CmoCh08G002330 (gene) Cucurbita moschata (Rifu) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TACCGGAGTTCGTCGCCTCCGATGAACAGAGATAAGCATCTGCCGGAGGTGGAAACAGAGACGACGGGGGAGGATGACGAGGAACCAAGTGTTTTGCTACGGAGGAAGAAATTTCGTCGACGCGCTCAGTCTAGCTTCTCATCCACTGACAGCGACGAAACGTTCTCCGAGTATTCCGAGGGACGTAAATTCGTCGTTCGAGATGAACAACAACAAGAACAATGTAAGTTTCGGCAAATTATTCATCGCTGTTTGGATTTCTTTGTTCTTCTCCCGTTCTTGAAATGTACTTTAGTCGCCATTTGAAACTGGAATTTGAGGCTTAGAGGCGTGGAATCGATCGCCATTGTTGCGCTACTGTTATCACGACAGGAGGCCAAAATGAAGCTTCATTAGGCGAAAACACAGTTAAATTTATTCCTTCAAATACTTTCTAAATTCGTGGATCTACTCGATTTCCTTTCTTTTAATTAACCAATTCTCATTCCGTAAATCTTGGCGAAGAAGACGAAGACTACGTGTTCGACGAAGGGAAAGTGATCGCCACAGTTCGTTTTGTTTTGTTCTGATTTGTTAGGTTGCTTAATTAATAATTAATTCTCTTAATTACAGTATTAACTTTACGAAAACTTTTCTGCAGAACAAAATAAGTAACACGTCGTCATCGTTAATAATAATCAATCATTAATGTTCTTTAATTTTCTTGTATGTTTTAGCAACATATTCAGAACTCAGAGATACCGACAATTTAGAACTGGGTCCCGTCCTATGTCAAAATCCTCCTGCAATTTGTTCTTTCTGCTAGTAACTTGCAGCAAGCGTAATTGGGTTCTTTAGACTAACCAGAGCTCTTGAACGTTTAGGATTTGAATTTTTACTGTATGGATTCTTTCCCTAGGATAGGAGTTGGATTCTGTAACCAATCAAGAACAGAACCCTCAGTCAATTTTATCCACCCAAACAAATTGCAGGAGCCTTTTAATTCTGTCAATTATGCAACTGTTGAATGATGGGAAATTTGTTTTTCTTGCCATTGATCTATGGGAAGAACTTGAATGAAAAGCTCTGCTGAAGTTATGTGATTCTTATTATATTTTTGGTACCAAATTTGGGTATTCATTTGGAAATTCGATGTTTCCTTCCTGTTTTATGATTTCTTATTGTAACTTCAGGTACTGGATGCTCTATTGGATCTTCTCGGTTGAAAGTCGATGGTGATCGTCATGCTTTTTTTGAAGTAAGCCCCACTGATGAGATTGAAGCTATCAGCACAAGGAAAACAGGCTCGCTAAATGGCACTGGGATCAAGTTCCAGCATGATCAGATCCCTTCAGCTGTTTCTAATCAACCATCCAAGGGGGAAATTGAGGAGCAGGCTTCATATAAAAGAGTGGAGTTGAGGTCAGAAAATGGAACTCAAGTGGCGGATTTATATCTTGGAAGGATATATGAGAAACCCAGCTCGCATAATTTCTACTGTCCTAACTGTCACGCTTGTGTCACGAAGGTGATTATACGTGAAAGGGAATGGGTAAATAATACTGTTTCTAAACCAATTCCTTCTCCGGTTGATAGATTCAGATGCACCTCTTGCCTCAGTTTCCTCGCCCCTATAGGTGCGTTTCTCATTCTTATCTGATATATGTTGTATGGTTCAAACTGTACTGCAGCAGTTGACTCCTTTAAAATATGTGAGATCCCACGTCCCTCGGAGAGGGGAACAAAACATTATTTATAAGAGTGTAGAAACATCTTTCTAACAAACGCGTTTTAAAAACCTTAAGAGAAAACTCGGAAGAAAAAGTCCAAAGAGGACAATATCTGCTAGCGGTGAGTTTGGGTCATTACAAATGATATTAGAGCTAGACCTCAGGACGTGTGCTAGCGAAGATGTTGAGCCCCAAAGGGGTTGGACACTGAGCGATGTGCCAGTAAGGACGCTGAACCCCGAAAGAGAGTGCACATCAGGGGATGTGCCAACGAGGATGTTGAGCCTCGAAGGGGGGTAAATTGTGAGATCTCACATCGGTTGGAGAGGGGAACAAAACATTCTTTATAAGGGTGTGGAAACATCTTCCTAACAGACATGTTTTTGTCTGTTTTAAAAAATTTTGAAGGAAAGTTCGAAAGAGAAAGCTCAAAGAGGACAATATTTGCTAGCGGTGGGTTTGGGCCGTTTCAAAATAATTCTCGATAGGTGTGAAAACTGTTGCCATCAATGGTTTTGCCACTTACTGATATTGAAAGAAAAGCGTCTCCCTTAAGGATGCCGGTGGCACATGCTGATTGAGGCTTAAAATAAAAAACACACTTTAGCTTTTGTGTTAAGATTAATCATCACTGTGAAGGTTATGCGGGAGTTGACTTGGAATCATGTAATTGTTTCATCTCTGTTTGCAATGTTTTCATAAATAGAGGGAAGGGACCTTTTGAAAATTGTCTTGGCCTTTGGAAACAGTCAAGGATAAAGGGTAGTTTATCATATATGTTTGTGTATGTTGTCAAATGGATCTTACCAGGATTACTGAGTTAAGCTATTTTTTCAATGGGCAGGTGCATGGCTCTTTCCTAAATTGGCTACTCCTGACCGTGAGGAAGAAGTTTTACCCGGACAAGGTATTTGATTTTGTACATGCTTTTGGTGTTTTATGTCTTTTTTTTTTAAACTTTTGAAGATTATCGTAATCGACATGAACTAAGATGCAAATTAGAAAGATTGATATTTCCAATGATACTTGAGCATGGAGAATAAATCTCATGATCCTCTTCATTCATCCATCTAATTTCTCTCCATTCTTAGTTTCCTTCTGGGAAATCAAAGCAGAAGAAGAAAGATCTTTCATCATTTATTTTCACAGCTACGCTTCTGATCCCTTTCCCAAAAAGGATAGAACATGCGTGGCTATTTGAAATTGATTCTTTGCATGTGAGGAAATTACTTTCTGCTGTCTATATAATGTTGAAGCATAGATTTATGAGGATATATGGTTGGAGGAATATCATACCCGTAGCAATAAGTTGGATGATGAAACTCCCACCTCAGCTAGTTTAGGGAATGATCATGGGTTTATAATCAAATAATATTCTCTCTATTGGTACGAGGGCCTTTTGGAAAAACCCAAAGTAAAGCCATGAGAGCTTATGCTCAAATTGGACAATATCATACCGTTGTAGAGAGTCAGGTTCATCTAACATGGTGTCAGAGCTATGCTCTAAACTTAGTCATGTCAATAGATTGGTAAATTCTCAACTGTCGAACAAAAAACTCCAAAAGAAAAAGAGTCGAGCCTTGATTAAGGGGAGGCATACTTTGTTCGAGGGGAGGTGTTGGATGATGAAAGTCCCACGTTGGCTAATTTAGGGAATGATCATGAGTTATAATCAAAGAAAACTCTCTCCATTGGTATGAGGCAATATCATACCATAGTGGAGAGTCGTGTTCATCTAACAAGATTATGACATCAAGTCAAAGCACGCACTCTCATGGTCTTTTCCTACTAAATATGCGCGCAGGAAATAACGCTGCAAGCATAGGGATCAGAGAAAGGGAGACATTTCAAGTGTTGCAGGAAACAAGAGATCATCAAAGAAGTCAAGTTGGTAGAGACACTTCCAGCGTTCCCGATCAGTCAGTTCATTGTGCAGTAACTGATAAAGTTGAAGGTGATCATGCTGTATCTAATTCAACGCCAACTCATTCTTCACGTAACACAACAATTGCCGATGAAGGAGTGAATATCAAACAAGGTAGAGGCAAAGTTGGAGTGAATATCAAACAAGGTAGAGGCAAAGTTAGAGTGAATATCAAACAAGGTAGAGGCAAAGTTTTAATAATTTATATTTGTTGAAATTAACAGAGATTTACTCGAGTTAATATTAATAGAGATTTATTAGTTGAAACAGGACGTGTGGTGGATAGAGGAGTAGAAGCTGAACCAAGTAGGTTTAACAGGTGGGAAATTGTGAAAAGTATAGTGTATGGTGGTTTATCTGAATCAATTACAAGCCTCGGCATTATGACATCTGCAGCGAGTGCCAATACTGCAATAGGTTATTATTTACTACTTTTTTCCATCCTGCTTATAGCATCTAAACTTCATTTGTATAAGAAACATGAACTTGAGTTGTACCATATATCTAGAACAGCATTTTTTAAACATTTTTGGATCTTCAAGAGATGCTAGAGTACGGACATCTCAAGTTACACCATAATATGGAACAGCATCTGTCTTTGAAACATGATATATCCTGGTTTTTTTTTACCTAAACTAAGTTGTGTCAAAATATTAATCTATTTTCACGTTCTTTTTGCAGGCAACATTATAGTTTTGGCATTGGCAAATCTGATTAGAGGGCTTTTTATCCTTGGACATAATGTAAGTAACTGACTTTCTGATAAACCGCAGAGATGAATGTTTATTTAATTTAGACCGATTACTAAAAGAAGTAGATGGTAGAGGAGATAGTGTGCGGGAGAATTGTTAAACTTTCTTACTAAATGGTTTCATCTCAAGACTCTTCGCGCATTTATATCGTGTCACGGTAGTATGTTGAGAAAGACTGTTTATGATTTGGCTTGTGTGATGGTAACACGAGGCACATTCGAGTTGTATTGATTACCTACTTTTTGGTCTCGTCGTATCTTTATTACTTTGTTCAAAATTCCATTACATTTTTGTTTGTTGAATCATAAGCTGTCTCTCATTAAACATACACAATTTTTCAGTTGAGAGGACTCAAGACCGAGCAGTTCAGAAGGACATCTCATGAACCAGTAGACCAATACGAAGTAGTACTGGGAAACCGAGAGAATTACGTTCTACATTGCACGCTTGCCATCATCTCATTCATACTCTTTGGCTTAGTCCCCACTCTGGTTTACGTTTTAACATTCACCAAGAGCAATAACAAGGATTTCAAGCTTGCAGCAGCGGTAGGAGCTTCTTTTTTATGCATCATATTGCTTGCTATTGGGAAGGCTTCCATTCAGAGACCAAAAAATTGGGATGCATACGCCAAAACAGTAGCGACTTACATCGTTATAGCAGCCTGGGCCGGAAGCTTCTCATACATGGCTGGGGATCTACTCGACAAGTTCATCAAGAAATACAATGATTGGTTTGAGCGAAGCCGCTCTGCATTCAGGCTCAATCTGCCTCTGCCTGAGATGAGTTTGGCGGAACCAGCATGGGGATCCTTGTGAGGTAGCTCCAAATATGAAGTTAGAACATTTTGTTATTTTCAACTACTTTCATTGTTGACAGAAACGCACTCAAAATCTCCAATTAATTCACTTTTTTTTGCAAGGAAGCCAAATGGATTGCATTGACTTCCTGTTTACAAAAAGGGAATAACAAATTCCAG TACCGGAGTTCGTCGCCTCCGATGAACAGAGATAAGCATCTGCCGGAGGTGGAAACAGAGACGACGGGGGAGGATGACGAGGAACCAAGTGTTTTGCTACGGAGGAAGAAATTTCGTCGACGCGCTCAGTCTAGCTTCTCATCCACTGACAGCGACGAAACGTTCTCCGAGTATTCCGAGGGACGTAAATTCGTCGTTCGAGATGAACAACAACAAGAACAATAACAAAATAATAACTTGCAGCAAGCGATAGGAGTTGGATTCTGTACTGGATGCTCTATTGGATCTTCTCGGTTGAAAGTCGATGGTGATCGTCATGCTTTTTTTGAAGTAAGCCCCACTGATGAGATTGAAGCTATCAGCACAAGGAAAACAGGCTCGCTAAATGGCACTGGGATCAAGTTCCAGCATGATCAGATCCCTTCAGCTGTTTCTAATCAACCATCCAAGGGGGAAATTGAGGAGCAGGCTTCATATAAAAGAGTGGAGTTGAGGTCAGAAAATGGAACTCAAGTGGCGGATTTATATCTTGGAAGGATATATGAGAAACCCAGCTCGCATAATTTCTACTGTCCTAACTGTCACGCTTGTGTCACGAAGGTGATTATACGTGAAAGGGAATGGGTAAATAATACTGTTTCTAAACCAATTCCTTCTCCGGTTGATAGATTCAGATGCACCTCTTGCCTCAGTTTCCTCGCCCCTATAGGTGCATGGCTCTTTCCTAAATTGGCTACTCCTGACCGTGAGGAAGAAGTTTTACCCGGACAAGGAAATAACGCTGCAAGCATAGGGATCAGAGAAAGGGAGACATTTCAAGTGTTGCAGGAAACAAGAGATCATCAAAGAAGTCAAGTTGGTAGAGACACTTCCAGCGTTCCCGATCAGTCAGTTCATTGTGCAGTAACTGATAAAGTTGAAGGTGATCATGCTGTATCTAATTCAACGCCAACTCATTCTTCACGTAACACAACAATTGCCGATGAAGGAGTGAATATCAAACAAGGTAGAGGCAAAGTTGGAGTGAATATCAAACAAGGTAGAGGCAAAGTTAGAGTGAATATCAAACAAGGACGTGTGGTGGATAGAGGAGTAGAAGCTGAACCAAGTAGGTTTAACAGGTGGGAAATTGTGAAAAGTATAGTGTATGGTGGTTTATCTGAATCAATTACAAGCCTCGGCATTATGACATCTGCAGCGAGTGCCAATACTGCAATAGGCAACATTATAGTTTTGGCATTGGCAAATCTGATTAGAGGGCTTTTTATCCTTGGACATAATTTGAGAGGACTCAAGACCGAGCAGTTCAGAAGGACATCTCATGAACCAGTAGACCAATACGAAGTAGTACTGGGAAACCGAGAGAATTACGTTCTACATTGCACGCTTGCCATCATCTCATTCATACTCTTTGGCTTAGTCCCCACTCTGGTTTACGTTTTAACATTCACCAAGAGCAATAACAAGGATTTCAAGCTTGCAGCAGCGGTAGGAGCTTCTTTTTTATGCATCATATTGCTTGCTATTGGGAAGGCTTCCATTCAGAGACCAAAAAATTGGGATGCATACGCCAAAACAGTAGCGACTTACATCGTTATAGCAGCCTGGGCCGGAAGCTTCTCATACATGGCTGGGGATCTACTCGACAAGTTCATCAAGAAATACAATGATTGGTTTGAGCGAAGCCGCTCTGCATTCAGGCTCAATCTGCCTCTGCCTGAGATGAGTTTGGCGGAACCAGCATGGGGATCCTTGTGAGGTAGCTCCAAATATGAAGTTAGAACATTTTGTTATTTTCAACTACTTTCATTGTTGACAGAAACGCACTCAAAATCTCCAATTAATTCACTTTTTTTTGCAAGGAAGCCAAATGGATTGCATTGACTTCCTGTTTACAAAAAGGGAATAACAAATTCCAG ATGACATCTGCAGCGAGTGCCAATACTGCAATAGGCAACATTATAGTTTTGGCATTGGCAAATCTGATTAGAGGGCTTTTTATCCTTGGACATAATTTGAGAGGACTCAAGACCGAGCAGTTCAGAAGGACATCTCATGAACCAGTAGACCAATACGAAGTAGTACTGGGAAACCGAGAGAATTACGTTCTACATTGCACGCTTGCCATCATCTCATTCATACTCTTTGGCTTAGTCCCCACTCTGGTTTACGTTTTAACATTCACCAAGAGCAATAACAAGGATTTCAAGCTTGCAGCAGCGGTAGGAGCTTCTTTTTTATGCATCATATTGCTTGCTATTGGGAAGGCTTCCATTCAGAGACCAAAAAATTGGGATGCATACGCCAAAACAGTAGCGACTTACATCGTTATAGCAGCCTGGGCCGGAAGCTTCTCATACATGGCTGGGGATCTACTCGACAAGTTCATCAAGAAATACAATGATTGGTTTGAGCGAAGCCGCTCTGCATTCAGGCTCAATCTGCCTCTGCCTGAGATGAGTTTGGCGGAACCAGCATGGGGATCCTTGTGA MTSAASANTAIGNIIVLALANLIRGLFILGHNLRGLKTEQFRRTSHEPVDQYEVVLGNRENYVLHCTLAIISFILFGLVPTLVYVLTFTKSNNKDFKLAAAVGASFLCIILLAIGKASIQRPKNWDAYAKTVATYIVIAAWAGSFSYMAGDLLDKFIKKYNDWFERSRSAFRLNLPLPEMSLAEPAWGSL Homology
BLAST of CmoCh08G002330 vs. ExPASy Swiss-Prot
Match: Q8LPT3 (Membrane protein of ER body-like protein OS=Arabidopsis thaliana OX=3702 GN=MEBL PE=2 SV=1) HSP 1 Score: 126.3 bits (316), Expect = 3.6e-28 Identity = 69/178 (38.76%), Postives = 115/178 (64.61%), Query Frame = 0
BLAST of CmoCh08G002330 vs. ExPASy Swiss-Prot
Match: F4KFS7 (Membrane protein of ER body 2 OS=Arabidopsis thaliana OX=3702 GN=MEB2 PE=1 SV=1) HSP 1 Score: 100.9 bits (250), Expect = 1.6e-20 Identity = 57/163 (34.97%), Postives = 97/163 (59.51%), Query Frame = 0
BLAST of CmoCh08G002330 vs. ExPASy Swiss-Prot
Match: Q8W4P8 (Membrane protein of ER body 1 OS=Arabidopsis thaliana OX=3702 GN=MEB1 PE=1 SV=1) HSP 1 Score: 99.8 bits (247), Expect = 3.6e-20 Identity = 67/182 (36.81%), Postives = 102/182 (56.04%), Query Frame = 0
BLAST of CmoCh08G002330 vs. ExPASy TrEMBL
Match: A0A6J1H9P4 (uncharacterized protein LOC111460890 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111460890 PE=3 SV=1) HSP 1 Score: 374.4 bits (960), Expect = 2.8e-100 Identity = 190/190 (100.00%), Postives = 190/190 (100.00%), Query Frame = 0
BLAST of CmoCh08G002330 vs. ExPASy TrEMBL
Match: A0A6J1H7W6 (uncharacterized protein LOC111460890 isoform X5 OS=Cucurbita moschata OX=3662 GN=LOC111460890 PE=3 SV=1) HSP 1 Score: 374.4 bits (960), Expect = 2.8e-100 Identity = 190/190 (100.00%), Postives = 190/190 (100.00%), Query Frame = 0
BLAST of CmoCh08G002330 vs. ExPASy TrEMBL
Match: A0A6J1H657 (uncharacterized protein LOC111460890 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111460890 PE=3 SV=1) HSP 1 Score: 374.4 bits (960), Expect = 2.8e-100 Identity = 190/190 (100.00%), Postives = 190/190 (100.00%), Query Frame = 0
BLAST of CmoCh08G002330 vs. ExPASy TrEMBL
Match: A0A6J1H7K6 (uncharacterized protein LOC111460890 isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC111460890 PE=3 SV=1) HSP 1 Score: 374.4 bits (960), Expect = 2.8e-100 Identity = 190/190 (100.00%), Postives = 190/190 (100.00%), Query Frame = 0
BLAST of CmoCh08G002330 vs. ExPASy TrEMBL
Match: A0A6J1H9P7 (uncharacterized protein LOC111460890 isoform X4 OS=Cucurbita moschata OX=3662 GN=LOC111460890 PE=3 SV=1) HSP 1 Score: 374.4 bits (960), Expect = 2.8e-100 Identity = 190/190 (100.00%), Postives = 190/190 (100.00%), Query Frame = 0
BLAST of CmoCh08G002330 vs. NCBI nr
Match: XP_022960004.1 (uncharacterized protein LOC111460890 isoform X1 [Cucurbita moschata] >XP_022960005.1 uncharacterized protein LOC111460890 isoform X1 [Cucurbita moschata] >XP_022960006.1 uncharacterized protein LOC111460890 isoform X1 [Cucurbita moschata]) HSP 1 Score: 374.4 bits (960), Expect = 5.8e-100 Identity = 190/190 (100.00%), Postives = 190/190 (100.00%), Query Frame = 0
BLAST of CmoCh08G002330 vs. NCBI nr
Match: XP_023513787.1 (uncharacterized protein LOC111778291 isoform X4 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 374.4 bits (960), Expect = 5.8e-100 Identity = 190/190 (100.00%), Postives = 190/190 (100.00%), Query Frame = 0
BLAST of CmoCh08G002330 vs. NCBI nr
Match: XP_022960010.1 (uncharacterized protein LOC111460890 isoform X5 [Cucurbita moschata]) HSP 1 Score: 374.4 bits (960), Expect = 5.8e-100 Identity = 190/190 (100.00%), Postives = 190/190 (100.00%), Query Frame = 0
BLAST of CmoCh08G002330 vs. NCBI nr
Match: XP_023513782.1 (uncharacterized protein LOC111778291 isoform X1 [Cucurbita pepo subsp. pepo] >XP_023513783.1 uncharacterized protein LOC111778291 isoform X1 [Cucurbita pepo subsp. pepo] >XP_023513784.1 uncharacterized protein LOC111778291 isoform X1 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 374.4 bits (960), Expect = 5.8e-100 Identity = 190/190 (100.00%), Postives = 190/190 (100.00%), Query Frame = 0
BLAST of CmoCh08G002330 vs. NCBI nr
Match: XP_022960007.1 (uncharacterized protein LOC111460890 isoform X2 [Cucurbita moschata]) HSP 1 Score: 374.4 bits (960), Expect = 5.8e-100 Identity = 190/190 (100.00%), Postives = 190/190 (100.00%), Query Frame = 0
BLAST of CmoCh08G002330 vs. TAIR 10
Match: AT4G27870.1 (Vacuolar iron transporter (VIT) family protein ) HSP 1 Score: 126.3 bits (316), Expect = 2.6e-29 Identity = 69/178 (38.76%), Postives = 115/178 (64.61%), Query Frame = 0
BLAST of CmoCh08G002330 vs. TAIR 10
Match: AT5G24290.2 (Vacuolar iron transporter (VIT) family protein ) HSP 1 Score: 100.9 bits (250), Expect = 1.2e-21 Identity = 57/163 (34.97%), Postives = 97/163 (59.51%), Query Frame = 0
BLAST of CmoCh08G002330 vs. TAIR 10
Match: AT5G24290.1 (Vacuolar iron transporter (VIT) family protein ) HSP 1 Score: 100.9 bits (250), Expect = 1.2e-21 Identity = 57/163 (34.97%), Postives = 97/163 (59.51%), Query Frame = 0
BLAST of CmoCh08G002330 vs. TAIR 10
Match: AT4G27860.1 (vacuolar iron transporter (VIT) family protein ) HSP 1 Score: 99.8 bits (247), Expect = 2.6e-21 Identity = 67/182 (36.81%), Postives = 102/182 (56.04%), Query Frame = 0
BLAST of CmoCh08G002330 vs. TAIR 10
Match: AT4G27860.2 (vacuolar iron transporter (VIT) family protein ) HSP 1 Score: 99.8 bits (247), Expect = 2.6e-21 Identity = 67/182 (36.81%), Postives = 102/182 (56.04%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
|