CmoCh08G003370 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh08G003370
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionMethylthioribose-1-phosphate isomerase
LocationCmo_Chr08: 2086898 .. 2088426 (-)
RNA-Seq ExpressionCmoCh08G003370
SyntenyCmoCh08G003370
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCATGTGGAGTAATCAAGACGGTCCATTTGACTCGTGCAACTTTGCACGTTTCAACGATAACTCAAACAAAAACAAGCCTAGAGAAACATGCACAAAGCTCATCATCACGGGAAGGATGAACACGTGAATCAAAGCTAGATGAGTATCGTTAGGGTACCCAATACTCTCGTGCCATATAAATTTGCCCATGGAATTTCATAGATCTATTAAATAATCGACTCGATCGTTGGGCTGATTTCACACGGCCCATAGCCCAATCAAGTGAAACCCATAGGCCCAAGTAGTTTTTTTTTTTTTTTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACATTTTTTTTGTTGTCCTATAAAGTTAAAATTATATTAGATATTATTTTAAAAATTTTAAATAATAAAATTTTGTGTTCACCAAAACAAATAGGTGGGTTGGGCTATTTGGGCCCAAATTCCATTAATGGGCTGTTTAACAGGCCCACTTTAATACTTGGCAAACACGTTTGAGGTTTCCAAAATACTGGAGTTCATAGCCTCTCGCGCCCACGAATTAAACTTCTTCCGCCGCCCGCCTCCAGTTTTCTTCCCGCGGACCGCCGCCGTCCTTACGAGCTACCTCCTCCTCTCTCTCATACGCCGGCGACTGCTCCGTTCATCTCTCTCGCTTCTATTCGTTGTTTCGTCTGGGTGAGAATTTCTTAAGCTCAGTGATTACAACCATAATCTTCAATAAAAAGAATATGTTCTTTAATTACCTTAAATTTTTATTTTTATTATTAAACTTTCAAATTAATAGTTAACACCACCTCTCCACCTTCACTTCTCAAGCTTTCATCGCCTGGTAAGCTTAATGTTTTAAAATATTAATTTCTTTGATTGTGTTCTACTGATTCTCGCAATTTCTAGCTTCAATCTGTCATCCCTGCTATTTATTTGGTTAAATCTTCATTGATTATCACTTTTACAACTTACCGATTTCTTCATTGTAGAGAAAAAATCTCCCAAAGAGTTGTTGAACTCTCGTGGAGGTATCGAGGAGGAAGTGGCTGCATCTGGTTTCTCTGTTCTGGAACAACTCTGGTTTAGATGTCACTTCCCCTTATTTGGTTTCTGGAGTTATAACAGAGAAGGTAATCTTCTAATTCTTCCTTGAAGTCTGTTTATACAAGGTGAAATGTGTTCTTTATGATAGAACCCTAAAATGAAATTAGTTCCAAATGTTTTTGTTCTTCTTTAATTTGATGTATTACTGAATAGAGTTTTACTGTAGGAATAATTCTTTTGGTCTGA

mRNA sequence

ATGCCATGTGGAGTAATCAAGACGGTCCATTTGACTCGTGCAACTTTGCACTTTTCTTCCCGCGGACCGCCGCCGTCCTTACGAGCTACCTCCTCCTCTCTCTCATACGCCGGCGACTGCTCCGTTCATCTCTCTCGCTTCTATTCGTTGTTTCGTCTGGAGAAAAAATCTCCCAAAGAGTTGTTGAACTCTCGTGGAGGTATCGAGGAGGAAGTGGCTGCATCTGGTTTCTCTGTTCTGGAACAACTCTGGTTTAGATGTCACTTCCCCTTATTTGGTTTCTGGAGTTATAACAGAGAAGGAATAATTCTTTTGGTCTGA

Coding sequence (CDS)

ATGCCATGTGGAGTAATCAAGACGGTCCATTTGACTCGTGCAACTTTGCACTTTTCTTCCCGCGGACCGCCGCCGTCCTTACGAGCTACCTCCTCCTCTCTCTCATACGCCGGCGACTGCTCCGTTCATCTCTCTCGCTTCTATTCGTTGTTTCGTCTGGAGAAAAAATCTCCCAAAGAGTTGTTGAACTCTCGTGGAGGTATCGAGGAGGAAGTGGCTGCATCTGGTTTCTCTGTTCTGGAACAACTCTGGTTTAGATGTCACTTCCCCTTATTTGGTTTCTGGAGTTATAACAGAGAAGGAATAATTCTTTTGGTCTGA

Protein sequence

MPCGVIKTVHLTRATLHFSSRGPPPSLRATSSSLSYAGDCSVHLSRFYSLFRLEKKSPKELLNSRGGIEEEVAASGFSVLEQLWFRCHFPLFGFWSYNREGIILLV
Homology
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BLAST of CmoCh08G003370 vs. ExPASy Swiss-Prot
Match: B9RR88 (Methylthioribose-1-phosphate isomerase OS=Ricinus communis OX=3988 GN=RCOM_0711420 PE=2 SV=1)

HSP 1 Score: 45.1 bits (105), Expect = 5.9e-04
Identity = 20/27 (74.07%), Postives = 25/27 (92.59%), Query Frame = 0 

Query: 53  LEKKSPKELLNSRGGIEEEVAASGFSV 80
           +E++SPKELLNSRGG+ E+VAASG SV
Sbjct: 310 IEERSPKELLNSRGGLGEQVAASGISV 336

The following BLAST results are available for this feature:
BLAST of CmoCh08G003370 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
B9RR885.9e-0474.07Methylthioribose-1-phosphate isomerase OS=Ricinus communis OX=3988 GN=RCOM_07114... [more]
BLAST of CmoCh08G003370 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh08G003370 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh08G003370 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh08G003370.1CmoCh08G003370.1mRNA