CmoCh08G003300 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh08G003300
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionUnknown protein
LocationCmo_Chr08: 2053073 .. 2055146 (-)
RNA-Seq ExpressionCmoCh08G003300
SyntenyCmoCh08G003300
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAATCAAGCCTCATGCGCGCTGGAGTGTAAGTATATTCAAGGTTTTGTGATAATTTAACACTTCAGTTACTTTTCCATAGAGTTTTGGTGCTTTTAGATTCCTAGTCGTAATGGAAGGAAATTTTGGTTAGTGTATGTGTCCGTCTTGAATTTGTTCATCTGTACGAGTGAAGCATGTTAGGAACAGCTTGTACTGAATTGGACTGGAATTACAGAATCTCAATTTTGGCTTTGATATCTATTATTTTGATTAGAAAGAAGAGAGGGGTGGAGACGTGACGATAGTAACAGACACGAACGTCTCCGAACCTCGTTCGTGACTCTACATCATATGCGACTATATGAAGCTTTTAGGCAGGGTGGTTTGTTTTTGCTGTGTTTTTTTGGAAGGCTTCAATGATGGTTCCTCTTTACTGCTCAAAATTTATCTTCTAGCAAATGTGGACGTGTCTGTGATCGGAGTGGGAGCGAGAGCGAAAGTAGGGTTAGAGGGTTAGAGCGAAAGTAGAACAATGATAATGATATGAACCTAACAAAATTGAGGAGTACAGTTTCTTGTAAATATTTAACACGTCTAGTCTCAAGGTGAGCTTTTTGATCAATTAAATAAATAAAAAATCGGACTAAATTAGTCATCTCGATGTTTAGTTTTCGATAAAAAAATGGAGTGTTATAATTTTTGTAATTCAATTTGAGATGCATATAACTCAATTAGTACTTTATCAAAATAACTCAACTAGTATACCCTCGTTCGTTCATCTTCGGCACAAGAGCGCTCGATCAGTGAGCTATTACGCAGTCTTTCAAGGGTGGCTGCTTCTAGGCAAACCTTCTGGCTGTCTCTGCACCCCTACCTCCTTTATCACTGAGCGGTCACTTCGGGGCCTTAGCTGGTGATCCGGGCTGTTTCCCTCTTGACCATGAAGCTGATCGAAAATAGTGATTCAATTAGTATACTCTCGAGCACGTAGCTTAGTTAGCATAAGTGTGAAATGCACGCAGCTCAATTCTGTTCGAGTGGTCAACTTTACCCCCACACAAATTTTTTTTTGAATGGACAAAATAAAAAAATGGGAGCAAAAATGGAATAACCATCTTAAAATTGGAGAAAAGATGAAATTTTTATAAAAATGTAATGAAATTTTACCCAAGTAAGAATAGGGTTGTCTTCTTCAAGGCTTCAACAGGCGAAGCTTTAAAAGCTTAATACCAGTACGGCTGTAGGCTGCAACAGAGGCTCAATCGGGAGCTCGTCAAAGGCTTGTCGAAGTGGAACAAGCCGCCATTATTTTGCTTAGCTTCCTATTTTTCCCCCTGTAAGTATGGTTTTAGCGCCCTCTCCAATTTTCTTTCATGTCGACCGCCTCTCTTAGAATGGTTGATGCTGGAATCCGTCTTCATCTGCTTTGATTTTGGACCTCATTGCCGCGTTATTTACATGCGTTCATGATTATATTTCAGAATATTAGGCCTTCTTTTTATGTATCCCTTAATTTGTGTAGCATTCTGGTTGATATATATGAATTTTGGTTTGTTCGTGGAGCGGTTAATCGTGAGACTCAGCCACTGCTTTTCGGGTTTTGGCTTTACACTTGCAATACAAAATTTTCGGGTTTTTACACGGTGTTATGATTCGGCTTAGTTTAGTTTTGTATTTGTTTGAAGTTTGAACTCACTTATGTGAAAAAGAAAAAGAGTTTAAACTATTTTTCTTACTTCTCTCGTAATCGCAGTCTATTTTTCTTCCTGCTATCTGACAAGAATTTCCATTTTTCTTATGAAAATGAAACTTGTATTAACTTTTAAGAGTTTAAACTATTGAACCGGTGCTTTGAGATTGAAGAAAACTTGATACGAAGTGTATTTTGATAGTAATGTTATTATGACAAAATAGGAACAAAAAGTGCTTAATTTGTAGTTGTCATACTCATTTGCAAATTAGAATAAAATGGTCTGTTCTTGTTCTGGACTTTTACTTCCAAGCATTGATGAACTTAGTCTTGCTCTTGCATGCCGCAGATGGGAAGAATTGATGCAAATGTCGGTAAACCTATCCGTTGCAAAGTCTAA

mRNA sequence

ATGGAAATCAAGCCTCATGCGCGCTGGAGTGTAAGCTTCAATGATGGTTCCTCTTTACTGCTCAAAATTTATCTTCTAGCAAATGTGGACGTGTCTGTGATCGGAGTGGGAGCGAGAGCGAAAGTAGGCATTCTGGTTGATATATATGAATTTTGGTTTGTTCGTGGAGCGGTTAATCGTGAGACTCAGCCACTGCTTTTCGGGTTTTGGCTTTACACTTGCAATACAAAATTTTCGGGTTTTTACACGATGGGAAGAATTGATGCAAATGTCGGTAAACCTATCCGTTGCAAAGTCTAA

Coding sequence (CDS)

ATGGAAATCAAGCCTCATGCGCGCTGGAGTGTAAGCTTCAATGATGGTTCCTCTTTACTGCTCAAAATTTATCTTCTAGCAAATGTGGACGTGTCTGTGATCGGAGTGGGAGCGAGAGCGAAAGTAGGCATTCTGGTTGATATATATGAATTTTGGTTTGTTCGTGGAGCGGTTAATCGTGAGACTCAGCCACTGCTTTTCGGGTTTTGGCTTTACACTTGCAATACAAAATTTTCGGGTTTTTACACGATGGGAAGAATTGATGCAAATGTCGGTAAACCTATCCGTTGCAAAGTCTAA

Protein sequence

MEIKPHARWSVSFNDGSSLLLKIYLLANVDVSVIGVGARAKVGILVDIYEFWFVRGAVNRETQPLLFGFWLYTCNTKFSGFYTMGRIDANVGKPIRCKV
Homology
BLAST of CmoCh08G003300 vs. NCBI nr
Match: KAG6593106.1 (Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 54.3 bits (129), Expect = 6.9e-04
Identity = 27/29 (93.10%), Postives = 28/29 (96.55%), Query Frame = 0

Query: 13  FNDGSSLLLKIYLLANVDVSVIGVGARAK 42
           FNDGSSLLLKI+LLANVDVSVIGVGAR K
Sbjct: 534 FNDGSSLLLKIHLLANVDVSVIGVGARTK 562

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6593106.16.9e-0493.10Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita a... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh08G003300.1CmoCh08G003300.1mRNA