGGGATCAGGCAAAAACAACATTGAATCTGCATCACAAGAGTTCTAAAAGTTTCTGATCATCAACAAATTTTGATACACGAGGTACGTAAGAGTGAAAAATGGTTGTGTGGTTTCATTGCCTTGGTTTGAAATCTGTTTAAATTTTATGAACCACACAAGACGGTTCTCTAAGATCCCACGTCGATTGAGAAGGGGAATGAAGCATTCCTTATAAGGGTGTGGAAACCTTTCCTTAGTAGATGGGTTTTAAAATTGTGAGACTGACAGCAATACGTAATGTGTGAAAATGGATAGTATTTGCTAGTGGTGAGCTTGAGCTGTTACAAATGGTACTAGAGCCATACACCAAGTAGTGCACCAGTGAGAACGCTGGCCCTCAGAGGGATGGATTGTGAGATCTCATATCAATTGGGGCAGAGAATGAAACATTCTTTATAAGGGTGTGGAAATCTCCTCTATTAGACGCGTTTTAAAACCGTACGGCTGACAACGATACGTAATAGGCCAAAGCAGACAATATAGGCTAGTAGTAGACTTGAGATTGAAACTACATTGTGTTCTATCCTTGTTGCTTGCCTGCTTGTTTGTCATACACGTTTTGCAATTGGAATATACCATTCCCATTTAAGATATCTGCCTTGGGTTGATTAGGTTGATTGTGCCACTGAATCTACTATTTTCATTACCTTTGCGGCCATTAGATTACAATCAATCTTGAATATGAAAGAACATTCAACTAGAACGGCCCCTAGGAAATGTTTTCTAGAAGCCAAAGCAGCCATTTCAATGGTTTGACAAGAATAGGGCGATAGAACAGATTCTTTTACGTACTTCGTTGAGTCAGTCGTGTCGTGAATCCAGTGGATCTAGCTCATTTGGTGTCGCTACAAACACCATATTGCCCTCACCCACCTCCACCTTCCCTCTCTTCCCTGTCCTGAGGACTAGGCTGTTTCAACTGTAGGAGAATATCCCATTCATCATGTCGATAATGTCGCTTGGCTCGACCACATGAACTGCAGCTATGTCATCAGCCACCAACAATAGACAAGCCTTGTTTTGTCCTTCAACTGTTGTCTTCCCTTCCTCCAAACCTATGAACTTTGCATCCACATTGTTTTGTTCTGCTCGGACCAAGTCCTCGAGAGAGCTCGGAACCCAAGTTGCAAAGTTCTCCTATCAGATCCTATATACTTAGATTTTTCAAATGAATTATTTGGTTCACAATTAATGATGTGAATATTTTCAGATTATTGTTGACAAAGATGTCGTACAATGTCTTTTTTGTTGGGTCATTGTTCAAATGGGATTTATATATATATTTTTTGAAAAAAGCAAAATCGATTGCCAAGTCTCCTTTCTCATACATTGTATGAGCATATAGCTTTTCGTTTGTTTTTTTTTACATTTTTTTTTTTATATTCGATGGTTAATTTTATAATATTTAAACACTAACTAGGTGGGTGGAGGTTCATAGAATATGGATTTATATCATCATTTTACTTTTTTTTTTATATATATAAATTCTAAAAAGAAACTCTTAAATTTCCTCATCGAACCAAGTAAGTCTTGACTCCTTTCCTTTTTTGGTTCAGGGCATGACTTTGATATCATGTTAAGAATCACTGATTTCCAGTATGGTTTTGGGCTTCCCAAAAGATCTTGTACCAACAGAGATAGTATTATTTTATTATAAACTCATGATTATTCTCTAAATTAGTCGATGTGGGACTTTTATCC

mRNA sequence

ATGCTGATGAAGTTCACCACTAATTTGAATAGAAAGGAACCAGTTGAATTTTTATTGTCTCGCATTCTCGCACCTGTCTACCTCTCCGCTGCCTTTGAATATCCCGCCGCCGAGGTGCTTGAGCTTGCAGACAATGCTACCAGAGACAACGAACGGCGAGGAGCTGACCATCTCTTGAGTGATGTGAACATTGCAAATGGAGTGTTGCCGAATATCCATCAAAACCTCTTGCCTAATATGGCGGGATCAGGCAAAAACAACATTGAATCTGCATCACAAGAGTTCTAAAAGTTTCTGATCATCAACAAATTTTGATACACGAGGGCATGACTTTGATATCATGTTAAGAATCACTGATTTCCAGTATGGTTTTGGGCTTCCCAAAAGATCTTGTACCAACAGAGATAGTATTATTTTATTATAAACTCATGATTATTCTCTAAATTAGTCGATGTGGGACTTTTATCC

Coding sequence (CDS)

ATGCTGATGAAGTTCACCACTAATTTGAATAGAAAGGAACCAGTTGAATTTTTATTGTCTCGCATTCTCGCACCTGTCTACCTCTCCGCTGCCTTTGAATATCCCGCCGCCGAGGTGCTTGAGCTTGCAGACAATGCTACCAGAGACAACGAACGGCGAGGAGCTGACCATCTCTTGAGTGATGTGAACATTGCAAATGGAGTGTTGCCGAATATCCATCAAAACCTCTTGCCTAATATGGCGGGATCAGGCAAAAACAACATTGAATCTGCATCACAAGAGTTCTAA

Protein sequence

MLMKFTTNLNRKEPVEFLLSRILAPVYLSAAFEYPAAEVLELADNATRDNERRGADHLLSDVNIANGVLPNIHQNLLPNMAGSGKNNIESASQEF

Homology

[Close]

BLAST of CmoCh08G003700 vs. ExPASy Swiss-Prot
Match: O65759 (Histone H2AX OS=Cicer arietinum OX=3827 GN=HIS2A PE=2 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 9.6e-14
Identity = 49/88 (55.68%), Postives = 50/88 (56.82%), Query Frame = 0


Query: 24  APVYLSAAFEYPAAEVLELADNATRDNER---------------RGADHLLSDVNIAN-G 83
           APVYLSA  EY AAEVLELA NA RDN+                     LL  V IAN G
Sbjct: 52  APVYLSAVLEYLAAEVLELAGNAARDNKNNRIVPRHIQLAVRNDEELSKLLGSVTIANGG 111

Query: 84  VLPNIHQNLLPNMAGSGKNNIESASQEF 96
           VLPNIHQ LLP   G GK  I SASQEF
Sbjct: 112 VLPNIHQTLLPKKVGKGKGEIGSASQEF 139

[Close]

BLAST of CmoCh08G003700 vs. ExPASy Swiss-Prot
Match: O04848 (Probable histone H2AXa OS=Arabidopsis thaliana OX=3702 GN=At1g08880 PE=1 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 1.6e-13
Identity = 48/88 (54.55%), Postives = 52/88 (59.09%), Query Frame = 0


Query: 24  APVYLSAAFEYPAAEVLELADNATRDNER---------------RGADHLLSDVNIAN-G 83
           APVYLSA  EY AAEVLELA NA RDN++                    LL  V IAN G
Sbjct: 55  APVYLSAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIANGG 114

Query: 84  VLPNIHQNLLPNMAGSGKNNIESASQEF 96
           VLPNIHQ LLP+  G  K +I SASQEF
Sbjct: 115 VLPNIHQTLLPSKVGKNKGDIGSASQEF 142

[Close]

BLAST of CmoCh08G003700 vs. ExPASy Swiss-Prot
Match: Q9S9K7 (Probable histone H2AXb OS=Arabidopsis thaliana OX=3702 GN=At1g54690 PE=1 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 1.6e-13
Identity = 48/88 (54.55%), Postives = 52/88 (59.09%), Query Frame = 0


Query: 24  APVYLSAAFEYPAAEVLELADNATRDNER---------------RGADHLLSDVNIAN-G 83
           APVYLSA  EY AAEVLELA NA RDN++                    LL  V IAN G
Sbjct: 55  APVYLSAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIANGG 114

Query: 84  VLPNIHQNLLPNMAGSGKNNIESASQEF 96
           VLPNIHQ LLP+  G  K +I SASQEF
Sbjct: 115 VLPNIHQTLLPSKVGKNKGDIGSASQEF 142

[Close]

BLAST of CmoCh08G003700 vs. ExPASy Swiss-Prot
Match: P35063 (Histone H2AX OS=Picea abies OX=3329 PE=2 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 2.4e-12
Identity = 47/88 (53.41%), Postives = 51/88 (57.95%), Query Frame = 0


Query: 24  APVYLSAAFEYPAAEVLELADNATRDNER---------------RGADHLLSDVNIAN-G 83
           APVYL+A  EY AAEVLELA NA RDN++                    LL  V IAN G
Sbjct: 51  APVYLAAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGAVTIANGG 110

Query: 84  VLPNIHQNLLPNMAGSGKNNIESASQEF 96
           VLPNIHQ LLP  +G  K  I SASQEF
Sbjct: 111 VLPNIHQVLLPKKSGKDKGEIGSASQEF 138

[Close]

BLAST of CmoCh08G003700 vs. ExPASy Swiss-Prot
Match: A2ZL69 (Probable histone H2AXb OS=Oryza sativa subsp. indica OX=39946 GN=OsI_037312 PE=3 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 3.1e-12
Identity = 47/88 (53.41%), Postives = 50/88 (56.82%), Query Frame = 0


Query: 24  APVYLSAAFEYPAAEVLELADNATRDNER---------------RGADHLLSDVNI-ANG 83
           APVYLSA  EY AAEVLELA NA RDN++                    LL  V I A G
Sbjct: 51  APVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSRLLGAVTIAAGG 110

Query: 84  VLPNIHQNLLPNMAGSGKNNIESASQEF 96
           VLPNIHQ LLP   G  K +I SASQEF
Sbjct: 111 VLPNIHQTLLPKKGGKDKADIGSASQEF 138

[Close]

BLAST of CmoCh08G003700 vs. ExPASy TrEMBL
Match: A0A6J1JMN9 (Histone H2A OS=Cucurbita maxima OX=3661 GN=LOC111488262 PE=3 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 7.7e-14
Identity = 53/88 (60.23%), Postives = 56/88 (63.64%), Query Frame = 0


Query: 24  APVYLSAAFEYPAAEVLELADNATRDNER---------------RGADHLLSDVNIAN-G 83
           APVYLSA  EY AAEVLELA NA RDN++                    LL DV IAN G
Sbjct: 52  APVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGG 111

Query: 84  VLPNIHQNLLPNMAGSGKNNIESASQEF 96
           VLPNIHQNLLP  AGSGK +I SASQEF
Sbjct: 112 VLPNIHQNLLPKKAGSGKGDIGSASQEF 139

[Close]

BLAST of CmoCh08G003700 vs. ExPASy TrEMBL
Match: A0A6J1D8Q1 (Histone H2A OS=Momordica charantia OX=3673 GN=LOC111018409 PE=3 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 7.7e-14
Identity = 53/88 (60.23%), Postives = 56/88 (63.64%), Query Frame = 0


Query: 24  APVYLSAAFEYPAAEVLELADNATRDNER---------------RGADHLLSDVNIAN-G 83
           APVYLSA  EY AAEVLELA NA RDN++                    LL DV IAN G
Sbjct: 52  APVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGG 111

Query: 84  VLPNIHQNLLPNMAGSGKNNIESASQEF 96
           VLPNIHQNLLP  AGSGK +I SASQEF
Sbjct: 112 VLPNIHQNLLPKKAGSGKGDIGSASQEF 139

[Close]

BLAST of CmoCh08G003700 vs. ExPASy TrEMBL
Match: A0A6J1GNQ0 (Histone H2A OS=Cucurbita moschata OX=3662 GN=LOC111456077 PE=3 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 7.7e-14
Identity = 53/88 (60.23%), Postives = 56/88 (63.64%), Query Frame = 0


Query: 24  APVYLSAAFEYPAAEVLELADNATRDNER---------------RGADHLLSDVNIAN-G 83
           APVYLSA  EY AAEVLELA NA RDN++                    LL DV IAN G
Sbjct: 52  APVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGG 111

Query: 84  VLPNIHQNLLPNMAGSGKNNIESASQEF 96
           VLPNIHQNLLP  AGSGK +I SASQEF
Sbjct: 112 VLPNIHQNLLPKKAGSGKGDIGSASQEF 139

[Close]

BLAST of CmoCh08G003700 vs. ExPASy TrEMBL
Match: A0A5A7UVH7 (Histone H2A OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411G002130 PE=3 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 3.8e-13
Identity = 52/88 (59.09%), Postives = 55/88 (62.50%), Query Frame = 0


Query: 24  APVYLSAAFEYPAAEVLELADNATRDNER---------------RGADHLLSDVNIAN-G 83
           APVYLSA  EY AAEVLELA NA RDN++                    LL DV IAN G
Sbjct: 52  APVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGG 111

Query: 84  VLPNIHQNLLPNMAGSGKNNIESASQEF 96
           VLPNIHQ LLP  AGSGK +I SASQEF
Sbjct: 112 VLPNIHQTLLPKKAGSGKGDIGSASQEF 139

[Close]

BLAST of CmoCh08G003700 vs. ExPASy TrEMBL
Match: A0A0A0K7H2 (Histone H2A OS=Cucumis sativus OX=3659 GN=Csa_7G390230 PE=3 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 3.8e-13
Identity = 52/88 (59.09%), Postives = 55/88 (62.50%), Query Frame = 0


Query: 24  APVYLSAAFEYPAAEVLELADNATRDNER---------------RGADHLLSDVNIAN-G 83
           APVYLSA  EY AAEVLELA NA RDN++                    LL DV IAN G
Sbjct: 52  APVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGG 111

Query: 84  VLPNIHQNLLPNMAGSGKNNIESASQEF 96
           VLPNIHQ LLP  AGSGK +I SASQEF
Sbjct: 112 VLPNIHQTLLPKKAGSGKGDIGSASQEF 139

[Close]

BLAST of CmoCh08G003700 vs. NCBI nr
Match: KAG6593149.1 (putative histone H2AXa, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 141.0 bits (354), Expect = 5.4e-30
Identity = 71/72 (98.61%), Postives = 71/72 (98.61%), Query Frame = 0


Query: 24  APVYLSAAFEYPAAEVLELADNATRDNERRGADHLLSDVNIANGVLPNIHQNLLPNMAGS 83
           APVYLSAAFEYPAAEVLELADNATRDNERRGAD LLSDVNIANGVLPNIHQNLLPNMAGS
Sbjct: 99  APVYLSAAFEYPAAEVLELADNATRDNERRGADQLLSDVNIANGVLPNIHQNLLPNMAGS 158

Query: 84  GKNNIESASQEF 96
           GKNNIESASQEF
Sbjct: 159 GKNNIESASQEF 170

[Close]

BLAST of CmoCh08G003700 vs. NCBI nr
Match: KAG7014408.1 (Histone H2AX, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 86.3 bits (212), Expect = 1.6e-13
Identity = 53/88 (60.23%), Postives = 56/88 (63.64%), Query Frame = 0


Query: 24  APVYLSAAFEYPAAEVLELADNATRDNER---------------RGADHLLSDVNIAN-G 83
           APVYLSA  EY AAEVLELA NA RDN++                    LL DV IAN G
Sbjct: 111 APVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGG 170

Query: 84  VLPNIHQNLLPNMAGSGKNNIESASQEF 96
           VLPNIHQNLLP  AGSGK +I SASQEF
Sbjct: 171 VLPNIHQNLLPKKAGSGKGDIGSASQEF 198

[Close]

BLAST of CmoCh08G003700 vs. NCBI nr
Match: XP_022953583.1 (histone H2AX [Cucurbita moschata] >XP_022991732.1 histone H2AX [Cucurbita maxima] >XP_023548485.1 histone H2AX [Cucurbita pepo subsp. pepo] >XP_023548486.1 histone H2AX [Cucurbita pepo subsp. pepo] >KAG6575874.1 Histone H2AX, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 86.3 bits (212), Expect = 1.6e-13
Identity = 53/88 (60.23%), Postives = 56/88 (63.64%), Query Frame = 0


Query: 24  APVYLSAAFEYPAAEVLELADNATRDNER---------------RGADHLLSDVNIAN-G 83
           APVYLSA  EY AAEVLELA NA RDN++                    LL DV IAN G
Sbjct: 52  APVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGG 111

Query: 84  VLPNIHQNLLPNMAGSGKNNIESASQEF 96
           VLPNIHQNLLP  AGSGK +I SASQEF
Sbjct: 112 VLPNIHQNLLPKKAGSGKGDIGSASQEF 139

[Close]

BLAST of CmoCh08G003700 vs. NCBI nr
Match: XP_022150163.1 (histone H2AX [Momordica charantia])

HSP 1 Score: 86.3 bits (212), Expect = 1.6e-13
Identity = 53/88 (60.23%), Postives = 56/88 (63.64%), Query Frame = 0


Query: 24  APVYLSAAFEYPAAEVLELADNATRDNER---------------RGADHLLSDVNIAN-G 83
           APVYLSA  EY AAEVLELA NA RDN++                    LL DV IAN G
Sbjct: 52  APVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGG 111

Query: 84  VLPNIHQNLLPNMAGSGKNNIESASQEF 96
           VLPNIHQNLLP  AGSGK +I SASQEF
Sbjct: 112 VLPNIHQNLLPKKAGSGKGDIGSASQEF 139

[Close]

BLAST of CmoCh08G003700 vs. NCBI nr
Match: XP_008451417.1 (PREDICTED: histone H2AX [Cucumis melo] >KAA0057549.1 histone H2AX [Cucumis melo var. makuwa] >TYK18270.1 histone H2AX [Cucumis melo var. makuwa])

HSP 1 Score: 84.0 bits (206), Expect = 7.9e-13
Identity = 52/88 (59.09%), Postives = 55/88 (62.50%), Query Frame = 0


Query: 24  APVYLSAAFEYPAAEVLELADNATRDNER---------------RGADHLLSDVNIAN-G 83
           APVYLSA  EY AAEVLELA NA RDN++                    LL DV IAN G
Sbjct: 52  APVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGG 111

Query: 84  VLPNIHQNLLPNMAGSGKNNIESASQEF 96
           VLPNIHQ LLP  AGSGK +I SASQEF
Sbjct: 112 VLPNIHQTLLPKKAGSGKGDIGSASQEF 139

[Close]

BLAST of CmoCh08G003700 vs. TAIR 10
Match: AT1G08880.1 (Histone superfamily protein )

HSP 1 Score: 76.6 bits (187), Expect = 1.2e-14
Identity = 48/88 (54.55%), Postives = 52/88 (59.09%), Query Frame = 0


Query: 24  APVYLSAAFEYPAAEVLELADNATRDNER---------------RGADHLLSDVNIAN-G 83
           APVYLSA  EY AAEVLELA NA RDN++                    LL  V IAN G
Sbjct: 55  APVYLSAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIANGG 114

Query: 84  VLPNIHQNLLPNMAGSGKNNIESASQEF 96
           VLPNIHQ LLP+  G  K +I SASQEF
Sbjct: 115 VLPNIHQTLLPSKVGKNKGDIGSASQEF 142

[Close]

BLAST of CmoCh08G003700 vs. TAIR 10
Match: AT1G54690.1 (gamma histone variant H2AX )

HSP 1 Score: 76.6 bits (187), Expect = 1.2e-14
Identity = 48/88 (54.55%), Postives = 52/88 (59.09%), Query Frame = 0


Query: 24  APVYLSAAFEYPAAEVLELADNATRDNER---------------RGADHLLSDVNIAN-G 83
           APVYLSA  EY AAEVLELA NA RDN++                    LL  V IAN G
Sbjct: 55  APVYLSAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIANGG 114

Query: 84  VLPNIHQNLLPNMAGSGKNNIESASQEF 96
           VLPNIHQ LLP+  G  K +I SASQEF
Sbjct: 115 VLPNIHQTLLPSKVGKNKGDIGSASQEF 142

[Close]

BLAST of CmoCh08G003700 vs. TAIR 10
Match: AT4G27230.1 (histone H2A 2 )

HSP 1 Score: 65.1 bits (157), Expect = 3.5e-11
Identity = 41/78 (52.56%), Postives = 45/78 (57.69%), Query Frame = 0


Query: 24  APVYLSAAFEYPAAEVLELADNATRDNER---------------RGADHLLSDVNIAN-G 83
           APVYL+A  EY AAEVLELA NA RDN++                    LL DV IAN G
Sbjct: 49  APVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGG 108

Query: 84  VLPNIHQNLLPNMAGSGK 86
           V+PNIH  LLP  AGS K
Sbjct: 109 VMPNIHNLLLPKKAGSSK 126

[Close]

BLAST of CmoCh08G003700 vs. TAIR 10
Match: AT4G27230.2 (histone H2A 2 )

HSP 1 Score: 65.1 bits (157), Expect = 3.5e-11
Identity = 41/78 (52.56%), Postives = 45/78 (57.69%), Query Frame = 0


Query: 24  APVYLSAAFEYPAAEVLELADNATRDNER---------------RGADHLLSDVNIAN-G 83
           APVYL+A  EY AAEVLELA NA RDN++                    LL DV IAN G
Sbjct: 49  APVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGG 108

Query: 84  VLPNIHQNLLPNMAGSGK 86
           V+PNIH  LLP  AGS K
Sbjct: 109 VMPNIHNLLLPKKAGSSK 126

[Close]

BLAST of CmoCh08G003700 vs. TAIR 10
Match: AT3G20670.1 (histone H2A 13 )

HSP 1 Score: 63.9 bits (154), Expect = 7.8e-11
Identity = 40/78 (51.28%), Postives = 45/78 (57.69%), Query Frame = 0


Query: 24  APVYLSAAFEYPAAEVLELADNATRDNER---------------RGADHLLSDVNIAN-G 83
           APVYL+A  EY AAEVLELA NA RDN++                    LL DV IAN G
Sbjct: 49  APVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGG 108

Query: 84  VLPNIHQNLLPNMAGSGK 86
           V+PNIH  LLP  AG+ K
Sbjct: 109 VMPNIHSLLLPKKAGASK 126

The following BLAST results are available for this feature:

BLAST of CmoCh08G003700 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O65759	9.6e-14	55.68	Histone H2AX OS=Cicer arietinum OX=3827 GN=HIS2A PE=2 SV=1	[more]
O04848	1.6e-13	54.55	Probable histone H2AXa OS=Arabidopsis thaliana OX=3702 GN=At1g08880 PE=1 SV=1	[more]
Q9S9K7	1.6e-13	54.55	Probable histone H2AXb OS=Arabidopsis thaliana OX=3702 GN=At1g54690 PE=1 SV=1	[more]
P35063	2.4e-12	53.41	Histone H2AX OS=Picea abies OX=3329 PE=2 SV=1	[more]
A2ZL69	3.1e-12	53.41	Probable histone H2AXb OS=Oryza sativa subsp. indica OX=39946 GN=OsI_037312 PE=3...	[more]

BLAST of CmoCh08G003700 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JMN9	7.7e-14	60.23	Histone H2A OS=Cucurbita maxima OX=3661 GN=LOC111488262 PE=3 SV=1	[more]
A0A6J1D8Q1	7.7e-14	60.23	Histone H2A OS=Momordica charantia OX=3673 GN=LOC111018409 PE=3 SV=1	[more]
A0A6J1GNQ0	7.7e-14	60.23	Histone H2A OS=Cucurbita moschata OX=3662 GN=LOC111456077 PE=3 SV=1	[more]
A0A5A7UVH7	3.8e-13	59.09	Histone H2A OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411G002130 P...	[more]
A0A0A0K7H2	3.8e-13	59.09	Histone H2A OS=Cucumis sativus OX=3659 GN=Csa_7G390230 PE=3 SV=1	[more]

BLAST of CmoCh08G003700 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6593149.1	5.4e-30	98.61	putative histone H2AXa, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAG7014408.1	1.6e-13	60.23	Histone H2AX, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022953583.1	1.6e-13	60.23	histone H2AX [Cucurbita moschata] >XP_022991732.1 histone H2AX [Cucurbita maxima...	[more]
XP_022150163.1	1.6e-13	60.23	histone H2AX [Momordica charantia]	[more]
XP_008451417.1	7.9e-13	59.09	PREDICTED: histone H2AX [Cucumis melo] >KAA0057549.1 histone H2AX [Cucumis melo ...	[more]

BLAST of CmoCh08G003700 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G08880.1	1.2e-14	54.55	Histone superfamily protein	[more]
AT1G54690.1	1.2e-14	54.55	gamma histone variant H2AX	[more]
AT4G27230.1	3.5e-11	52.56	histone H2A 2	[more]
AT4G27230.2	3.5e-11	52.56	histone H2A 2	[more]
AT3G20670.1	7.8e-11	51.28	histone H2A 13	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002119	Histone H2A	SMART	SM00414	h2a4	coord: 2..83 e-value: 0.0017 score: 10.1
IPR009072	Histone-fold	GENE3D	1.10.20.10	Histone, subunit A	coord: 20..89 e-value: 1.3E-11 score: 46.3
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 24..78
IPR032454	Histone H2A, C-terminal domain	PFAM	PF16211	Histone_H2A_C	coord: 57..84 e-value: 2.7E-7 score: 30.2
None	No IPR available	PANTHER	PTHR23430	HISTONE H2A	coord: 57..93 coord: 24..52
None	No IPR available	PANTHER	PTHR23430:SF308	HISTONE H2AXA-RELATED	coord: 57..93 coord: 24..52

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh08G003700.1	CmoCh08G003700.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0000786	nucleosome
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046982	protein heterodimerization activity