CmoCh08G001790 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh08G001790
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionProtein of unknown function (DUF 3339)
LocationCmo_Chr08: 1053587 .. 1054794 (-)
RNA-Seq ExpressionCmoCh08G001790
SyntenyCmoCh08G001790
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAGATTGGGGGCCAGTTTTTGTGGCTGTCATTCTGTTTGTTTTGCTAACACCTGGGCTGCTTTTCCAGCTTCCTGGAAATCGAAGGTGCTTGGAGTTCGGCAACTTTCACACCAGCGCTGCTGCTATCGTCGTTCATTCTCTTCTCTACTTCGGTCTCATTTGCGTCTTCTTGCTCGCCATCAAGGTTCATCTCTACATTGGTTAATCGAGCTTCACCTCTACTTTTGTTCGTTTCTAATTCTTCCACCAAATGCATAGTCACTTCAACTTTGTTTTGATTAGTTTGTTCTAAATATTCGGTCGATGTCCTAGGTTTTCAAGTACGTGTAGCAAAATTGTTGAGTTATCGAACATATAGTAGGCTTCATCATTTCAAAGTTGTGCTATCTTGAGGCTTTGTATTGGCTATGGACGTTTTTCTTTAAGATCTGAACTTTATCCTTCGACCCATTTAACAAAACTCACTTGAATGAATATGGTTAATCTAAACGAACATAAAGTTGAACAATTTTAGTGCACTTGGGGTTGGGGGTTGGATGTTACACAAACAAATAGCTCTAAAAGTGTGAGATCCCACATCAACCGGAAAAGGAACAAGTACCAACAAAGCTAGACAAGGATTGTGAGATCTCACATCGATTTGAGAAGGGAACGAAACATTTTTTATAAGAATGTAGAAACCTCTTCCTAATAAACCCATTTTGAAAACCTTGAGGGGAAGCCCAAAAGAAAAAGCTCAAAGAAGACATGTTAGTGGTAGACTTAGACTGATACCTGAGAGTCTAAGCTAAGATTTCTCTGAAAGACGAAACCTATAACAGCCCAGATCCACCGCTAGCAGATATTGTCCTACTTGGACTTTCCCTTTCGGGCTTCCCCTCAAAGTTTTAAAACGCGTTTGCTAGGGAAAGGTTTTCACACCCTTATAACGGGTGTTTTGGTCTCCTCCCCAACCAACGTGGGACATCACATGGGACATCACAAAACCTCCGACACCATGAAAATGAACCTTCACAATTGTTACGACATTTTTTATTTCTTTTTGTTTTATAGCCTAACAGGCATTTCAAACAGTGGCAGTTACACATATGGACTCAAAGTCTTAAAAGCAGGAAGATACACAACACAATGTCACTCCACAACCTCAAAAAACAACAAACGGTGGTAAATAATTCAAACTTCATCTTGCCTATATGTTTCTAG

mRNA sequence

ATGGCAGATTGGGGGCCAGTTTTTGTGGCTGTCATTCTGTTTGTTTTGCTAACACCTGGGCTGCTTTTCCAGCTTCCTGGAAATCGAAGGTGCTTGGAGTTCGGCAACTTTCACACCAGCGCTGCTGCTATCGTCGTTCATTCTCTTCTCTACTTCGGTCTCATTTGCGTCTTCTTGCTCGCCATCAAGCCTAACAGGCATTTCAAACAGTGGCAGTTACACATATGGACTCAAAGTCTTAAAAGCAGGAAGATACACAACACAATGTCACTCCACAACCTCAAAAAACAACAAACGGTGGTAAATAATTCAAACTTCATCTTGCCTATATGTTTCTAG

Coding sequence (CDS)

ATGGCAGATTGGGGGCCAGTTTTTGTGGCTGTCATTCTGTTTGTTTTGCTAACACCTGGGCTGCTTTTCCAGCTTCCTGGAAATCGAAGGTGCTTGGAGTTCGGCAACTTTCACACCAGCGCTGCTGCTATCGTCGTTCATTCTCTTCTCTACTTCGGTCTCATTTGCGTCTTCTTGCTCGCCATCAAGCCTAACAGGCATTTCAAACAGTGGCAGTTACACATATGGACTCAAAGTCTTAAAAGCAGGAAGATACACAACACAATGTCACTCCACAACCTCAAAAAACAACAAACGGTGGTAAATAATTCAAACTTCATCTTGCCTATATGTTTCTAG

Protein sequence

MADWGPVFVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAAAIVVHSLLYFGLICVFLLAIKPNRHFKQWQLHIWTQSLKSRKIHNTMSLHNLKKQQTVVNNSNFILPICF
Homology
[Close]
BLAST of CmoCh08G001790 vs. ExPASy TrEMBL
Match: A0A6J1KVP8 (uncharacterized protein LOC111497623 OS=Cucurbita maxima OX=3661 GN=LOC111497623 PE=4 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 9.3e-27
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 0 

Query: 1  MADWGPVFVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAAAIVVHSLLYFGLICVFLL 60
          MADWGPVFVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAAAIVVHSLLYFGLICVFLL
Sbjct: 1  MADWGPVFVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAAAIVVHSLLYFGLICVFLL 60

Query: 61 AIK 64
          AIK
Sbjct: 61 AIK 63

[Close]
BLAST of CmoCh08G001790 vs. ExPASy TrEMBL
Match: A0A6J1H7E6 (uncharacterized protein LOC111461116 OS=Cucurbita moschata OX=3662 GN=LOC111461116 PE=4 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 9.3e-27
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 0 

Query: 1  MADWGPVFVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAAAIVVHSLLYFGLICVFLL 60
          MADWGPVFVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAAAIVVHSLLYFGLICVFLL
Sbjct: 1  MADWGPVFVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAAAIVVHSLLYFGLICVFLL 60

Query: 61 AIK 64
          AIK
Sbjct: 61 AIK 63

[Close]
BLAST of CmoCh08G001790 vs. ExPASy TrEMBL
Match: A0A6J1JSS9 (uncharacterized protein LOC111488037 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111488037 PE=4 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 2.7e-26
Identity = 61/63 (96.83%), Postives = 63/63 (100.00%), Query Frame = 0 

Query: 1  MADWGPVFVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAAAIVVHSLLYFGLICVFLL 60
          MADWGPVFVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAAAI+VHS+LYFGLICVFLL
Sbjct: 1  MADWGPVFVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAAAIIVHSVLYFGLICVFLL 60

Query: 61 AIK 64
          AIK
Sbjct: 61 AIK 63

[Close]
BLAST of CmoCh08G001790 vs. ExPASy TrEMBL
Match: A0A6J1JUR0 (uncharacterized protein LOC111488037 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111488037 PE=4 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 2.7e-26
Identity = 61/63 (96.83%), Postives = 63/63 (100.00%), Query Frame = 0 

Query: 1  MADWGPVFVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAAAIVVHSLLYFGLICVFLL 60
          MADWGPVFVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAAAI+VHS+LYFGLICVFLL
Sbjct: 1  MADWGPVFVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAAAIIVHSVLYFGLICVFLL 60

Query: 61 AIK 64
          AIK
Sbjct: 61 AIK 63

[Close]
BLAST of CmoCh08G001790 vs. ExPASy TrEMBL
Match: A0A0A0KAG8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G095300 PE=4 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 2.7e-26
Identity = 60/63 (95.24%), Postives = 63/63 (100.00%), Query Frame = 0 

Query: 1  MADWGPVFVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAAAIVVHSLLYFGLICVFLL 60
          MADWGP+FVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAAAI+VHS+LYFGLICVFLL
Sbjct: 1  MADWGPIFVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAAAIIVHSILYFGLICVFLL 60

Query: 61 AIK 64
          AIK
Sbjct: 61 AIK 63

[Close]
BLAST of CmoCh08G001790 vs. NCBI nr
Match: XP_022960371.1 (uncharacterized protein LOC111461116 [Cucurbita moschata] >XP_023004229.1 uncharacterized protein LOC111497623 [Cucurbita maxima] >XP_023513527.1 uncharacterized protein LOC111778105 [Cucurbita pepo subsp. pepo] >KAG7025376.1 hypothetical protein SDJN02_11871, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 129.4 bits (324), Expect = 1.9e-26
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 0 

Query: 1  MADWGPVFVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAAAIVVHSLLYFGLICVFLL 60
          MADWGPVFVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAAAIVVHSLLYFGLICVFLL
Sbjct: 1  MADWGPVFVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAAAIVVHSLLYFGLICVFLL 60

Query: 61 AIK 64
          AIK
Sbjct: 61 AIK 63

[Close]
BLAST of CmoCh08G001790 vs. NCBI nr
Match: XP_022953200.1 (uncharacterized protein LOC111455815 [Cucurbita moschata])

HSP 1 Score: 127.9 bits (320), Expect = 5.6e-26
Identity = 61/63 (96.83%), Postives = 63/63 (100.00%), Query Frame = 0 

Query: 1  MADWGPVFVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAAAIVVHSLLYFGLICVFLL 60
          MADWGPVFVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAAAI+VHS+LYFGLICVFLL
Sbjct: 1  MADWGPVFVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAAAIIVHSVLYFGLICVFLL 60

Query: 61 AIK 64
          AIK
Sbjct: 61 AIK 63

[Close]
BLAST of CmoCh08G001790 vs. NCBI nr
Match: XP_011656810.1 (uncharacterized protein LOC101208994 [Cucumis sativus] >KGN46463.1 hypothetical protein Csa_005508 [Cucumis sativus])

HSP 1 Score: 127.9 bits (320), Expect = 5.6e-26
Identity = 60/63 (95.24%), Postives = 63/63 (100.00%), Query Frame = 0 

Query: 1  MADWGPVFVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAAAIVVHSLLYFGLICVFLL 60
          MADWGP+FVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAAAI+VHS+LYFGLICVFLL
Sbjct: 1  MADWGPIFVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAAAIIVHSILYFGLICVFLL 60

Query: 61 AIK 64
          AIK
Sbjct: 61 AIK 63

[Close]
BLAST of CmoCh08G001790 vs. NCBI nr
Match: XP_022991384.1 (uncharacterized protein LOC111488037 isoform X1 [Cucurbita maxima])

HSP 1 Score: 127.9 bits (320), Expect = 5.6e-26
Identity = 61/63 (96.83%), Postives = 63/63 (100.00%), Query Frame = 0 

Query: 1  MADWGPVFVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAAAIVVHSLLYFGLICVFLL 60
          MADWGPVFVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAAAI+VHS+LYFGLICVFLL
Sbjct: 1  MADWGPVFVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAAAIIVHSVLYFGLICVFLL 60

Query: 61 AIK 64
          AIK
Sbjct: 61 AIK 63

[Close]
BLAST of CmoCh08G001790 vs. NCBI nr
Match: XP_022991385.1 (uncharacterized protein LOC111488037 isoform X2 [Cucurbita maxima] >XP_023514785.1 uncharacterized protein LOC111778992 [Cucurbita pepo subsp. pepo] >KAG7014656.1 hypothetical protein SDJN02_24835, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 127.9 bits (320), Expect = 5.6e-26
Identity = 61/63 (96.83%), Postives = 63/63 (100.00%), Query Frame = 0 

Query: 1  MADWGPVFVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAAAIVVHSLLYFGLICVFLL 60
          MADWGPVFVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAAAI+VHS+LYFGLICVFLL
Sbjct: 1  MADWGPVFVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAAAIIVHSVLYFGLICVFLL 60

Query: 61 AIK 64
          AIK
Sbjct: 61 AIK 63

[Close]
BLAST of CmoCh08G001790 vs. TAIR 10
Match: AT5G08391.1 (Protein of unknown function (DUF 3339) )

HSP 1 Score: 103.2 bits (256), Expect = 1.4e-22
Identity = 46/63 (73.02%), Postives = 56/63 (88.89%), Query Frame = 0 

Query: 1  MADWGPVFVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAAAIVVHSLLYFGLICVFLL 60
          M+DWGPV V VILFV+LTPGLLFQLPG ++ +EFGNF TSA +++VHSLLYF L+CVFLL
Sbjct: 1  MSDWGPVLVTVILFVMLTPGLLFQLPGRQKYVEFGNFQTSAVSVIVHSLLYFSLVCVFLL 60

Query: 61 AIK 64
          A+K
Sbjct: 61 ALK 63

[Close]
BLAST of CmoCh08G001790 vs. TAIR 10
Match: AT3G48660.1 (Protein of unknown function (DUF 3339) )

HSP 1 Score: 92.8 bits (229), Expect = 1.9e-19
Identity = 46/77 (59.74%), Postives = 58/77 (75.32%), Query Frame = 0 

Query: 1  MADWGPVFVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAAAIVVHSLLYFGLICVFLL 60
          MADWGPV VAVILFVLLTPGLLFQ+P   R +EFGN  TS A+I+VH++++FGLI +F +
Sbjct: 1  MADWGPVVVAVILFVLLTPGLLFQIPARGRVVEFGNMQTSGASILVHTIIFFGLITIFTI 60

Query: 61 AIKPNRHFKQWQLHIWT 78
          AI+         LHI+T
Sbjct: 61 AIR---------LHIYT 68

[Close]
BLAST of CmoCh08G001790 vs. TAIR 10
Match: AT3G27030.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3339 (InterPro:IPR021775); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF 3339) (TAIR:AT5G40970.1); Has 538 Blast hits to 271 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 534; Viruses - 4; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 90.9 bits (224), Expect = 7.1e-19
Identity = 40/63 (63.49%), Postives = 51/63 (80.95%), Query Frame = 0 

Query: 1  MADWGPVFVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAAAIVVHSLLYFGLICVFLL 60
          M DWGPVFVAV LFVLLTPGLL Q+PG  R +EFG F TS  +++VH+L+YF L+C+ LL
Sbjct: 1  MPDWGPVFVAVTLFVLLTPGLLIQVPGRGRVVEFGTFQTSGLSVIVHTLIYFTLVCILLL 60

Query: 61 AIK 64
          A++
Sbjct: 61 ALQ 63

[Close]
BLAST of CmoCh08G001790 vs. TAIR 10
Match: AT5G63500.1 (Protein of unknown function (DUF 3339) )

HSP 1 Score: 88.2 bits (217), Expect = 4.6e-18
Identity = 39/62 (62.90%), Postives = 52/62 (83.87%), Query Frame = 0 

Query: 1  MADWGPVFVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAAAIVVHSLLYFGLICVFLL 60
          MADWGPV +AVILFV+L+PGLLFQ+P   R +EFGN  TS A+I+VH++++FGLI +F +
Sbjct: 1  MADWGPVLIAVILFVVLSPGLLFQIPAGGRVVEFGNMQTSGASILVHAIIFFGLITIFTI 60

Query: 61 AI 63
          AI
Sbjct: 61 AI 62

[Close]
BLAST of CmoCh08G001790 vs. TAIR 10
Match: AT5G40980.1 (Protein of unknown function (DUF 3339) )

HSP 1 Score: 84.7 bits (208), Expect = 5.1e-17
Identity = 37/67 (55.22%), Postives = 52/67 (77.61%), Query Frame = 0 

Query: 2  ADWGPVFVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAAAIVVHSLLYFGLICVFLLA 61
          ADWGPV VAV LF+LL+PGLLFQLP   R +EFGN  TS  +I+VH+++YF ++ + ++A
Sbjct: 3  ADWGPVIVAVALFILLSPGLLFQLPARTRVMEFGNMSTSGISILVHAIIYFCILTILIIA 62

Query: 62 IKPNRHF 69
          I+ + HF
Sbjct: 63 IQIHIHF 69

The following BLAST results are available for this feature:
BLAST of CmoCh08G001790 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh08G001790 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1KVP89.3e-27100.00uncharacterized protein LOC111497623 OS=Cucurbita maxima OX=3661 GN=LOC111497623... [more]
A0A6J1H7E69.3e-27100.00uncharacterized protein LOC111461116 OS=Cucurbita moschata OX=3662 GN=LOC1114611... [more]
A0A6J1JSS92.7e-2696.83uncharacterized protein LOC111488037 isoform X2 OS=Cucurbita maxima OX=3661 GN=L... [more]
A0A6J1JUR02.7e-2696.83uncharacterized protein LOC111488037 isoform X1 OS=Cucurbita maxima OX=3661 GN=L... [more]
A0A0A0KAG82.7e-2695.24Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G095300 PE=4 SV=1[more]
BLAST of CmoCh08G001790 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022960371.11.9e-26100.00uncharacterized protein LOC111461116 [Cucurbita moschata] >XP_023004229.1 unchar... [more]
XP_022953200.15.6e-2696.83uncharacterized protein LOC111455815 [Cucurbita moschata][more]
XP_011656810.15.6e-2695.24uncharacterized protein LOC101208994 [Cucumis sativus] >KGN46463.1 hypothetical ... [more]
XP_022991384.15.6e-2696.83uncharacterized protein LOC111488037 isoform X1 [Cucurbita maxima][more]
XP_022991385.15.6e-2696.83uncharacterized protein LOC111488037 isoform X2 [Cucurbita maxima] >XP_023514785... [more]
BLAST of CmoCh08G001790 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G08391.11.4e-2273.02Protein of unknown function (DUF 3339) [more]
AT3G48660.11.9e-1959.74Protein of unknown function (DUF 3339) [more]
AT3G27030.17.1e-1963.49unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT5G63500.14.6e-1862.90Protein of unknown function (DUF 3339) [more]
AT5G40980.15.1e-1755.22Protein of unknown function (DUF 3339) [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR021775Protein of unknown function DUF3339PFAMPF11820DUF3339coord: 1..63
e-value: 1.3E-31
score: 108.5
IPR021775Protein of unknown function DUF3339PANTHERPTHR33128OS05G0103400 PROTEINcoord: 1..64
NoneNo IPR availablePANTHERPTHR33128:SF62SUBFAMILY NOT NAMEDcoord: 1..64

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh08G001790.1CmoCh08G001790.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane