CmoCh08G003330 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh08G003330
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Lysine-rich arabinogalactan protein like
Location	Cmo_Chr08: 2063215 .. 2064252 (-)
RNA-Seq Expression	CmoCh08G003330
Synteny	CmoCh08G003330

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTCAATTCAGTCAAAACAGGGACAAATACCGTAAACTTCATAGCGAGCCAAGGCCGGCTACCGTTTCTTAAAGCCCCCCCCGGGAAGACGAAAAGGATGAAGAACAAACCCCCCGATTCACTCAACTTCCAGTTCAATCGCTCAAAGAAAGATCACTTCATCGATGAAAATTTCATATTCACTATCTCATACATGATCGTTCGCTGAGGATTTGTATTTCTTCAACTTCCAGGTCAGTTCGTGTTCAATCTCGTCCGTTTTCTGTGTTCTTAAGCAGCGATTTGTTTCTTTCTTGTTGTTTTCGGTTCATTAGACTGAGGATTTCGCGAGTTCGTCGTTGATTTTTATGTTCTTGTTTAGTGAGGTTATGAGTTGTGAATCTTTAAATGAATTAGGAGTTTTATTCTGCCATGAAAACCTTGATGATTGTAGAACAGTACAGATATGAGTTCTTCACTCTGTTCAAGAATCTAGGTATGAGTCGATTTGGGGATTTTACGATTAAAGAAGACAGAGAGGAAAATCAAAATCGATTGAGTAATCAATCGGGGACAGGATTTCGCCCTGTTCCATTGGAGATTTCTTCGATTCCTGTTTGTCATCCTTCTTCCCCAAAGATTCAACCCCCTTCGACTGATTGTAACCCTAAACCGATTTCACCAACTCCAAGAAGTGATCCAATTCCGATTAATCCTGAAATTTGTGATGATTTTGATGAACATTGCTGTTATAATAAGAGTTCATCCTACCCTGAGCTTTGGGCTGGACCAACTTACTCAAATTCACCCCCTGCAAGTTCATTGCCAATGCCCAATTTCTCAATTCGAAGAAATATAATTTTGTCACTCCAATTGCCCACCGGTTCAACCGCTCAAGCAATCAGAAGAACTCAACCAATTGTGAAATCTGCACCACCATCCCCAACGCGGGGCCATAACCATCGCCCTTCCTCTTCTAGAGAGCTATTTCATGGTGTTGATGATGCAACAAGAACACTCAAACAAATTCTTCACCTCGATATTGACTCTGAATGA

mRNA sequence

ATGAGTCAATTCAGTCAAAACAGGGACAAATACCGTAAACTTCATAGCGAGCCAAGGCCGGCTACCGAGTTTTATTCTGCCATGAAAACCTTGATGATTGTAGAACAGTACAGATATGAGTTCTTCACTCTGTTCAAGAATCTAGGTATGAGTCGATTTGGGGATTTTACGATTAAAGAAGACAGAGAGGAAAATCAAAATCGATTGAGTAATCAATCGGGGACAGGATTTCGCCCTGTTCCATTGGAGATTTCTTCGATTCCTGTTTGTCATCCTTCTTCCCCAAAGATTCAACCCCCTTCGACTGATTGTAACCCTAAACCGATTTCACCAACTCCAAGAAGTGATCCAATTCCGATTAATCCTGAAATTTGTGATGATTTTGATGAACATTGCTGTTATAATAAGAGTTCATCCTACCCTGAGCTTTGGGCTGGACCAACTTACTCAAATTCACCCCCTGCAAGTTCATTGCCAATGCCCAATTTCTCAATTCGAAGAAATATAATTTTGTCACTCCAATTGCCCACCGGTTCAACCGCTCAAGCAATCAGAAGAACTCAACCAATTGTGAAATCTGCACCACCATCCCCAACGCGGGGCCATAACCATCGCCCTTCCTCTTCTAGAGAGCTATTTCATGGTGTTGATGATGCAACAAGAACACTCAAACAAATTCTTCACCTCGATATTGACTCTGAATGA

Coding sequence (CDS)

ATGAGTCAATTCAGTCAAAACAGGGACAAATACCGTAAACTTCATAGCGAGCCAAGGCCGGCTACCGAGTTTTATTCTGCCATGAAAACCTTGATGATTGTAGAACAGTACAGATATGAGTTCTTCACTCTGTTCAAGAATCTAGGTATGAGTCGATTTGGGGATTTTACGATTAAAGAAGACAGAGAGGAAAATCAAAATCGATTGAGTAATCAATCGGGGACAGGATTTCGCCCTGTTCCATTGGAGATTTCTTCGATTCCTGTTTGTCATCCTTCTTCCCCAAAGATTCAACCCCCTTCGACTGATTGTAACCCTAAACCGATTTCACCAACTCCAAGAAGTGATCCAATTCCGATTAATCCTGAAATTTGTGATGATTTTGATGAACATTGCTGTTATAATAAGAGTTCATCCTACCCTGAGCTTTGGGCTGGACCAACTTACTCAAATTCACCCCCTGCAAGTTCATTGCCAATGCCCAATTTCTCAATTCGAAGAAATATAATTTTGTCACTCCAATTGCCCACCGGTTCAACCGCTCAAGCAATCAGAAGAACTCAACCAATTGTGAAATCTGCACCACCATCCCCAACGCGGGGCCATAACCATCGCCCTTCCTCTTCTAGAGAGCTATTTCATGGTGTTGATGATGCAACAAGAACACTCAAACAAATTCTTCACCTCGATATTGACTCTGAATGA

Protein sequence

MSQFSQNRDKYRKLHSEPRPATEFYSAMKTLMIVEQYRYEFFTLFKNLGMSRFGDFTIKEDREENQNRLSNQSGTGFRPVPLEISSIPVCHPSSPKIQPPSTDCNPKPISPTPRSDPIPINPEICDDFDEHCCYNKSSSYPELWAGPTYSNSPPASSLPMPNFSIRRNIILSLQLPTGSTAQAIRRTQPIVKSAPPSPTRGHNHRPSSSRELFHGVDDATRTLKQILHLDIDSE

Homology

[Close]

BLAST of CmoCh08G003330 vs. ExPASy TrEMBL
Match: A0A6J1H8U6 (uncharacterized protein LOC111461143 OS=Cucurbita moschata OX=3662 GN=LOC111461143 PE=4 SV=1)

HSP 1 Score: 421.4 bits (1082), Expect = 2.5e-114
Identity = 207/207 (100.00%), Postives = 207/207 (100.00%), Query Frame = 0


Query: 28  MKTLMIVEQYRYEFFTLFKNLGMSRFGDFTIKEDREENQNRLSNQSGTGFRPVPLEISSI 87
           MKTLMIVEQYRYEFFTLFKNLGMSRFGDFTIKEDREENQNRLSNQSGTGFRPVPLEISSI
Sbjct: 1   MKTLMIVEQYRYEFFTLFKNLGMSRFGDFTIKEDREENQNRLSNQSGTGFRPVPLEISSI 60

Query: 88  PVCHPSSPKIQPPSTDCNPKPISPTPRSDPIPINPEICDDFDEHCCYNKSSSYPELWAGP 147
           PVCHPSSPKIQPPSTDCNPKPISPTPRSDPIPINPEICDDFDEHCCYNKSSSYPELWAGP
Sbjct: 61  PVCHPSSPKIQPPSTDCNPKPISPTPRSDPIPINPEICDDFDEHCCYNKSSSYPELWAGP 120

Query: 148 TYSNSPPASSLPMPNFSIRRNIILSLQLPTGSTAQAIRRTQPIVKSAPPSPTRGHNHRPS 207
           TYSNSPPASSLPMPNFSIRRNIILSLQLPTGSTAQAIRRTQPIVKSAPPSPTRGHNHRPS
Sbjct: 121 TYSNSPPASSLPMPNFSIRRNIILSLQLPTGSTAQAIRRTQPIVKSAPPSPTRGHNHRPS 180

Query: 208 SSRELFHGVDDATRTLKQILHLDIDSE 235
           SSRELFHGVDDATRTLKQILHLDIDSE
Sbjct: 181 SSRELFHGVDDATRTLKQILHLDIDSE 207

[Close]

BLAST of CmoCh08G003330 vs. ExPASy TrEMBL
Match: A0A6J1KYV4 (uncharacterized protein LOC111497628 OS=Cucurbita maxima OX=3661 GN=LOC111497628 PE=4 SV=1)

HSP 1 Score: 360.9 bits (925), Expect = 4.0e-96
Identity = 179/185 (96.76%), Postives = 181/185 (97.84%), Query Frame = 0


Query: 50  MSRFGDFTIKEDREENQNRLSNQSGTGFRPVPLEISSIPVCHPSSPKIQPPSTDCNPKPI 109
           MSRFG+FTIKEDREENQNRLSNQSGTGFRPVPLEISSIPV  PSSPKIQPPSTDCNPKPI
Sbjct: 1   MSRFGNFTIKEDREENQNRLSNQSGTGFRPVPLEISSIPVYRPSSPKIQPPSTDCNPKPI 60

Query: 110 SPTPRSDPIPINPEICDDFDEHCCYNKSSSYPELWAGPTYSNSPPASSLPMPNFSIRRNI 169
           SPTPRSDPIPIN EICDDFDEHCCY+KSSSYPELWAGPTYSNSPPASSLPMPNFSIRRNI
Sbjct: 61  SPTPRSDPIPINSEICDDFDEHCCYSKSSSYPELWAGPTYSNSPPASSLPMPNFSIRRNI 120

Query: 170 ILSLQLPTGSTAQAIRRTQPIVKSAPPSPTRGHNHRPSSSRELFHGVDDATRTLKQILHL 229
           ILSLQLPTGSTAQAIRRTQPIVKSAPPSPTRGHNHRPSSSRELFHGVD ATRTLKQILHL
Sbjct: 121 ILSLQLPTGSTAQAIRRTQPIVKSAPPSPTRGHNHRPSSSRELFHGVDAATRTLKQILHL 180

Query: 230 DIDSE 235
           DIDSE
Sbjct: 181 DIDSE 185

[Close]

BLAST of CmoCh08G003330 vs. ExPASy TrEMBL
Match: A0A6J1D941 (uncharacterized protein LOC111018396 OS=Momordica charantia OX=3673 GN=LOC111018396 PE=4 SV=1)

HSP 1 Score: 193.7 bits (491), Expect = 8.4e-46
Identity = 123/217 (56.68%), Postives = 146/217 (67.28%), Query Frame = 0


Query: 28  MKTLMIVEQYRYEFFTLFKNLGMSRFGDFTIKEDREENQNRLSNQSGTGFRPVPLEISSI 87
           M+ L+I+EQYR EF +    L  +RFG+  IKE R + +NR S      FRP PLEISSI
Sbjct: 1   MEMLVIMEQYRDEFCSRVITLEPARFGNPPIKEARGK-KNRFS------FRPTPLEISSI 60

Query: 88  PVCHPSSPKIQPPSTDCNPKPISPTPRSDPIPINPEIC----DDFDEHCCYN-KSSSYPE 147
           PV   S       S D N  PIS T R+ PIPINP +C     D DE  CYN KS S+PE
Sbjct: 61  PVHRVS-------SADFNNPPISTTARTAPIPINPPVCVSDSIDLDEQSCYNYKSLSFPE 120

Query: 148 LWAGPTYSNSPPASSLPMPNFSIRRNIILSLQLPTGSTAQAIRRTQPIVKSAPPSPTRGH 207
           LWAGPTYSNSPPASSLP+P FSIR+   +SL+LP  S A+++ +  PIVKSAPPSPTRGH
Sbjct: 121 LWAGPTYSNSPPASSLPIPKFSIRQTRTVSLELPPDSAAESV-KIHPIVKSAPPSPTRGH 180

Query: 208 -----NHRPSSSRELFHGVDDATRTLKQILHLDIDSE 235
                NH P S+RE FHG D ATRTL++IL+L IDSE
Sbjct: 181 KNHHINHHP-STREPFHGADSATRTLRRILNLAIDSE 201

[Close]

BLAST of CmoCh08G003330 vs. ExPASy TrEMBL
Match: A0A1S3BR78 (uncharacterized protein LOC103492654 OS=Cucumis melo OX=3656 GN=LOC103492654 PE=4 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 2.4e-45
Identity = 122/216 (56.48%), Postives = 140/216 (64.81%), Query Frame = 0


Query: 23  EFYSAMKTLMIVEQYRYEFFTLFKNLGMSRFGDFTIKEDREENQNRLSNQSGTGFRPVPL 82
           EF SAM+TL+IVEQYR EF    K L  SRFG+ TIK+      NRL       FRP PL
Sbjct: 4   EFGSAMETLVIVEQYRDEFCYRVKPLESSRFGNVTIKD-----HNRLR------FRPTPL 63

Query: 83  EISSIPVCHPSSPKIQPPSTDCNPKPISPTPRSDPIPINPEIC----DDFDEHCCYNKSS 142
           EISSIPV + SSPK  PP                PIPIN +IC     DFDEHCCY K  
Sbjct: 64  EISSIPVYYFSSPKTPPPFA--------------PIPINGKICVDESIDFDEHCCY-KRL 123

Query: 143 SYPELWAGPTYSNSPPASSLPMPNFSIRRNIILSLQLPTGSTAQAIRRTQPIVKSAPPSP 202
           S+PELWAGPTYSNSPPASSLP+P FSIR N  +SL+ PT S    + +   IVKSAPPSP
Sbjct: 124 SFPELWAGPTYSNSPPASSLPIPKFSIRGNRTVSLESPTNS----VEKVHQIVKSAPPSP 183

Query: 203 TRGHNHRPSSSRELFHGVDDATRTLKQILHLDIDSE 235
           TRG+ H   SSRE  H  D ATRTL++IL+LD++SE
Sbjct: 184 TRGNTH--PSSREPCHCADSATRTLRRILNLDVNSE 187

[Close]

BLAST of CmoCh08G003330 vs. ExPASy TrEMBL
Match: A0A5D3DRH9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold111G001460 PE=4 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 2.4e-45
Identity = 122/216 (56.48%), Postives = 140/216 (64.81%), Query Frame = 0


Query: 23  EFYSAMKTLMIVEQYRYEFFTLFKNLGMSRFGDFTIKEDREENQNRLSNQSGTGFRPVPL 82
           EF SAM+TL+IVEQYR EF    K L  SRFG+ TIK+      NRL       FRP PL
Sbjct: 4   EFGSAMETLVIVEQYRDEFCYRVKPLESSRFGNVTIKD-----HNRLR------FRPTPL 63

Query: 83  EISSIPVCHPSSPKIQPPSTDCNPKPISPTPRSDPIPINPEIC----DDFDEHCCYNKSS 142
           EISSIPV + SSPK  PP                PIPIN +IC     DFDEHCCY K  
Sbjct: 64  EISSIPVYYFSSPKTPPPFA--------------PIPINGKICVNESIDFDEHCCY-KRL 123

Query: 143 SYPELWAGPTYSNSPPASSLPMPNFSIRRNIILSLQLPTGSTAQAIRRTQPIVKSAPPSP 202
           S+PELWAGPTYSNSPPASSLP+P FSIR N  +SL+ PT S    + +   IVKSAPPSP
Sbjct: 124 SFPELWAGPTYSNSPPASSLPIPKFSIRGNRTVSLESPTNS----VEKVHQIVKSAPPSP 183

Query: 203 TRGHNHRPSSSRELFHGVDDATRTLKQILHLDIDSE 235
           TRG+ H   SSRE  H  D ATRTL++IL+LD++SE
Sbjct: 184 TRGNTH--PSSREPCHCADSATRTLRRILNLDVNSE 187

[Close]

BLAST of CmoCh08G003330 vs. NCBI nr
Match: XP_022960408.1 (uncharacterized protein LOC111461143 [Cucurbita moschata])

HSP 1 Score: 421.4 bits (1082), Expect = 5.1e-114
Identity = 207/207 (100.00%), Postives = 207/207 (100.00%), Query Frame = 0


Query: 28  MKTLMIVEQYRYEFFTLFKNLGMSRFGDFTIKEDREENQNRLSNQSGTGFRPVPLEISSI 87
           MKTLMIVEQYRYEFFTLFKNLGMSRFGDFTIKEDREENQNRLSNQSGTGFRPVPLEISSI
Sbjct: 1   MKTLMIVEQYRYEFFTLFKNLGMSRFGDFTIKEDREENQNRLSNQSGTGFRPVPLEISSI 60

Query: 88  PVCHPSSPKIQPPSTDCNPKPISPTPRSDPIPINPEICDDFDEHCCYNKSSSYPELWAGP 147
           PVCHPSSPKIQPPSTDCNPKPISPTPRSDPIPINPEICDDFDEHCCYNKSSSYPELWAGP
Sbjct: 61  PVCHPSSPKIQPPSTDCNPKPISPTPRSDPIPINPEICDDFDEHCCYNKSSSYPELWAGP 120

Query: 148 TYSNSPPASSLPMPNFSIRRNIILSLQLPTGSTAQAIRRTQPIVKSAPPSPTRGHNHRPS 207
           TYSNSPPASSLPMPNFSIRRNIILSLQLPTGSTAQAIRRTQPIVKSAPPSPTRGHNHRPS
Sbjct: 121 TYSNSPPASSLPMPNFSIRRNIILSLQLPTGSTAQAIRRTQPIVKSAPPSPTRGHNHRPS 180

Query: 208 SSRELFHGVDDATRTLKQILHLDIDSE 235
           SSRELFHGVDDATRTLKQILHLDIDSE
Sbjct: 181 SSRELFHGVDDATRTLKQILHLDIDSE 207

[Close]

BLAST of CmoCh08G003330 vs. NCBI nr
Match: XP_023514559.1 (uncharacterized protein LOC111778815 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 418.3 bits (1074), Expect = 4.3e-113
Identity = 206/207 (99.52%), Postives = 206/207 (99.52%), Query Frame = 0


Query: 28  MKTLMIVEQYRYEFFTLFKNLGMSRFGDFTIKEDREENQNRLSNQSGTGFRPVPLEISSI 87
           MKTLMIVEQYRYEFFTLFKNLGMSRFGDFTIKEDREENQNRLSNQSGTGFRPVPLEISSI
Sbjct: 1   MKTLMIVEQYRYEFFTLFKNLGMSRFGDFTIKEDREENQNRLSNQSGTGFRPVPLEISSI 60

Query: 88  PVCHPSSPKIQPPSTDCNPKPISPTPRSDPIPINPEICDDFDEHCCYNKSSSYPELWAGP 147
           PVC PSSPKIQPPSTDCNPKPISPTPRSDPIPINPEICDDFDEHCCYNKSSSYPELWAGP
Sbjct: 61  PVCRPSSPKIQPPSTDCNPKPISPTPRSDPIPINPEICDDFDEHCCYNKSSSYPELWAGP 120

Query: 148 TYSNSPPASSLPMPNFSIRRNIILSLQLPTGSTAQAIRRTQPIVKSAPPSPTRGHNHRPS 207
           TYSNSPPASSLPMPNFSIRRNIILSLQLPTGSTAQAIRRTQPIVKSAPPSPTRGHNHRPS
Sbjct: 121 TYSNSPPASSLPMPNFSIRRNIILSLQLPTGSTAQAIRRTQPIVKSAPPSPTRGHNHRPS 180

Query: 208 SSRELFHGVDDATRTLKQILHLDIDSE 235
           SSRELFHGVDDATRTLKQILHLDIDSE
Sbjct: 181 SSRELFHGVDDATRTLKQILHLDIDSE 207

[Close]

BLAST of CmoCh08G003330 vs. NCBI nr
Match: KAG6593108.1 (hypothetical protein SDJN03_12584, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 412.9 bits (1060), Expect = 1.8e-111
Identity = 203/207 (98.07%), Postives = 205/207 (99.03%), Query Frame = 0


Query: 28  MKTLMIVEQYRYEFFTLFKNLGMSRFGDFTIKEDREENQNRLSNQSGTGFRPVPLEISSI 87
           MKTLMIVEQYRYEFFTLFKNLGMSR G+FTIKEDREENQNRLSNQSGTGFRPVPLE+SSI
Sbjct: 1   MKTLMIVEQYRYEFFTLFKNLGMSRLGNFTIKEDREENQNRLSNQSGTGFRPVPLEMSSI 60

Query: 88  PVCHPSSPKIQPPSTDCNPKPISPTPRSDPIPINPEICDDFDEHCCYNKSSSYPELWAGP 147
           PVC PSSPKIQPPSTDCNPKPISPTPRSDPIPINPEICDDFDEHCCYNKSSSYPELWAGP
Sbjct: 61  PVCRPSSPKIQPPSTDCNPKPISPTPRSDPIPINPEICDDFDEHCCYNKSSSYPELWAGP 120

Query: 148 TYSNSPPASSLPMPNFSIRRNIILSLQLPTGSTAQAIRRTQPIVKSAPPSPTRGHNHRPS 207
           TYSNSPPASSLPMPNFSIRRNIILSLQLPTGSTAQAIRRTQPIVKSAPPSPTRGHNHRPS
Sbjct: 121 TYSNSPPASSLPMPNFSIRRNIILSLQLPTGSTAQAIRRTQPIVKSAPPSPTRGHNHRPS 180

Query: 208 SSRELFHGVDDATRTLKQILHLDIDSE 235
           SSRELFHGVDDATRTLKQILHLDIDSE
Sbjct: 181 SSRELFHGVDDATRTLKQILHLDIDSE 207

[Close]

BLAST of CmoCh08G003330 vs. NCBI nr
Match: KAG7025517.1 (hypothetical protein SDJN02_12013, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 411.0 bits (1055), Expect = 6.9e-111
Identity = 202/207 (97.58%), Postives = 205/207 (99.03%), Query Frame = 0


Query: 28  MKTLMIVEQYRYEFFTLFKNLGMSRFGDFTIKEDREENQNRLSNQSGTGFRPVPLEISSI 87
           MKTLMIVEQYRYEFFTLFKNLGMSR G+FTIKEDREENQNRLSNQSGTGFRPVPLE+SSI
Sbjct: 1   MKTLMIVEQYRYEFFTLFKNLGMSRLGNFTIKEDREENQNRLSNQSGTGFRPVPLEMSSI 60

Query: 88  PVCHPSSPKIQPPSTDCNPKPISPTPRSDPIPINPEICDDFDEHCCYNKSSSYPELWAGP 147
           PVC PSSPKIQPPSTDCNPKPISPTPRSDPIPI+PEICDDFDEHCCYNKSSSYPELWAGP
Sbjct: 61  PVCRPSSPKIQPPSTDCNPKPISPTPRSDPIPISPEICDDFDEHCCYNKSSSYPELWAGP 120

Query: 148 TYSNSPPASSLPMPNFSIRRNIILSLQLPTGSTAQAIRRTQPIVKSAPPSPTRGHNHRPS 207
           TYSNSPPASSLPMPNFSIRRNIILSLQLPTGSTAQAIRRTQPIVKSAPPSPTRGHNHRPS
Sbjct: 121 TYSNSPPASSLPMPNFSIRRNIILSLQLPTGSTAQAIRRTQPIVKSAPPSPTRGHNHRPS 180

Query: 208 SSRELFHGVDDATRTLKQILHLDIDSE 235
           SSRELFHGVDDATRTLKQILHLDIDSE
Sbjct: 181 SSRELFHGVDDATRTLKQILHLDIDSE 207

[Close]

BLAST of CmoCh08G003330 vs. NCBI nr
Match: XP_023004233.1 (uncharacterized protein LOC111497628 [Cucurbita maxima])

HSP 1 Score: 360.9 bits (925), Expect = 8.2e-96
Identity = 179/185 (96.76%), Postives = 181/185 (97.84%), Query Frame = 0


Query: 50  MSRFGDFTIKEDREENQNRLSNQSGTGFRPVPLEISSIPVCHPSSPKIQPPSTDCNPKPI 109
           MSRFG+FTIKEDREENQNRLSNQSGTGFRPVPLEISSIPV  PSSPKIQPPSTDCNPKPI
Sbjct: 1   MSRFGNFTIKEDREENQNRLSNQSGTGFRPVPLEISSIPVYRPSSPKIQPPSTDCNPKPI 60

Query: 110 SPTPRSDPIPINPEICDDFDEHCCYNKSSSYPELWAGPTYSNSPPASSLPMPNFSIRRNI 169
           SPTPRSDPIPIN EICDDFDEHCCY+KSSSYPELWAGPTYSNSPPASSLPMPNFSIRRNI
Sbjct: 61  SPTPRSDPIPINSEICDDFDEHCCYSKSSSYPELWAGPTYSNSPPASSLPMPNFSIRRNI 120

Query: 170 ILSLQLPTGSTAQAIRRTQPIVKSAPPSPTRGHNHRPSSSRELFHGVDDATRTLKQILHL 229
           ILSLQLPTGSTAQAIRRTQPIVKSAPPSPTRGHNHRPSSSRELFHGVD ATRTLKQILHL
Sbjct: 121 ILSLQLPTGSTAQAIRRTQPIVKSAPPSPTRGHNHRPSSSRELFHGVDAATRTLKQILHL 180

Query: 230 DIDSE 235
           DIDSE
Sbjct: 181 DIDSE 185

[Close]

BLAST of CmoCh08G003330 vs. TAIR 10
Match: AT4G02715.1 (unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 95.9 bits (237), Expect = 4.6e-20
Identity = 75/215 (34.88%), Postives = 112/215 (52.09%), Query Frame = 0


Query: 28  MKTLMIVEQYRYEFFTLFKNLGMSRFGDFTIKEDREENQNRLSNQSGTGFRPVPLEISSI 87
           M+TL++  ++R +++   K+LG  RF     K  R+ N      QSG G  P P   SS 
Sbjct: 1   METLIVAVEHRDQYYGK-KSLGHDRFRSAPSKTFRQINCRTF--QSGVGLLPRPKRTSST 60

Query: 88  PVCHPSSPKIQPPSTDCNPKPISPTP-----RSDPIPI----NPEICDDFDEHCCYNKSS 147
           P+   +  ++Q P +  +  P+   P     R+ PIPI      +I     E     +S 
Sbjct: 61  PLTKGALSQVQSPRSPKSVLPVFHHPSVDSGRTSPIPIANCRGSQIRRCSSEFVDKRRSL 120

Query: 148 SYPELWAGPTYSNSPPASSLPMPNFSIRRNIILSLQLPTGSTAQAIRRTQPIVKSAPPSP 207
           SY ELWAGPTYSNSPP +S+P+P FS+++   +SL  P   +A  IR    + KSAP SP
Sbjct: 121 SYSELWAGPTYSNSPPPASVPIPKFSLQQKRTVSLTFPAPDSAVDIRE---VAKSAPVSP 180

Query: 208 TRGHNHRPSSSRELFHGVDDATRTLKQILHLDIDS 234
           T       SS    F     AT TL+++L+L++++
Sbjct: 181 T-------SSGDNPFRSTVSATMTLRRMLNLELET 202

The following BLAST results are available for this feature:

BLAST of CmoCh08G003330 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh08G003330 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1H8U6	2.5e-114	100.00	uncharacterized protein LOC111461143 OS=Cucurbita moschata OX=3662 GN=LOC1114611...	[more]
A0A6J1KYV4	4.0e-96	96.76	uncharacterized protein LOC111497628 OS=Cucurbita maxima OX=3661 GN=LOC111497628...	[more]
A0A6J1D941	8.4e-46	56.68	uncharacterized protein LOC111018396 OS=Momordica charantia OX=3673 GN=LOC111018...	[more]
A0A1S3BR78	2.4e-45	56.48	uncharacterized protein LOC103492654 OS=Cucumis melo OX=3656 GN=LOC103492654 PE=...	[more]
A0A5D3DRH9	2.4e-45	56.48	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of CmoCh08G003330 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022960408.1	5.1e-114	100.00	uncharacterized protein LOC111461143 [Cucurbita moschata]	[more]
XP_023514559.1	4.3e-113	99.52	uncharacterized protein LOC111778815 [Cucurbita pepo subsp. pepo]	[more]
KAG6593108.1	1.8e-111	98.07	hypothetical protein SDJN03_12584, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7025517.1	6.9e-111	97.58	hypothetical protein SDJN02_12013, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_023004233.1	8.2e-96	96.76	uncharacterized protein LOC111497628 [Cucurbita maxima]	[more]

BLAST of CmoCh08G003330 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G02715.1	4.6e-20	34.88	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae -...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF15365	PNRC	coord: 144..163 e-value: 2.6E-6 score: 27.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 191..211
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 93..117
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 89..117
None	No IPR available	PANTHER	PTHR35306:SF1	BNAA03G57290D PROTEIN	coord: 28..233
None	No IPR available	PANTHER	PTHR35306	BNAA03G57290D PROTEIN	coord: 28..233

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh08G003330.1	CmoCh08G003330.1	mRNA