CmoCh08G003660 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh08G003660
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionMethyl-CpG-binding domain-containing protein 4
LocationCmo_Chr08: 2294195 .. 2296083 (-)
RNA-Seq ExpressionCmoCh08G003660
SyntenyCmoCh08G003660
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ACTACCAACAAATTCCGCTAGGCAGTTGGAGATTGGAGACCACACCAGAGAGAGAATCGTCCAGCGGCATGGCCGCCGTCAAGCCCCCGAAGACGACGCCGGCGAAGGTACGGCCGGAACTCCATCCTCGTTCTCCTAATTGTTCTCTATATCCTCATAATTTTCCTTCTGATCGGATTCAATTGATTTTCTTTCTTTTGGCTTCTCGGAAATTGAAACCCTTCGATTCCGAAGATTCAAATGGAAAATTGGTAGCTAGAAAAAGGTTCTACTAAAACTGATGCTGCTTGGAGATGGTTGAGATTCCTTTATTTTTCTCCTTTAACAAGTACTATGGCATGACAGAAGTTTTGTTCAGAATGTTTTATGATAAAATAGGGATAAATTATTCGATCCAGCCGCTGCCTCTAAATGACCGTATAGGTGATAGTCCCTAATATCAACTAGACACAAATTTGAAGTACTTTTGTAGTTTCTCTCATATGTTTATTAGTGTAAAATTTTCAGTTTCATCTAATAATTTTTAGTAAACAGGGGATTTGAATCTTGATCCATAGGGGATACTATCACTTGAGATTTGCTTAACTATGGAAACAGGGCGATTTGCAAAACTTGATACTAGTTTGTAGGTCAATCTCTTAGTATTTTTTGAGAATCAGTGCTCCTTTCGATCAATTCGCAGTAATTCAAACGTAGCTATACAGAAATTCTTGCAAGTGAGTCATAATATTTGTTGGCAATGGCAGTAGGAAAGTTGTCTTGATATTCAGAGTTAGCTGTTCTAGCACACTCAATTTTATTCAGTTGGTTCTTGACTGTGTTCTTTAGATATGGTCTTGTCTGTTTTGTCTTAGGATATGGTGAATTTTATGAGAATTTTATGAGAATTTTGAGTGCTTAGTATTTACTAAGATTGTTTTACAAATTCCAAAGTCTATTTAAAGTCATATCATCACTGGATCAATTTGATTTCTCCAAATCTTGAAGTTTAGAGTGAAAGTTAAGTGATCATAAGTGTGAGTTTTACAAATTTCAACTTGGAACTTGCTGGGGATCTTTATTTGTGGTTGCATTGGCTTTGAATCTATTGGCTTTGAATCTATGAATAACAAGTCCATGTTAATTATGGAAGCCTCTTTTGGTGTAAGCTAATGAGCTAGTTTATAGGCTCCAGGGCTGCCAGTAGGTCTGTATGCTGCGCAATGCGAGGAATGCTTCAAATGGAGGTTGATAAGCAGCCAAGAAGAGTACGAAGATATTAGAAGCAGATTGATAGAAGAACCCTTTACTTGCCATAGGAAAACCGACACTTCTTGTGAGGATCCTCCTGATATCGACTACGATACAACTCGAACTTGGGTCATTGACAAGCCTAACCTCCCAAAGACTCCAAAAGGTTTCAAGAGGCGTCTGGTGCTGAGAAGGAATTTTTCTAAATTAGACGCTTACTATGTCACACCGACCGGGAAAACGGTTAGATCATCTACGAAGATGCTAGCCTTTGTAGAAGCAAATCCACAATACAAGGATATACCTCTTTCAGACTTCAGTTTTGCAGTCCCAAAAGTAATGGAAGAAACTGTACCTGAAAGCATCTTGAAATCTTGCTTTAGTAGTTGCAAAAGAAGTAAGAAAACAAAGGATGAATCTGTTGATATTGACGGAAGATGACAATCAGTTCATTGCAGCATTCAAGTGTCTATTCTTTGAGAAAAAAAACCAGTTAGTGAAAGGATTCTGCTGTTTTGGCTTGAAAGATGTAGCTTGGTATTTCTCCTCCTATTATTGTACCATTTTCTTGTTCATTTACAAGAACAATTTGGACTATTGTATATATGGCCATTTTGATGATAATCAGAGAAGATTCTTGGACCTCGGATGAGTTCGAC

mRNA sequence

ACTACCAACAAATTCCGCTAGGCAGTTGGAGATTGGAGACCACACCAGAGAGAGAATCGTCCAGCGGCATGGCCGCCGTCAAGCCCCCGAAGACGACGCCGGCGAAGGCTCCAGGGCTGCCAGTAGGTCTGTATGCTGCGCAATGCGAGGAATGCTTCAAATGGAGGTTGATAAGCAGCCAAGAAGAGTACGAAGATATTAGAAGCAGATTGATAGAAGAACCCTTTACTTGCCATAGGAAAACCGACACTTCTTGTGAGGATCCTCCTGATATCGACTACGATACAACTCGAACTTGGGTCATTGACAAGCCTAACCTCCCAAAGACTCCAAAAGGTTTCAAGAGGCGTCTGGTGCTGAGAAGGAATTTTTCTAAATTAGACGCTTACTATGTCACACCGACCGGGAAAACGGTTAGATCATCTACGAAGATGCTAGCCTTTGTAGAAGCAAATCCACAATACAAGGATATACCTCTTTCAGACTTCAGTTTTGCAGTCCCAAAAGTAATGGAAGAAACTGTACCTGAAAGCATCTTGAAATCTTGCTTTAGTAGTTGCAAAAGAAGTAAGAAAACAAAGGATGAATCTGTTGATATTGACGGAAGATGACAATCAGTTCATTGCAGCATTCAAGTGTCTATTCTTTGAGAAAAAAAACCAGTTAGTGAAAGGATTCTGCTGTTTTGGCTTGAAAGATGTAGCTTGGTATTTCTCCTCCTATTATTGTACCATTTTCTTGTTCATTTACAAGAACAATTTGGACTATTGTATATATGGCCATTTTGATGATAATCAGAGAAGATTCTTGGACCTCGGATGAGTTCGAC

Coding sequence (CDS)

ATGGCCGCCGTCAAGCCCCCGAAGACGACGCCGGCGAAGGCTCCAGGGCTGCCAGTAGGTCTGTATGCTGCGCAATGCGAGGAATGCTTCAAATGGAGGTTGATAAGCAGCCAAGAAGAGTACGAAGATATTAGAAGCAGATTGATAGAAGAACCCTTTACTTGCCATAGGAAAACCGACACTTCTTGTGAGGATCCTCCTGATATCGACTACGATACAACTCGAACTTGGGTCATTGACAAGCCTAACCTCCCAAAGACTCCAAAAGGTTTCAAGAGGCGTCTGGTGCTGAGAAGGAATTTTTCTAAATTAGACGCTTACTATGTCACACCGACCGGGAAAACGGTTAGATCATCTACGAAGATGCTAGCCTTTGTAGAAGCAAATCCACAATACAAGGATATACCTCTTTCAGACTTCAGTTTTGCAGTCCCAAAAGTAATGGAAGAAACTGTACCTGAAAGCATCTTGAAATCTTGCTTTAGTAGTTGCAAAAGAAGTAAGAAAACAAAGGATGAATCTGTTGATATTGACGGAAGATGA

Protein sequence

MAAVKPPKTTPAKAPGLPVGLYAAQCEECFKWRLISSQEEYEDIRSRLIEEPFTCHRKTDTSCEDPPDIDYDTTRTWVIDKPNLPKTPKGFKRRLVLRRNFSKLDAYYVTPTGKTVRSSTKMLAFVEANPQYKDIPLSDFSFAVPKVMEETVPESILKSCFSSCKRSKKTKDESVDIDGR
Homology
[Close]
BLAST of CmoCh08G003660 vs. ExPASy Swiss-Prot
Match: Q9LYB9 (Methyl-CpG-binding domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=MBD4 PE=1 SV=1)

HSP 1 Score: 211.1 bits (536), Expect = 1.1e-53
Identity = 94/147 (63.95%), Postives = 118/147 (80.27%), Query Frame = 0 

Query: 7   PKTTPAKAPGLPVGLYAAQCEECFKWRLISSQEEYEDIRSRLIEEPFTCHRKTDTSCEDP 66
           PK     APG  +  YAAQC+ C KWR+I SQEEYEDIRS+++E+PF C +K   SCE+P
Sbjct: 13  PKAKKDVAPGRLIDTYAAQCDNCHKWRVIDSQEEYEDIRSKMLEDPFNCQKKQGMSCEEP 72

Query: 67  PDIDYDTTRTWVIDKPNLPKTPKGFKRRLVLRRNFSKLDAYYVTPTGKTVRSSTKMLAFV 126
            DIDYD++RTWVIDKP LPKTPKGFKR LVLR+++SK+D YY TPTGK +RS  ++ AFV
Sbjct: 73  ADIDYDSSRTWVIDKPGLPKTPKGFKRSLVLRKDYSKMDTYYFTPTGKKLRSRNEIAAFV 132

Query: 127 EANPQYKDIPLSDFSFAVPKVMEETVP 154
           EANP++++ PL DF+F VPKVME+TVP
Sbjct: 133 EANPEFRNAPLGDFNFTVPKVMEDTVP 159

[Close]
BLAST of CmoCh08G003660 vs. ExPASy Swiss-Prot
Match: Q5XEN5 (Methyl-CpG-binding domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=MBD1 PE=1 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 3.9e-48
Identity = 86/146 (58.90%), Postives = 113/146 (77.40%), Query Frame = 0 

Query: 12  AKAPGLPVGLYAAQCEECFKWRLISSQEEYEDIRSRLIEEPFTCHRKTDTSCEDPPDIDY 71
           A  PG  + ++A QCE+C KWR I +Q+EYEDIRSR+ E+PF C  K   SCED  D++Y
Sbjct: 45  AGTPGRSIDVFAVQCEKCMKWRKIDTQDEYEDIRSRVQEDPFFCKTKEGVSCEDVGDLNY 104

Query: 72  DTTRTWVIDKPNLPKTPKGFKRRLVLRRNFSKLDAYYVTPTGKTVRSSTKMLAFVEANPQ 131
           D++RTWVIDKP LP+TP+GFKR L+LR+++SK+DAYY+TPTGK ++S  ++ AF++AN  
Sbjct: 105 DSSRTWVIDKPGLPRTPRGFKRSLILRKDYSKMDAYYITPTGKKLKSRNEIAAFIDANQD 164

Query: 132 YKDIPLSDFSFAVPKVMEETVPESIL 158
           YK   L DF+F VPKVMEETVP  IL
Sbjct: 165 YKYALLGDFNFTVPKVMEETVPSGIL 190

[Close]
BLAST of CmoCh08G003660 vs. ExPASy Swiss-Prot
Match: Q8LA53 (Methyl-CpG-binding domain-containing protein 2 OS=Arabidopsis thaliana OX=3702 GN=MBD2 PE=1 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 5.5e-26
Identity = 58/140 (41.43%), Postives = 86/140 (61.43%), Query Frame = 0 

Query: 19  VGLYAAQCEECFKWRLISSQEEYEDIRSRLIEEPFTCHR----KTDTSCEDPPDIDYDTT 78
           +G +  QC  CFKWRL+ S ++YE+IR +L+E PF C      K D SC+ P DI  D T
Sbjct: 56  IGAFTVQCASCFKWRLMPSMQKYEEIREQLLENPFFCDTAREWKPDISCDVPADIYQDGT 115

Query: 79  RTWVIDKPNLPKTPKGFKRRLVLRRNFSK--LDAYYVTPTGKTVRSSTKMLAFVEANPQY 138
           R W IDKPN+ + P G++R L +R        D YYV P+GK +RS+ ++  ++  N +Y
Sbjct: 116 RLWAIDKPNISRPPAGWQRLLRIRGEGGTRFADVYYVAPSGKKLRSTVEVQKYLNDNSEY 175

Query: 139 --KDIPLSDFSFAVPKVMEE 151
             + + LS FSF +PK +++
Sbjct: 176 IGEGVKLSQFSFQIPKPLQD 195

[Close]
BLAST of CmoCh08G003660 vs. ExPASy Swiss-Prot
Match: Q4PSK1 (Methyl-CpG-binding domain-containing protein 3 OS=Arabidopsis thaliana OX=3702 GN=MBD3 PE=2 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 4.8e-22
Identity = 63/162 (38.89%), Postives = 96/162 (59.26%), Query Frame = 0 

Query: 22  YAAQCEECFKWRLISSQEEYEDIRSRLIEEPFTCHRKTDTSCEDPPD--IDYDT-TRTWV 81
           YAAQC +C K R I SQE+YE+IRS+ +E+ F C R     CE+P D  +++D+ T  W 
Sbjct: 12  YAAQCWKCLKVRSIESQEDYEEIRSKTLEKFFECKR-----CEEPGDMVMNFDSLTMRWF 71

Query: 82  IDKPNLPKTPKGFKRRLVLRRNFSKLDAYY--VTPTGKTVRSSTKMLAFVEANPQYKDIP 141
            D+ ++PKTP+G KR LV+R N  K+D YY  + P  K  +S  ++  F+E   ++KD+ 
Sbjct: 72  QDEHSIPKTPQGLKRVLVVRTNCVKVDVYYESLAPRRKRFKSIKEVATFIEDKEEFKDMT 131

Query: 142 LSDFSFAVPKVMEETVPESILKSCFSSCKRSKKTKDESVDID 179
           L + SFA PK ++      + K    S   S+ T+++ V  D
Sbjct: 132 LEEVSFAAPKRLK------LKKKPVDSHSSSRNTEEDGVSRD 162

[Close]
BLAST of CmoCh08G003660 vs. ExPASy Swiss-Prot
Match: Q9FZP6 (Putative methyl-CpG-binding domain protein 12 OS=Arabidopsis thaliana OX=3702 GN=MBD12 PE=3 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 5.7e-15
Identity = 51/159 (32.08%), Postives = 85/159 (53.46%), Query Frame = 0 

Query: 25  QCEECFKWRLISSQEEYEDIRSRLIEEPFTCHRKT----DTSCEDPPDIDYDTTRTWVID 84
           QC +C KWRLI S + Y  I+   ++ PF C   +    + SC  P   D  T  TW   
Sbjct: 3   QCTDCKKWRLIPSMQHYNIIKETQLQTPFVCGTTSGWTPNMSCNVPQ--DGTTCDTW--- 62

Query: 85  KPNLPKTPKGFKRRLVLRRNFSKL-DAYYVTPTGKTVRSSTKMLAFVEANPQY--KDIPL 144
            P++P  P G+ R + +R   +K  D YY  P+G+ +RSS ++ +F++ +P+Y  + +  
Sbjct: 63  -PSIPPIPTGWSRSVHIRSESTKFADVYYFPPSGERLRSSAEVQSFLDNHPEYVREGVNR 122

Query: 145 SDFSFAVPKVMEETVPESILKSCFSSCKRSKKTKDESVD 177
           S FSF +PK ++    ++ +K      KR K +KD + +
Sbjct: 123 SQFSFQIPKPLD----DNYVKKRTRPVKRRKSSKDNNCE 151

[Close]
BLAST of CmoCh08G003660 vs. ExPASy TrEMBL
Match: A0A6J1H964 (methyl-CpG-binding domain-containing protein 4-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111461200 PE=4 SV=1)

HSP 1 Score: 368.2 bits (944), Expect = 1.9e-98
Identity = 180/180 (100.00%), Postives = 180/180 (100.00%), Query Frame = 0 

Query: 1   MAAVKPPKTTPAKAPGLPVGLYAAQCEECFKWRLISSQEEYEDIRSRLIEEPFTCHRKTD 60
           MAAVKPPKTTPAKAPGLPVGLYAAQCEECFKWRLISSQEEYEDIRSRLIEEPFTCHRKTD
Sbjct: 1   MAAVKPPKTTPAKAPGLPVGLYAAQCEECFKWRLISSQEEYEDIRSRLIEEPFTCHRKTD 60

Query: 61  TSCEDPPDIDYDTTRTWVIDKPNLPKTPKGFKRRLVLRRNFSKLDAYYVTPTGKTVRSST 120
           TSCEDPPDIDYDTTRTWVIDKPNLPKTPKGFKRRLVLRRNFSKLDAYYVTPTGKTVRSST
Sbjct: 61  TSCEDPPDIDYDTTRTWVIDKPNLPKTPKGFKRRLVLRRNFSKLDAYYVTPTGKTVRSST 120

Query: 121 KMLAFVEANPQYKDIPLSDFSFAVPKVMEETVPESILKSCFSSCKRSKKTKDESVDIDGR 180
           KMLAFVEANPQYKDIPLSDFSFAVPKVMEETVPESILKSCFSSCKRSKKTKDESVDIDGR
Sbjct: 121 KMLAFVEANPQYKDIPLSDFSFAVPKVMEETVPESILKSCFSSCKRSKKTKDESVDIDGR 180

[Close]
BLAST of CmoCh08G003660 vs. ExPASy TrEMBL
Match: A0A6J1KWY1 (methyl-CpG-binding domain-containing protein 4-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111497887 PE=4 SV=1)

HSP 1 Score: 362.1 bits (928), Expect = 1.4e-96
Identity = 178/180 (98.89%), Postives = 178/180 (98.89%), Query Frame = 0 

Query: 1   MAAVKPPKTTPAKAPGLPVGLYAAQCEECFKWRLISSQEEYEDIRSRLIEEPFTCHRKTD 60
           MAAVKPPKTTPAKAPGLPVGLYAAQCEECFKWRLISSQEEYEDIRSRLIEEPFTCHRKTD
Sbjct: 1   MAAVKPPKTTPAKAPGLPVGLYAAQCEECFKWRLISSQEEYEDIRSRLIEEPFTCHRKTD 60

Query: 61  TSCEDPPDIDYDTTRTWVIDKPNLPKTPKGFKRRLVLRRNFSKLDAYYVTPTGKTVRSST 120
           TSCEDPPDIDYDTTRTWVIDKPNLPKTPKGFKRRLVLRRNFSKLDAYYVTPTGKTVRSST
Sbjct: 61  TSCEDPPDIDYDTTRTWVIDKPNLPKTPKGFKRRLVLRRNFSKLDAYYVTPTGKTVRSST 120

Query: 121 KMLAFVEANPQYKDIPLSDFSFAVPKVMEETVPESILKSCFSSCKRSKKTKDESVDIDGR 180
           KML FVEANPQYKDIPLSDFSFAVPKVMEETVPESILKS FSSCKRSKKTKDESVDIDGR
Sbjct: 121 KMLTFVEANPQYKDIPLSDFSFAVPKVMEETVPESILKSGFSSCKRSKKTKDESVDIDGR 180

[Close]
BLAST of CmoCh08G003660 vs. ExPASy TrEMBL
Match: A0A6J1H7I8 (methyl-CpG-binding domain-containing protein 4-like isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC111461200 PE=4 SV=1)

HSP 1 Score: 344.4 bits (882), Expect = 3.0e-91
Identity = 167/168 (99.40%), Postives = 168/168 (100.00%), Query Frame = 0 

Query: 13  KAPGLPVGLYAAQCEECFKWRLISSQEEYEDIRSRLIEEPFTCHRKTDTSCEDPPDIDYD 72
           +APGLPVGLYAAQCEECFKWRLISSQEEYEDIRSRLIEEPFTCHRKTDTSCEDPPDIDYD
Sbjct: 3   EAPGLPVGLYAAQCEECFKWRLISSQEEYEDIRSRLIEEPFTCHRKTDTSCEDPPDIDYD 62

Query: 73  TTRTWVIDKPNLPKTPKGFKRRLVLRRNFSKLDAYYVTPTGKTVRSSTKMLAFVEANPQY 132
           TTRTWVIDKPNLPKTPKGFKRRLVLRRNFSKLDAYYVTPTGKTVRSSTKMLAFVEANPQY
Sbjct: 63  TTRTWVIDKPNLPKTPKGFKRRLVLRRNFSKLDAYYVTPTGKTVRSSTKMLAFVEANPQY 122

Query: 133 KDIPLSDFSFAVPKVMEETVPESILKSCFSSCKRSKKTKDESVDIDGR 181
           KDIPLSDFSFAVPKVMEETVPESILKSCFSSCKRSKKTKDESVDIDGR
Sbjct: 123 KDIPLSDFSFAVPKVMEETVPESILKSCFSSCKRSKKTKDESVDIDGR 170

[Close]
BLAST of CmoCh08G003660 vs. ExPASy TrEMBL
Match: A0A6J1HB46 (methyl-CpG-binding domain-containing protein 4-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111461200 PE=4 SV=1)

HSP 1 Score: 340.1 bits (871), Expect = 5.6e-90
Identity = 165/165 (100.00%), Postives = 165/165 (100.00%), Query Frame = 0 

Query: 16  GLPVGLYAAQCEECFKWRLISSQEEYEDIRSRLIEEPFTCHRKTDTSCEDPPDIDYDTTR 75
           GLPVGLYAAQCEECFKWRLISSQEEYEDIRSRLIEEPFTCHRKTDTSCEDPPDIDYDTTR
Sbjct: 38  GLPVGLYAAQCEECFKWRLISSQEEYEDIRSRLIEEPFTCHRKTDTSCEDPPDIDYDTTR 97

Query: 76  TWVIDKPNLPKTPKGFKRRLVLRRNFSKLDAYYVTPTGKTVRSSTKMLAFVEANPQYKDI 135
           TWVIDKPNLPKTPKGFKRRLVLRRNFSKLDAYYVTPTGKTVRSSTKMLAFVEANPQYKDI
Sbjct: 98  TWVIDKPNLPKTPKGFKRRLVLRRNFSKLDAYYVTPTGKTVRSSTKMLAFVEANPQYKDI 157

Query: 136 PLSDFSFAVPKVMEETVPESILKSCFSSCKRSKKTKDESVDIDGR 181
           PLSDFSFAVPKVMEETVPESILKSCFSSCKRSKKTKDESVDIDGR
Sbjct: 158 PLSDFSFAVPKVMEETVPESILKSCFSSCKRSKKTKDESVDIDGR 202

[Close]
BLAST of CmoCh08G003660 vs. ExPASy TrEMBL
Match: A0A6J1KV79 (methyl-CpG-binding domain-containing protein 4-like isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111497887 PE=4 SV=1)

HSP 1 Score: 338.2 bits (866), Expect = 2.1e-89
Identity = 165/168 (98.21%), Postives = 166/168 (98.81%), Query Frame = 0 

Query: 13  KAPGLPVGLYAAQCEECFKWRLISSQEEYEDIRSRLIEEPFTCHRKTDTSCEDPPDIDYD 72
           +APGLPVGLYAAQCEECFKWRLISSQEEYEDIRSRLIEEPFTCHRKTDTSCEDPPDIDYD
Sbjct: 3   EAPGLPVGLYAAQCEECFKWRLISSQEEYEDIRSRLIEEPFTCHRKTDTSCEDPPDIDYD 62

Query: 73  TTRTWVIDKPNLPKTPKGFKRRLVLRRNFSKLDAYYVTPTGKTVRSSTKMLAFVEANPQY 132
           TTRTWVIDKPNLPKTPKGFKRRLVLRRNFSKLDAYYVTPTGKTVRSSTKML FVEANPQY
Sbjct: 63  TTRTWVIDKPNLPKTPKGFKRRLVLRRNFSKLDAYYVTPTGKTVRSSTKMLTFVEANPQY 122

Query: 133 KDIPLSDFSFAVPKVMEETVPESILKSCFSSCKRSKKTKDESVDIDGR 181
           KDIPLSDFSFAVPKVMEETVPESILKS FSSCKRSKKTKDESVDIDGR
Sbjct: 123 KDIPLSDFSFAVPKVMEETVPESILKSGFSSCKRSKKTKDESVDIDGR 170

[Close]
BLAST of CmoCh08G003660 vs. NCBI nr
Match: XP_022960475.1 (methyl-CpG-binding domain-containing protein 4-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 368.2 bits (944), Expect = 4.0e-98
Identity = 180/180 (100.00%), Postives = 180/180 (100.00%), Query Frame = 0 

Query: 1   MAAVKPPKTTPAKAPGLPVGLYAAQCEECFKWRLISSQEEYEDIRSRLIEEPFTCHRKTD 60
           MAAVKPPKTTPAKAPGLPVGLYAAQCEECFKWRLISSQEEYEDIRSRLIEEPFTCHRKTD
Sbjct: 1   MAAVKPPKTTPAKAPGLPVGLYAAQCEECFKWRLISSQEEYEDIRSRLIEEPFTCHRKTD 60

Query: 61  TSCEDPPDIDYDTTRTWVIDKPNLPKTPKGFKRRLVLRRNFSKLDAYYVTPTGKTVRSST 120
           TSCEDPPDIDYDTTRTWVIDKPNLPKTPKGFKRRLVLRRNFSKLDAYYVTPTGKTVRSST
Sbjct: 61  TSCEDPPDIDYDTTRTWVIDKPNLPKTPKGFKRRLVLRRNFSKLDAYYVTPTGKTVRSST 120

Query: 121 KMLAFVEANPQYKDIPLSDFSFAVPKVMEETVPESILKSCFSSCKRSKKTKDESVDIDGR 180
           KMLAFVEANPQYKDIPLSDFSFAVPKVMEETVPESILKSCFSSCKRSKKTKDESVDIDGR
Sbjct: 121 KMLAFVEANPQYKDIPLSDFSFAVPKVMEETVPESILKSCFSSCKRSKKTKDESVDIDGR 180

[Close]
BLAST of CmoCh08G003660 vs. NCBI nr
Match: XP_023513509.1 (methyl-CpG-binding domain-containing protein 4-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 362.8 bits (930), Expect = 1.7e-96
Identity = 178/180 (98.89%), Postives = 179/180 (99.44%), Query Frame = 0 

Query: 1   MAAVKPPKTTPAKAPGLPVGLYAAQCEECFKWRLISSQEEYEDIRSRLIEEPFTCHRKTD 60
           MAAVKPPKTTPAKAPGLPVGLYAAQCEECFKWRLISSQEEYEDIRSRLIEEPFTCHRKTD
Sbjct: 1   MAAVKPPKTTPAKAPGLPVGLYAAQCEECFKWRLISSQEEYEDIRSRLIEEPFTCHRKTD 60

Query: 61  TSCEDPPDIDYDTTRTWVIDKPNLPKTPKGFKRRLVLRRNFSKLDAYYVTPTGKTVRSST 120
           TSCEDPPDIDYDTTRTWVIDKPNLPKTPKGFKRRLVLRRNFSKLDAYYVTPTGKTVRSST
Sbjct: 61  TSCEDPPDIDYDTTRTWVIDKPNLPKTPKGFKRRLVLRRNFSKLDAYYVTPTGKTVRSST 120

Query: 121 KMLAFVEANPQYKDIPLSDFSFAVPKVMEETVPESILKSCFSSCKRSKKTKDESVDIDGR 180
           KM+AFVEANPQYKDIPLSDFSFAVPKVMEETVPESILKS FSSCKRSKKTKDESVDIDGR
Sbjct: 121 KMIAFVEANPQYKDIPLSDFSFAVPKVMEETVPESILKSGFSSCKRSKKTKDESVDIDGR 180

[Close]
BLAST of CmoCh08G003660 vs. NCBI nr
Match: XP_023004659.1 (methyl-CpG-binding domain-containing protein 4-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 362.1 bits (928), Expect = 2.8e-96
Identity = 178/180 (98.89%), Postives = 178/180 (98.89%), Query Frame = 0 

Query: 1   MAAVKPPKTTPAKAPGLPVGLYAAQCEECFKWRLISSQEEYEDIRSRLIEEPFTCHRKTD 60
           MAAVKPPKTTPAKAPGLPVGLYAAQCEECFKWRLISSQEEYEDIRSRLIEEPFTCHRKTD
Sbjct: 1   MAAVKPPKTTPAKAPGLPVGLYAAQCEECFKWRLISSQEEYEDIRSRLIEEPFTCHRKTD 60

Query: 61  TSCEDPPDIDYDTTRTWVIDKPNLPKTPKGFKRRLVLRRNFSKLDAYYVTPTGKTVRSST 120
           TSCEDPPDIDYDTTRTWVIDKPNLPKTPKGFKRRLVLRRNFSKLDAYYVTPTGKTVRSST
Sbjct: 61  TSCEDPPDIDYDTTRTWVIDKPNLPKTPKGFKRRLVLRRNFSKLDAYYVTPTGKTVRSST 120

Query: 121 KMLAFVEANPQYKDIPLSDFSFAVPKVMEETVPESILKSCFSSCKRSKKTKDESVDIDGR 180
           KML FVEANPQYKDIPLSDFSFAVPKVMEETVPESILKS FSSCKRSKKTKDESVDIDGR
Sbjct: 121 KMLTFVEANPQYKDIPLSDFSFAVPKVMEETVPESILKSGFSSCKRSKKTKDESVDIDGR 180

[Close]
BLAST of CmoCh08G003660 vs. NCBI nr
Match: XP_022960477.1 (methyl-CpG-binding domain-containing protein 4-like isoform X3 [Cucurbita moschata])

HSP 1 Score: 344.4 bits (882), Expect = 6.1e-91
Identity = 167/168 (99.40%), Postives = 168/168 (100.00%), Query Frame = 0 

Query: 13  KAPGLPVGLYAAQCEECFKWRLISSQEEYEDIRSRLIEEPFTCHRKTDTSCEDPPDIDYD 72
           +APGLPVGLYAAQCEECFKWRLISSQEEYEDIRSRLIEEPFTCHRKTDTSCEDPPDIDYD
Sbjct: 3   EAPGLPVGLYAAQCEECFKWRLISSQEEYEDIRSRLIEEPFTCHRKTDTSCEDPPDIDYD 62

Query: 73  TTRTWVIDKPNLPKTPKGFKRRLVLRRNFSKLDAYYVTPTGKTVRSSTKMLAFVEANPQY 132
           TTRTWVIDKPNLPKTPKGFKRRLVLRRNFSKLDAYYVTPTGKTVRSSTKMLAFVEANPQY
Sbjct: 63  TTRTWVIDKPNLPKTPKGFKRRLVLRRNFSKLDAYYVTPTGKTVRSSTKMLAFVEANPQY 122

Query: 133 KDIPLSDFSFAVPKVMEETVPESILKSCFSSCKRSKKTKDESVDIDGR 181
           KDIPLSDFSFAVPKVMEETVPESILKSCFSSCKRSKKTKDESVDIDGR
Sbjct: 123 KDIPLSDFSFAVPKVMEETVPESILKSCFSSCKRSKKTKDESVDIDGR 170

[Close]
BLAST of CmoCh08G003660 vs. NCBI nr
Match: KAG7025544.1 (Methyl-CpG-binding domain-containing protein 4, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 340.1 bits (871), Expect = 1.2e-89
Identity = 165/165 (100.00%), Postives = 165/165 (100.00%), Query Frame = 0 

Query: 16  GLPVGLYAAQCEECFKWRLISSQEEYEDIRSRLIEEPFTCHRKTDTSCEDPPDIDYDTTR 75
           GLPVGLYAAQCEECFKWRLISSQEEYEDIRSRLIEEPFTCHRKTDTSCEDPPDIDYDTTR
Sbjct: 155 GLPVGLYAAQCEECFKWRLISSQEEYEDIRSRLIEEPFTCHRKTDTSCEDPPDIDYDTTR 214

Query: 76  TWVIDKPNLPKTPKGFKRRLVLRRNFSKLDAYYVTPTGKTVRSSTKMLAFVEANPQYKDI 135
           TWVIDKPNLPKTPKGFKRRLVLRRNFSKLDAYYVTPTGKTVRSSTKMLAFVEANPQYKDI
Sbjct: 215 TWVIDKPNLPKTPKGFKRRLVLRRNFSKLDAYYVTPTGKTVRSSTKMLAFVEANPQYKDI 274

Query: 136 PLSDFSFAVPKVMEETVPESILKSCFSSCKRSKKTKDESVDIDGR 181
           PLSDFSFAVPKVMEETVPESILKSCFSSCKRSKKTKDESVDIDGR
Sbjct: 275 PLSDFSFAVPKVMEETVPESILKSCFSSCKRSKKTKDESVDIDGR 319

[Close]
BLAST of CmoCh08G003660 vs. TAIR 10
Match: AT3G63030.1 (methyl-CPG-binding domain 4 )

HSP 1 Score: 211.1 bits (536), Expect = 7.5e-55
Identity = 94/147 (63.95%), Postives = 118/147 (80.27%), Query Frame = 0 

Query: 7   PKTTPAKAPGLPVGLYAAQCEECFKWRLISSQEEYEDIRSRLIEEPFTCHRKTDTSCEDP 66
           PK     APG  +  YAAQC+ C KWR+I SQEEYEDIRS+++E+PF C +K   SCE+P
Sbjct: 13  PKAKKDVAPGRLIDTYAAQCDNCHKWRVIDSQEEYEDIRSKMLEDPFNCQKKQGMSCEEP 72

Query: 67  PDIDYDTTRTWVIDKPNLPKTPKGFKRRLVLRRNFSKLDAYYVTPTGKTVRSSTKMLAFV 126
            DIDYD++RTWVIDKP LPKTPKGFKR LVLR+++SK+D YY TPTGK +RS  ++ AFV
Sbjct: 73  ADIDYDSSRTWVIDKPGLPKTPKGFKRSLVLRKDYSKMDTYYFTPTGKKLRSRNEIAAFV 132

Query: 127 EANPQYKDIPLSDFSFAVPKVMEETVP 154
           EANP++++ PL DF+F VPKVME+TVP
Sbjct: 133 EANPEFRNAPLGDFNFTVPKVMEDTVP 159

[Close]
BLAST of CmoCh08G003660 vs. TAIR 10
Match: AT4G22745.1 (methyl-CPG-binding domain 1 )

HSP 1 Score: 192.6 bits (488), Expect = 2.8e-49
Identity = 86/146 (58.90%), Postives = 113/146 (77.40%), Query Frame = 0 

Query: 12  AKAPGLPVGLYAAQCEECFKWRLISSQEEYEDIRSRLIEEPFTCHRKTDTSCEDPPDIDY 71
           A  PG  + ++A QCE+C KWR I +Q+EYEDIRSR+ E+PF C  K   SCED  D++Y
Sbjct: 45  AGTPGRSIDVFAVQCEKCMKWRKIDTQDEYEDIRSRVQEDPFFCKTKEGVSCEDVGDLNY 104

Query: 72  DTTRTWVIDKPNLPKTPKGFKRRLVLRRNFSKLDAYYVTPTGKTVRSSTKMLAFVEANPQ 131
           D++RTWVIDKP LP+TP+GFKR L+LR+++SK+DAYY+TPTGK ++S  ++ AF++AN  
Sbjct: 105 DSSRTWVIDKPGLPRTPRGFKRSLILRKDYSKMDAYYITPTGKKLKSRNEIAAFIDANQD 164

Query: 132 YKDIPLSDFSFAVPKVMEETVPESIL 158
           YK   L DF+F VPKVMEETVP  IL
Sbjct: 165 YKYALLGDFNFTVPKVMEETVPSGIL 190

[Close]
BLAST of CmoCh08G003660 vs. TAIR 10
Match: AT5G35330.1 (methyl-CPG-binding domain protein 02 )

HSP 1 Score: 119.0 bits (297), Expect = 3.9e-27
Identity = 58/140 (41.43%), Postives = 86/140 (61.43%), Query Frame = 0 

Query: 19  VGLYAAQCEECFKWRLISSQEEYEDIRSRLIEEPFTCHR----KTDTSCEDPPDIDYDTT 78
           +G +  QC  CFKWRL+ S ++YE+IR +L+E PF C      K D SC+ P DI  D T
Sbjct: 56  IGAFTVQCASCFKWRLMPSMQKYEEIREQLLENPFFCDTAREWKPDISCDVPADIYQDGT 115

Query: 79  RTWVIDKPNLPKTPKGFKRRLVLRRNFSK--LDAYYVTPTGKTVRSSTKMLAFVEANPQY 138
           R W IDKPN+ + P G++R L +R        D YYV P+GK +RS+ ++  ++  N +Y
Sbjct: 116 RLWAIDKPNISRPPAGWQRLLRIRGEGGTRFADVYYVAPSGKKLRSTVEVQKYLNDNSEY 175

Query: 139 --KDIPLSDFSFAVPKVMEE 151
             + + LS FSF +PK +++
Sbjct: 176 IGEGVKLSQFSFQIPKPLQD 195

[Close]
BLAST of CmoCh08G003660 vs. TAIR 10
Match: AT5G35330.2 (methyl-CPG-binding domain protein 02 )

HSP 1 Score: 119.0 bits (297), Expect = 3.9e-27
Identity = 58/140 (41.43%), Postives = 86/140 (61.43%), Query Frame = 0 

Query: 19  VGLYAAQCEECFKWRLISSQEEYEDIRSRLIEEPFTCHR----KTDTSCEDPPDIDYDTT 78
           +G +  QC  CFKWRL+ S ++YE+IR +L+E PF C      K D SC+ P DI  D T
Sbjct: 56  IGAFTVQCASCFKWRLMPSMQKYEEIREQLLENPFFCDTAREWKPDISCDVPADIYQDGT 115

Query: 79  RTWVIDKPNLPKTPKGFKRRLVLRRNFSK--LDAYYVTPTGKTVRSSTKMLAFVEANPQY 138
           R W IDKPN+ + P G++R L +R        D YYV P+GK +RS+ ++  ++  N +Y
Sbjct: 116 RLWAIDKPNISRPPAGWQRLLRIRGEGGTRFADVYYVAPSGKKLRSTVEVQKYLNDNSEY 175

Query: 139 --KDIPLSDFSFAVPKVMEE 151
             + + LS FSF +PK +++
Sbjct: 176 IGEGVKLSQFSFQIPKPLQD 195

[Close]
BLAST of CmoCh08G003660 vs. TAIR 10
Match: AT5G35330.3 (methyl-CPG-binding domain protein 02 )

HSP 1 Score: 119.0 bits (297), Expect = 3.9e-27
Identity = 58/140 (41.43%), Postives = 86/140 (61.43%), Query Frame = 0 

Query: 19  VGLYAAQCEECFKWRLISSQEEYEDIRSRLIEEPFTCHR----KTDTSCEDPPDIDYDTT 78
           +G +  QC  CFKWRL+ S ++YE+IR +L+E PF C      K D SC+ P DI  D T
Sbjct: 56  IGAFTVQCASCFKWRLMPSMQKYEEIREQLLENPFFCDTAREWKPDISCDVPADIYQDGT 115

Query: 79  RTWVIDKPNLPKTPKGFKRRLVLRRNFSK--LDAYYVTPTGKTVRSSTKMLAFVEANPQY 138
           R W IDKPN+ + P G++R L +R        D YYV P+GK +RS+ ++  ++  N +Y
Sbjct: 116 RLWAIDKPNISRPPAGWQRLLRIRGEGGTRFADVYYVAPSGKKLRSTVEVQKYLNDNSEY 175

Query: 139 --KDIPLSDFSFAVPKVMEE 151
             + + LS FSF +PK +++
Sbjct: 176 IGEGVKLSQFSFQIPKPLQD 195

The following BLAST results are available for this feature:
BLAST of CmoCh08G003660 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9LYB91.1e-5363.95Methyl-CpG-binding domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 G... [more]
Q5XEN53.9e-4858.90Methyl-CpG-binding domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 G... [more]
Q8LA535.5e-2641.43Methyl-CpG-binding domain-containing protein 2 OS=Arabidopsis thaliana OX=3702 G... [more]
Q4PSK14.8e-2238.89Methyl-CpG-binding domain-containing protein 3 OS=Arabidopsis thaliana OX=3702 G... [more]
Q9FZP65.7e-1532.08Putative methyl-CpG-binding domain protein 12 OS=Arabidopsis thaliana OX=3702 GN... [more]
BLAST of CmoCh08G003660 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1H9641.9e-98100.00methyl-CpG-binding domain-containing protein 4-like isoform X2 OS=Cucurbita mosc... [more]
A0A6J1KWY11.4e-9698.89methyl-CpG-binding domain-containing protein 4-like isoform X2 OS=Cucurbita maxi... [more]
A0A6J1H7I83.0e-9199.40methyl-CpG-binding domain-containing protein 4-like isoform X3 OS=Cucurbita mosc... [more]
A0A6J1HB465.6e-90100.00methyl-CpG-binding domain-containing protein 4-like isoform X1 OS=Cucurbita mosc... [more]
A0A6J1KV792.1e-8998.21methyl-CpG-binding domain-containing protein 4-like isoform X3 OS=Cucurbita maxi... [more]
BLAST of CmoCh08G003660 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022960475.14.0e-98100.00methyl-CpG-binding domain-containing protein 4-like isoform X2 [Cucurbita moscha... [more]
XP_023513509.11.7e-9698.89methyl-CpG-binding domain-containing protein 4-like isoform X1 [Cucurbita pepo s... [more]
XP_023004659.12.8e-9698.89methyl-CpG-binding domain-containing protein 4-like isoform X2 [Cucurbita maxima... [more]
XP_022960477.16.1e-9199.40methyl-CpG-binding domain-containing protein 4-like isoform X3 [Cucurbita moscha... [more]
KAG7025544.11.2e-89100.00Methyl-CpG-binding domain-containing protein 4, partial [Cucurbita argyrosperma ... [more]
BLAST of CmoCh08G003660 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G63030.17.5e-5563.95methyl-CPG-binding domain 4 [more]
AT4G22745.12.8e-4958.90methyl-CPG-binding domain 1 [more]
AT5G35330.13.9e-2741.43methyl-CPG-binding domain protein 02 [more]
AT5G35330.23.9e-2741.43methyl-CPG-binding domain protein 02 [more]
AT5G35330.33.9e-2741.43methyl-CPG-binding domain protein 02 [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001739Methyl-CpG DNA bindingSMARTSM00391TAM_2coord: 79..152
e-value: 1.7E-9
score: 47.5
IPR001739Methyl-CpG DNA bindingPFAMPF01429MBDcoord: 83..148
e-value: 2.2E-11
score: 43.3
IPR001739Methyl-CpG DNA bindingPROSITEPS50982MBDcoord: 77..147
score: 13.441353
NoneNo IPR availableGENE3D3.30.890.10coord: 85..146
e-value: 4.9E-12
score: 47.6
NoneNo IPR availableGENE3D3.30.40.100coord: 22..70
e-value: 3.2E-6
score: 28.6
NoneNo IPR availablePANTHERPTHR12396:SF10METHYL-CPG-BINDING DOMAIN-CONTAINING PROTEIN 1-RELATEDcoord: 18..171
NoneNo IPR availablePANTHERPTHR12396METHYL-CPG BINDING PROTEIN, MBDcoord: 18..171
NoneNo IPR availableCDDcd01396MeCP2_MBDcoord: 81..153
e-value: 6.63147E-17
score: 69.7089
IPR011124Zinc finger, CW-typePFAMPF07496zf-CWcoord: 22..68
e-value: 3.9E-11
score: 42.8
IPR011124Zinc finger, CW-typePROSITEPS51050ZF_CWcoord: 16..71
score: 11.437915
IPR016177DNA-binding domain superfamilySUPERFAMILY54171DNA-binding domaincoord: 59..153

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh08G003660.1CmoCh08G003660.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005634 nucleus
molecular_function GO:0003677 DNA binding
molecular_function GO:0008270 zinc ion binding