CmoCh08G001170 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh08G001170
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionCoiled-coil domain-containing protein 92
LocationCmo_Chr08: 603045 .. 606399 (-)
RNA-Seq ExpressionCmoCh08G001170
SyntenyCmoCh08G001170
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGATTGTTTGGAATGTGGCCGTCATTATATTTTCTGCTTTGTATGCCTTCCTAAGCTCTTTTCCCTTGGGAGTTCAATAAATATCTTATCATTTTTTTTTTTTTTTTTTTTAATATTCCCTTCAATGTCTCTTCGTGCTGTATTGCTTGTTTCATCATATGAATTATTAACAACTCTGTTTCACCATTTGAATGATTGAAATGGTGTATGTCGACAACCTTGTGAACCTGTTGCAAGGCTTCTATCTACGTCAATAGGGAAGGGAAGAGAGAGCTAGAAGAGATTTCTATTCTTTAGCTAGATAGGGGCATGTGGGGATAGGCGTATGTGGGAATTCATTCTTAATGGGAGAATGGAATAGGGGGATTGTGTAAGGGAATTCATTCTTAATGGGAGAATGGAATAGGGGGATTGTGTAAGGGAATTCATTCTTAATGGGAGAATGGAATAGGGGGATTGTGTAACGACCCAGATTCACTGCTAGCAGATATTGTCCTCTTTGGGCTCTCGGCGGGCTTCCCCTCAAGGCTTTAAAACGCTTCTGCTGGGGTAGGGGAAGGTTTTCACACTCTTATTATAAATAGTGGCAACCAATGTGGGACCTCACAAATTGGGAATAGAAGTTCATTCTATACCCTTGTGGTTTGTTTTCCTCTCCAACCAATGTGGGACATCACAAATTGGGAATAGAGGTTCGTGTGGACTCGAACTAGAAAACAAGGAATGAAAGAGAGTGAGTTAGAAGAGATTTCTCTTTATAGTTGAATAGAGGGACAAAGAATAGAGGTCCGTGAAAATTCATTTTAAACGAAAAATAGGGAATTTCTCTTTATAGTTGAATAGAGGGACAAAGAATAGAGGTCCGTGAAAATTCATTTTAAACGAAAAATAGGGAATAGAAGAGAGAGCGAACAGAGATTTTTCTTCTTAGCTAAAGAGGAACGAGAATTATAGCCGAGATGTTCCCTTCCCCGTCCTAGGTGAGATGTCCAAGTTGGTATAGCAGATTTTAGCTATACTTCAAGAGTTTAGTATCATTCGATGTTTTTAAGGTTTTCTTTTCTTGTTATAATTAATGCTCCAAAAACAATGATCCTATGATGTTTAGAAGGTTCATCCTGTTTGTCTTTTCTGCTCTTTTTTTCTTATTGGAAAAAGAACAACTAAGAACACAGTTTTCAAAACAAGCTTCAATGTTTAATGTTGTAAGCTATTCCCAATTACAAGAAGTTGGAGTCGAAGATGGTTTCAAGACCTTTGTGTACACTGTTTATTAGGATTGGCAAAGACTTATGAGCTGATTCAACAACAATATCACTGCTTATTTTGTTCTTTCCAAATCCGTCCCATGATCCGCAACTTCAGCTCTTTCCTTTCCCCGCCCGAGAAGAACAGTGCCATGTTTCGATGTATAATGAGGCCATCGTGGCTGTCTCGGACTTTCTTGTGGTTGTCCCGAATGCTTCGAGGGTTGCCTTCCCACGTTAGCTTCCTCCCATTCCCACCGGCCTCGAGGCTGTAACTGTAGTTTCGGGCGTCTGTTTCGTCGCCCATGAATCGGAGAAACACCATGTAAACTGGTGCCATACCAAGCTGAAAGGCTTCAAAATGAAGACAGAAATACTGGTCAAAACAGTGGAAGACCTGCACAAAGGTGAAATAAGAGCCATCAACAGAAGCTCGCGTAAGAAGTAAGACGTGATCTTGGATATCGTCTCGTGAAATCGTTCAACAGATACTCACAGTTAACATCCATATAGCGTTTTCAACTTCGCATGGATTAGCCTTTACGTAACGATGATTAAACGTGCATCCAGAATGCATATCGACTTTGTGATCATCTCGAAGATGAGAAACAAGGAAAGGAATCTCCCCATCAATTGGGCAGTCTGATCCAGCATAAGGGCAGGTATATGGTCTGAAGTAACAGGCAGATTCATGTTTTAGTTTACTATAGTACGGCAATATCTCCGAGCACCCGAACGTGCAGAATTTACAAGCCAGTTTAAGCGATTCGGCTATTTTTTCTAATGCTAGACATCTAATATCACCGAGCTCTTGTCTGCACGTCGGGCAACGGTTGTCTACCTTCGTTTTACACGAAGAACAGAGGGTATGTCCATTGGGACACTGCACAAACAAAACAATAAGTTCACAACATTCAGCAATATCTTCTCATTTGATGAAGCCACAGATCTCAAGGTAGAATCCGAGTTCTCAATAATAAAATCCTGGTTATAAAAAACATCCTCTTATAGTCCAAGTTCACTGCTCACAAATCTTGTTTGCTTTGACTCGTTACGTATCGCTATCAACCTCACGACCTTAAAACGTGTTTGCCCAGGGAGAGGTTTCCACACCCTTTAAGGAATGTTTCGTTCCCCTCTCTAACCATCGTGGGATCTCACAATCCATTCCTCTTGACGGTTCATTATCCTCACTAACAAACAGCTTGGTGTCTGACTTTGATACCATTTGTAACCGCCCAAGCCTACCGCTAGTTGATATGGTCCATTTTGACCCGTTACGTATCTTCACAAGGGTGTGTAAATCTCTCCCAAGTAGACAAATTTTAAAACCGTGAGACTGACGACGATACATAACAAGTCAAAGCGAACAATATCTGCTAGGCTTGTTACACGAGGTCACAAAGAGGAGCCCCCCTTCCCCAATGGAGGGTGTGGAAATCTCTCTCTAGTTGATGGATTTTACAACCGTGAGACTAACGACGATACATAACAAGCCAAAGTGAACAATATCTGCTAGGCTTGTTACACAAGGTCACACAGAGGAACCCCACTTCCCCAATGGAGGGTGTGGAAATCTCTCTCTAGTAGACGGATTTTAAAACCGTGAGGCTGACGAGGATACATAACAAGCTAAAGCACAGCAACAATTGTCTCTAAACAACAAAAAAAGCTATTCATTTTGCAAATGAGTATATGCAACAGCAAGGGTTTAACCAAACAATTGATACTCATTTCATGAACCAAAGGCCTCATTAAACAGAACATTTCTGAAACAACAAACCCACAGCTTCAGCATAATCAAACAGATCAGAAACCACAAACACCAAACGAATTGAAACAAAAACAGCAACGAACTTGAAGGAACCTGATGAATTGGAGGATACATAGAATTAGTGCAGACAGGACATTCCAGCAGCTCGTGGACACTTGTAGTGGTCGGATTGTCGTTATTGCTGATCCGAGGCTTGGAAATCGACGGAAACTGACAGTGACATTGAAGGGTCTTGTCCTCCTCGTTCATCACGTCCATGGACGGCGGCGCGCGTTCGAGGCCATCCAACTCCATTTTCGGAAAATAATAAGCCTCTCCGACTTGGAATGA

mRNA sequence

ATGGCGATTCTTCCTCCCATTCCCACCGGCCTCGAGGCTGTAACTGTAGTTTCGGGCGTCTGTTTCGTCGCCCATGAATCGGAGAAACACCATGTAAACTGGTGCCATACCAAGCTGAAAGGCTTCAAAATGAAGACAGAAATACTGGTCAAAACAGTGGAAGACCTGCACAAAGGTGAAATAAGAGCCATCAACAGAAGCTCGCACAGGACATTCCAGCAGCTCGTGGACACTTGTAGTGGTCGGATTGTCGTTATTGCTGATCCGAGGCTTGGAAATCGACGGAAACTGACAGTGACATTGAAGGGTCTTGTCCTCCTCGTTCATCACGTCCATGGACGGCGGCGCGCGTTCGAGGCCATCCAACTCCATTTTCGGAAAATAATAAGCCTCTCCGACTTGGAATGA

Coding sequence (CDS)

ATGGCGATTCTTCCTCCCATTCCCACCGGCCTCGAGGCTGTAACTGTAGTTTCGGGCGTCTGTTTCGTCGCCCATGAATCGGAGAAACACCATGTAAACTGGTGCCATACCAAGCTGAAAGGCTTCAAAATGAAGACAGAAATACTGGTCAAAACAGTGGAAGACCTGCACAAAGGTGAAATAAGAGCCATCAACAGAAGCTCGCACAGGACATTCCAGCAGCTCGTGGACACTTGTAGTGGTCGGATTGTCGTTATTGCTGATCCGAGGCTTGGAAATCGACGGAAACTGACAGTGACATTGAAGGGTCTTGTCCTCCTCGTTCATCACGTCCATGGACGGCGGCGCGCGTTCGAGGCCATCCAACTCCATTTTCGGAAAATAATAAGCCTCTCCGACTTGGAATGA

Protein sequence

MAILPPIPTGLEAVTVVSGVCFVAHESEKHHVNWCHTKLKGFKMKTEILVKTVEDLHKGEIRAINRSSHRTFQQLVDTCSGRIVVIADPRLGNRRKLTVTLKGLVLLVHHVHGRRRAFEAIQLHFRKIISLSDLE
Homology
[Close]
BLAST of CmoCh08G001170 vs. ExPASy TrEMBL
Match: A0A5A7NXG4 (Coiled-coil domain-containing protein 92 OS=Striga asiatica OX=4170 GN=STAS_00754 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 2.9e-06
Identity = 29/55 (52.73%), Postives = 41/55 (74.55%), Query Frame = 0 

Query: 4   LPPIPTGLEAVTVVSGVCFVAHESEKHHVNWCHTKLKGFKMKTEILVKTVEDLHK 59
           LPP+ +  EAV VVS +  V+H++EK HVN CH++LKG K++ EIL +T+E L K
Sbjct: 61  LPPVASDFEAVAVVSSLRLVSHKTEKGHVNGCHSQLKGLKVEAEILSETMEYLIK 115

[Close]
BLAST of CmoCh08G001170 vs. NCBI nr
Match: GER25179.1 (coiled-coil domain-containing protein 92 [Striga asiatica])

HSP 1 Score: 61.6 bits (148), Expect = 5.9e-06
Identity = 29/55 (52.73%), Postives = 41/55 (74.55%), Query Frame = 0 

Query: 4   LPPIPTGLEAVTVVSGVCFVAHESEKHHVNWCHTKLKGFKMKTEILVKTVEDLHK 59
           LPP+ +  EAV VVS +  V+H++EK HVN CH++LKG K++ EIL +T+E L K
Sbjct: 61  LPPVASDFEAVAVVSSLRLVSHKTEKGHVNGCHSQLKGLKVEAEILSETMEYLIK 115

The following BLAST results are available for this feature:
BLAST of CmoCh08G001170 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh08G001170 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7NXG42.9e-0652.73Coiled-coil domain-containing protein 92 OS=Striga asiatica OX=4170 GN=STAS_0075... [more]
BLAST of CmoCh08G001170 vs. NCBI nr
Match NameE-valueIdentityDescription
GER25179.15.9e-0652.73coiled-coil domain-containing protein 92 [Striga asiatica][more]
BLAST of CmoCh08G001170 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh08G001170.1CmoCh08G001170.1mRNA