CmoCh08G000620 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh08G000620
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionPentatricopeptide repeat-containing protein
LocationCmo_Chr08: 366046 .. 366522 (+)
RNA-Seq ExpressionCmoCh08G000620
SyntenyCmoCh08G000620
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGTGCGATCGGCATGTGAAGCCCAATCGGTTCCCATTCCCTTCTGTATTGAAGGCCTGCGCTAGAGCTTCGAAGGGGAAACAGGTACATGGGTTGATTGTAAAGTTTGGTTTTGATGGGGATGAGTTTGTAATTAGTCATCTGGTTCGGATGGAGTTAGATAAGATGAGACAAGATAGGAGTGTTTTGTGGATAATGATGTTCGATGGGCATGTTAGACTTGGCCATTTAAAGAATGCTAAGAACCTGTTCGACGAAATGCCTCACAGAAGTGAAGTGTCATGGAACGTGATGATATCGGGGTATTCTCAAAATGGGCATTTCATGGAGGCTGTAAACATGTTTGAAGAAGCAAATTTCGAATCATGCTCCAAACTATGCGACTTTGGTGAGTATCTTGCCTGCCATTTCTCGAATGGGTGCATTAGAATTGGAGAAATGGATCCATTTATATGCACGAAAGAACGAGACTGA

mRNA sequence

ATGTTGTGCGATCGGCATGTGAAGCCCAATCGGTTCCCATTCCCTTCTGTATTGAAGGCCTGCGCTAGAGCTTCGAAGGGGAAACAGGTACATGGGTTGATTGTAAAGTTTGGTTTTGATGGGGATGAGTTTGTAATTAGTCATCTGGTTCGGATGGAGTTAGATAAGATGAGACAAGATAGGAGTGTTTTGTGGATAATGATGTTCGATGGGCATGTTAGACTTGGCCATTTAAAGAATGCTAAGAACCTGTTCGACGAAATGCCTCACAGAAGTGAAGTGTCATGGAACGTGATGATATCGGGGTATTCTCAAAATGGGCATTTCATGGAGGCTGTAAACATGTTTGAAGAAGCAAATTTCGAATCATGCTCCAAACTATGCGACTTTGGTGAGTATCTTGCCTGCCATTTCTCGAATGGGTGCATTAGAATTGGAGAAATGGATCCATTTATATGCACGAAAGAACGAGACTGA

Coding sequence (CDS)

ATGTTGTGCGATCGGCATGTGAAGCCCAATCGGTTCCCATTCCCTTCTGTATTGAAGGCCTGCGCTAGAGCTTCGAAGGGGAAACAGGTACATGGGTTGATTGTAAAGTTTGGTTTTGATGGGGATGAGTTTGTAATTAGTCATCTGGTTCGGATGGAGTTAGATAAGATGAGACAAGATAGGAGTGTTTTGTGGATAATGATGTTCGATGGGCATGTTAGACTTGGCCATTTAAAGAATGCTAAGAACCTGTTCGACGAAATGCCTCACAGAAGTGAAGTGTCATGGAACGTGATGATATCGGGGTATTCTCAAAATGGGCATTTCATGGAGGCTGTAAACATGTTTGAAGAAGCAAATTTCGAATCATGCTCCAAACTATGCGACTTTGGTGAGTATCTTGCCTGCCATTTCTCGAATGGGTGCATTAGAATTGGAGAAATGGATCCATTTATATGCACGAAAGAACGAGACTGA

Protein sequence

MLCDRHVKPNRFPFPSVLKACARASKGKQVHGLIVKFGFDGDEFVISHLVRMELDKMRQDRSVLWIMMFDGHVRLGHLKNAKNLFDEMPHRSEVSWNVMISGYSQNGHFMEAVNMFEEANFESCSKLCDFGEYLACHFSNGCIRIGEMDPFICTKERD
Homology
[Close]
BLAST of CmoCh08G000620 vs. ExPASy Swiss-Prot
Match: Q9FI80 (Pentatricopeptide repeat-containing protein At5g48910 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H38 PE=2 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 3.2e-30
Identity = 72/147 (48.98%), Postives = 91/147 (61.90%), Query Frame = 0 

Query: 1   MLCDRHVKPNRFPFPSVLKACARASK---GKQVHGLIVKFGFDGDEFVISHLVRMEL--- 60
           M+ D  V+PNRF FPSVLKACA+  K   GKQ+HGL +K+GF GDEFV+S+LVRM +   
Sbjct: 118 MMSDEFVEPNRFTFPSVLKACAKTGKIQEGKQIHGLALKYGFGGDEFVMSNLVRMYVMCG 177

Query: 61  ----------------------DKMRQD-RSVLWIMMFDGHVRLGHLKNAKNLFDEMPHR 119
                                 D+ ++D   VLW +M DG++RLG  K A+ LFD+M  R
Sbjct: 178 FMKDARVLFYKNIIEKDMVVMTDRRKRDGEIVLWNVMIDGYMRLGDCKAARMLFDKMRQR 237

[Close]
BLAST of CmoCh08G000620 vs. ExPASy Swiss-Prot
Match: Q9SJG6 (Pentatricopeptide repeat-containing protein At2g42920, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-E75 PE=2 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 9.7e-19
Identity = 53/134 (39.55%), Postives = 74/134 (55.22%), Query Frame = 0 

Query: 1   MLCDR-HVKPNRFPFPSVLKACAR---ASKGKQVHGLIVKFGFDGDEFVISHLVRMELD- 60
           MLC    VKP R  +PSV KA  R   A  G+Q+HG+++K G + D F+ + ++ M +  
Sbjct: 115 MLCSSPSVKPQRLTYPSVFKAYGRLGQARDGRQLHGMVIKEGLEDDSFIRNTMLHMYVTC 174

Query: 61  -----------KMRQDRSVLWIMMFDGHVRLGHLKNAKNLFDEMPHRSEVSWNVMISGYS 119
                       M     V W  M  G  + G +  A+NLFDEMP R+ VSWN MISG+ 
Sbjct: 175 GCLIEAWRIFLGMIGFDVVAWNSMIMGFAKCGLIDQAQNLFDEMPQRNGVSWNSMISGFV 234

[Close]
BLAST of CmoCh08G000620 vs. ExPASy Swiss-Prot
Match: Q9LN01 (Pentatricopeptide repeat-containing protein At1g08070, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-H12 PE=2 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 1.1e-17
Identity = 45/125 (36.00%), Postives = 75/125 (60.00%), Query Frame = 0 

Query: 9   PNRFPFPSVLKACARA---SKGKQVHGLIVKFGFDGDEFVISHLVRMEL----------- 68
           PN + FP VLK+CA++    +G+Q+HG ++K G D D +V + L+ M +           
Sbjct: 132 PNSYTFPFVLKSCAKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKV 191

Query: 69  -DKMRQDRSVLWIMMFDGHVRLGHLKNAKNLFDEMPHRSEVSWNVMISGYSQNGHFMEAV 119
            DK      V +  +  G+   G+++NA+ LFDE+P +  VSWN MISGY++ G++ EA+
Sbjct: 192 FDKSPHRDVVSYTALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEAL 251

[Close]
BLAST of CmoCh08G000620 vs. ExPASy Swiss-Prot
Match: Q9FG16 (Pentatricopeptide repeat-containing protein At5g06540 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H88 PE=3 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 1.7e-15
Identity = 43/124 (34.68%), Postives = 70/124 (56.45%), Query Frame = 0 

Query: 9   PNRFPFPSVLKACARAS---KGKQVHGLIVKFGFDGDEFVISHLVRMELD---------- 68
           P+   FP ++KA +       G+Q H  IV+FGF  D +V + LV M  +          
Sbjct: 115 PDNITFPFLIKASSEMECVLVGEQTHSQIVRFGFQNDVYVENSLVHMYANCGFIAAAGRI 174

Query: 69  --KMRQDRSVLWIMMFDGHVRLGHLKNAKNLFDEMPHRSEVSWNVMISGYSQNGHFMEAV 118
             +M     V W  M  G+ + G ++NA+ +FDEMPHR+  +W++MI+GY++N  F +A+
Sbjct: 175 FGQMGFRDVVSWTSMVAGYCKCGMVENAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAI 234

[Close]
BLAST of CmoCh08G000620 vs. ExPASy Swiss-Prot
Match: Q9SHZ8 (Pentatricopeptide repeat-containing protein At2g22070 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H41 PE=3 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 2.2e-15
Identity = 48/133 (36.09%), Postives = 70/133 (52.63%), Query Frame = 0 

Query: 1   MLCDRHVKPNRFPFPSVLKACARASK---GKQVHGLIVKFGFDGDEFVISHLVRM----- 60
           ML D  + P+RF   SVL ACA   K   GKQ+H  IV  GFD    V++ L+ M     
Sbjct: 269 MLRDSLLSPDRFTLASVLSACANLEKLCIGKQIHSHIVTTGFDISGIVLNALISMYSRCG 328

Query: 61  ------ELDKMRQDRSVL---WIMMFDGHVRLGHLKNAKNLFDEMPHRSEVSWNVMISGY 117
                  L + R  + +    +  + DG+++LG +  AKN+F  +  R  V+W  MI GY
Sbjct: 329 GVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNQAKNIFVSLKDRDVVAWTAMIVGY 388

[Close]
BLAST of CmoCh08G000620 vs. ExPASy TrEMBL
Match: A0A6J1GQB6 (pentatricopeptide repeat-containing protein At5g48910 OS=Cucurbita moschata OX=3662 GN=LOC111456131 PE=3 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 3.8e-42
Identity = 95/149 (63.76%), Postives = 107/149 (71.81%), Query Frame = 0 

Query: 1   MLCDRHVKPNRFPFPSVLKACARASK---GKQVHGLIVKFGFDGDEFVISHLVR------ 60
           MLCD  VKPNRF FPSVLKACARAS+   GKQVHGLIVKFGFDGDEFVIS+LVR      
Sbjct: 113 MLCDGRVKPNRFTFPSVLKACARASRLREGKQVHGLIVKFGFDGDEFVISNLVRMYVMCA 172

Query: 61  ---------------------MELDKMRQDRS-VLWIMMFDGHVRLGHLKNAKNLFDEMP 119
                                ME+DK RQD + VLW +M DGHVRLG  ++A+NLFDEMP
Sbjct: 173 LMEDAYSLFCKSVVDFDGSCQMEVDKRRQDGNVVLWNIMIDGHVRLGDFRSARNLFDEMP 232

[Close]
BLAST of CmoCh08G000620 vs. ExPASy TrEMBL
Match: A0A6J1JUY8 (pentatricopeptide repeat-containing protein At5g48910 OS=Cucurbita maxima OX=3661 GN=LOC111488080 PE=3 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 1.4e-41
Identity = 94/149 (63.09%), Postives = 106/149 (71.14%), Query Frame = 0 

Query: 1   MLCDRHVKPNRFPFPSVLKACARASK---GKQVHGLIVKFGFDGDEFVISHLVR------ 60
           MLCD  VKPNRF FPSVLKACARAS+   GKQVHGLIVKFGFDGDEFVIS+LVR      
Sbjct: 113 MLCDGRVKPNRFTFPSVLKACARASRLQEGKQVHGLIVKFGFDGDEFVISNLVRMYVMCA 172

Query: 61  ---------------------MELDKMRQDRS-VLWIMMFDGHVRLGHLKNAKNLFDEMP 119
                                ME+DK R D + VLW +M DGHVRLG  ++A+NLFDEMP
Sbjct: 173 LMEDAYSLFCKSVVDFDGSCQMEVDKRRHDGNVVLWNIMIDGHVRLGDFRSARNLFDEMP 232

[Close]
BLAST of CmoCh08G000620 vs. ExPASy TrEMBL
Match: A0A6J1DF39 (pentatricopeptide repeat-containing protein At5g48910 OS=Momordica charantia OX=3673 GN=LOC111019844 PE=3 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 1.2e-40
Identity = 93/156 (59.62%), Postives = 107/156 (68.59%), Query Frame = 0 

Query: 1   MLCDRHVKPNRFPFPSVLKACARASK---GKQVHGLIVKFGFDGDEFVISHLVR------ 60
           MLCD  VKPNRF FPSVLKACAR S+   GKQVHG+I+KFGFDGDEFVIS+LVR      
Sbjct: 114 MLCDGRVKPNRFTFPSVLKACARTSRLREGKQVHGMILKFGFDGDEFVISNLVRMYVMCA 173

Query: 61  ---------------------MELDKMRQDRS-VLWIMMFDGHVRLGHLKNAKNLFDEMP 120
                                M +DK R++ + VLW +M DGHVRLG LKNAK LFDEMP
Sbjct: 174 LMEDAYSLFSKNAVNSDGPYQMAVDKRREEGNVVLWNIMIDGHVRLGDLKNAKYLFDEMP 233

Query: 121 HRSEVSWNVMISGYSQNGHFMEAVNMFEEANFESCS 126
            RS VSWNVMISGY+QNGHFMEA+NMF++    + S
Sbjct: 234 QRSVVSWNVMISGYAQNGHFMEAINMFQQMQIANVS 269

[Close]
BLAST of CmoCh08G000620 vs. ExPASy TrEMBL
Match: A0A1S3C6Q9 (pentatricopeptide repeat-containing protein At5g48910 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103497532 PE=3 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 1.4e-39
Identity = 91/149 (61.07%), Postives = 104/149 (69.80%), Query Frame = 0 

Query: 1   MLCDRHVKPNRFPFPSVLKACARASK---GKQVHGLIVKFGFDGDEFVISHLVR------ 60
           MLCD  VKPNRF FPSVLKACARAS+   GKQ+HGLIVKFGF  DEF+IS LVR      
Sbjct: 112 MLCDGRVKPNRFTFPSVLKACARASRLREGKQIHGLIVKFGFHEDEFIISSLVRMYVMCA 171

Query: 61  ---------------------MELDKMRQDRS-VLWIMMFDGHVRLGHLKNAKNLFDEMP 119
                                MELDK +QD + VLW +M DG VRLG +K+AKNLFDEMP
Sbjct: 172 VIEDAYSLFSKNVVDFDGSCQMELDKRKQDGNVVLWNIMIDGQVRLGDIKSAKNLFDEMP 231

[Close]
BLAST of CmoCh08G000620 vs. ExPASy TrEMBL
Match: A0A5A7TFK4 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold124G00730 PE=3 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 1.4e-39
Identity = 91/149 (61.07%), Postives = 104/149 (69.80%), Query Frame = 0 

Query: 1   MLCDRHVKPNRFPFPSVLKACARASK---GKQVHGLIVKFGFDGDEFVISHLVR------ 60
           MLCD  VKPNRF FPSVLKACARAS+   GKQ+HGLIVKFGF  DEF+IS LVR      
Sbjct: 112 MLCDGRVKPNRFTFPSVLKACARASRLREGKQIHGLIVKFGFHEDEFIISSLVRMYVMCA 171

Query: 61  ---------------------MELDKMRQDRS-VLWIMMFDGHVRLGHLKNAKNLFDEMP 119
                                MELDK +QD + VLW +M DG VRLG +K+AKNLFDEMP
Sbjct: 172 VIEDAYSLFSKNVVDFDGSCQMELDKRKQDGNVVLWNIMIDGQVRLGDIKSAKNLFDEMP 231

[Close]
BLAST of CmoCh08G000620 vs. NCBI nr
Match: KAG6592860.1 (Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 232.3 bits (591), Expect = 3.0e-57
Identity = 108/112 (96.43%), Postives = 110/112 (98.21%), Query Frame = 0 

Query: 1   MLCDRHVKPNRFPFPSVLKACARASKGKQVHGLIVKFGFDGDEFVISHLVRMELDKMRQD 60
           MLCDRHVKPNRFPFPSVLKACARASKGKQVHGLI++FGFDGDE V SHLVRMELDKMRQD
Sbjct: 51  MLCDRHVKPNRFPFPSVLKACARASKGKQVHGLILRFGFDGDECVTSHLVRMELDKMRQD 110

Query: 61  RSVLWIMMFDGHVRLGHLKNAKNLFDEMPHRSEVSWNVMISGYSQNGHFMEA 113
           RSVLWIMMFDGHVRLGHLKNAKNLFDEMPHRSEVSWNVMISGYSQNGHFMEA
Sbjct: 111 RSVLWIMMFDGHVRLGHLKNAKNLFDEMPHRSEVSWNVMISGYSQNGHFMEA 162

[Close]
BLAST of CmoCh08G000620 vs. NCBI nr
Match: KAG7014490.1 (Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 181.0 bits (458), Expect = 7.9e-42
Identity = 95/149 (63.76%), Postives = 107/149 (71.81%), Query Frame = 0 

Query: 1   MLCDRHVKPNRFPFPSVLKACARASK---GKQVHGLIVKFGFDGDEFVISHLVR------ 60
           MLCD  VKPNRF FPSVLKACARAS+   GKQVHGLIVKFGFDGDEFVIS+LVR      
Sbjct: 113 MLCDGRVKPNRFTFPSVLKACARASRLREGKQVHGLIVKFGFDGDEFVISNLVRMYVMCA 172

Query: 61  ---------------------MELDKMRQDRS-VLWIMMFDGHVRLGHLKNAKNLFDEMP 119
                                ME+DK RQD + VLW +M DGHVRLG  ++A+NLFDEMP
Sbjct: 173 IMEDAYSLFCKSVVDFDGSCQMEVDKRRQDGNVVLWNIMIDGHVRLGDFRSARNLFDEMP 232

[Close]
BLAST of CmoCh08G000620 vs. NCBI nr
Match: KAG6575967.1 (Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 181.0 bits (458), Expect = 7.9e-42
Identity = 95/149 (63.76%), Postives = 107/149 (71.81%), Query Frame = 0 

Query: 1   MLCDRHVKPNRFPFPSVLKACARASK---GKQVHGLIVKFGFDGDEFVISHLVR------ 60
           MLCD  VKPNRF FPSVLKACARAS+   GKQVHGLIVKFGFDGDEFVIS+LVR      
Sbjct: 113 MLCDGRVKPNRFTFPSVLKACARASRLREGKQVHGLIVKFGFDGDEFVISNLVRMYVMCA 172

Query: 61  ---------------------MELDKMRQDRS-VLWIMMFDGHVRLGHLKNAKNLFDEMP 119
                                ME+DK RQD + VLW +M DGHVRLG  ++A+NLFDEMP
Sbjct: 173 IMEDAYSLFCKSVVDFDGSCQMEVDKRRQDGNVVLWNIMIDGHVRLGDFRSARNLFDEMP 232

[Close]
BLAST of CmoCh08G000620 vs. NCBI nr
Match: XP_022953669.1 (pentatricopeptide repeat-containing protein At5g48910 [Cucurbita moschata] >XP_022953670.1 pentatricopeptide repeat-containing protein At5g48910 [Cucurbita moschata])

HSP 1 Score: 181.0 bits (458), Expect = 7.9e-42
Identity = 95/149 (63.76%), Postives = 107/149 (71.81%), Query Frame = 0 

Query: 1   MLCDRHVKPNRFPFPSVLKACARASK---GKQVHGLIVKFGFDGDEFVISHLVR------ 60
           MLCD  VKPNRF FPSVLKACARAS+   GKQVHGLIVKFGFDGDEFVIS+LVR      
Sbjct: 113 MLCDGRVKPNRFTFPSVLKACARASRLREGKQVHGLIVKFGFDGDEFVISNLVRMYVMCA 172

Query: 61  ---------------------MELDKMRQDRS-VLWIMMFDGHVRLGHLKNAKNLFDEMP 119
                                ME+DK RQD + VLW +M DGHVRLG  ++A+NLFDEMP
Sbjct: 173 LMEDAYSLFCKSVVDFDGSCQMEVDKRRQDGNVVLWNIMIDGHVRLGDFRSARNLFDEMP 232

[Close]
BLAST of CmoCh08G000620 vs. NCBI nr
Match: XP_023548635.1 (pentatricopeptide repeat-containing protein At5g48910 [Cucurbita pepo subsp. pepo] >XP_023548636.1 pentatricopeptide repeat-containing protein At5g48910 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 181.0 bits (458), Expect = 7.9e-42
Identity = 95/149 (63.76%), Postives = 107/149 (71.81%), Query Frame = 0 

Query: 1   MLCDRHVKPNRFPFPSVLKACARASK---GKQVHGLIVKFGFDGDEFVISHLVR------ 60
           MLCD  VKPNRF FPSVLKACARAS+   GKQVHGLIVKFGFDGDEFVIS+LVR      
Sbjct: 113 MLCDGRVKPNRFTFPSVLKACARASRLREGKQVHGLIVKFGFDGDEFVISNLVRMYVMCA 172

Query: 61  ---------------------MELDKMRQDRS-VLWIMMFDGHVRLGHLKNAKNLFDEMP 119
                                ME+DK RQD + VLW +M DGHVRLG  ++A+NLFDEMP
Sbjct: 173 LMEDAYSLFCKSVVDFDGSCQMEVDKRRQDGNVVLWNIMIDGHVRLGDFRSARNLFDEMP 232

[Close]
BLAST of CmoCh08G000620 vs. TAIR 10
Match: AT5G48910.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 132.9 bits (333), Expect = 2.3e-31
Identity = 72/147 (48.98%), Postives = 91/147 (61.90%), Query Frame = 0 

Query: 1   MLCDRHVKPNRFPFPSVLKACARASK---GKQVHGLIVKFGFDGDEFVISHLVRMEL--- 60
           M+ D  V+PNRF FPSVLKACA+  K   GKQ+HGL +K+GF GDEFV+S+LVRM +   
Sbjct: 118 MMSDEFVEPNRFTFPSVLKACAKTGKIQEGKQIHGLALKYGFGGDEFVMSNLVRMYVMCG 177

Query: 61  ----------------------DKMRQD-RSVLWIMMFDGHVRLGHLKNAKNLFDEMPHR 119
                                 D+ ++D   VLW +M DG++RLG  K A+ LFD+M  R
Sbjct: 178 FMKDARVLFYKNIIEKDMVVMTDRRKRDGEIVLWNVMIDGYMRLGDCKAARMLFDKMRQR 237

[Close]
BLAST of CmoCh08G000620 vs. TAIR 10
Match: AT2G42920.1 (Pentatricopeptide repeat (PPR-like) superfamily protein )

HSP 1 Score: 94.7 bits (234), Expect = 6.9e-20
Identity = 53/134 (39.55%), Postives = 74/134 (55.22%), Query Frame = 0 

Query: 1   MLCDR-HVKPNRFPFPSVLKACAR---ASKGKQVHGLIVKFGFDGDEFVISHLVRMELD- 60
           MLC    VKP R  +PSV KA  R   A  G+Q+HG+++K G + D F+ + ++ M +  
Sbjct: 115 MLCSSPSVKPQRLTYPSVFKAYGRLGQARDGRQLHGMVIKEGLEDDSFIRNTMLHMYVTC 174

Query: 61  -----------KMRQDRSVLWIMMFDGHVRLGHLKNAKNLFDEMPHRSEVSWNVMISGYS 119
                       M     V W  M  G  + G +  A+NLFDEMP R+ VSWN MISG+ 
Sbjct: 175 GCLIEAWRIFLGMIGFDVVAWNSMIMGFAKCGLIDQAQNLFDEMPQRNGVSWNSMISGFV 234

[Close]
BLAST of CmoCh08G000620 vs. TAIR 10
Match: AT1G08070.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 91.3 bits (225), Expect = 7.6e-19
Identity = 45/125 (36.00%), Postives = 75/125 (60.00%), Query Frame = 0 

Query: 9   PNRFPFPSVLKACARA---SKGKQVHGLIVKFGFDGDEFVISHLVRMEL----------- 68
           PN + FP VLK+CA++    +G+Q+HG ++K G D D +V + L+ M +           
Sbjct: 132 PNSYTFPFVLKSCAKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKV 191

Query: 69  -DKMRQDRSVLWIMMFDGHVRLGHLKNAKNLFDEMPHRSEVSWNVMISGYSQNGHFMEAV 119
            DK      V +  +  G+   G+++NA+ LFDE+P +  VSWN MISGY++ G++ EA+
Sbjct: 192 FDKSPHRDVVSYTALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEAL 251

[Close]
BLAST of CmoCh08G000620 vs. TAIR 10
Match: AT5G06540.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 84.0 bits (206), Expect = 1.2e-16
Identity = 43/124 (34.68%), Postives = 70/124 (56.45%), Query Frame = 0 

Query: 9   PNRFPFPSVLKACARAS---KGKQVHGLIVKFGFDGDEFVISHLVRMELD---------- 68
           P+   FP ++KA +       G+Q H  IV+FGF  D +V + LV M  +          
Sbjct: 115 PDNITFPFLIKASSEMECVLVGEQTHSQIVRFGFQNDVYVENSLVHMYANCGFIAAAGRI 174

Query: 69  --KMRQDRSVLWIMMFDGHVRLGHLKNAKNLFDEMPHRSEVSWNVMISGYSQNGHFMEAV 118
             +M     V W  M  G+ + G ++NA+ +FDEMPHR+  +W++MI+GY++N  F +A+
Sbjct: 175 FGQMGFRDVVSWTSMVAGYCKCGMVENAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAI 234

[Close]
BLAST of CmoCh08G000620 vs. TAIR 10
Match: AT2G22070.1 (pentatricopeptide (PPR) repeat-containing protein )

HSP 1 Score: 83.6 bits (205), Expect = 1.6e-16
Identity = 48/133 (36.09%), Postives = 70/133 (52.63%), Query Frame = 0 

Query: 1   MLCDRHVKPNRFPFPSVLKACARASK---GKQVHGLIVKFGFDGDEFVISHLVRM----- 60
           ML D  + P+RF   SVL ACA   K   GKQ+H  IV  GFD    V++ L+ M     
Sbjct: 269 MLRDSLLSPDRFTLASVLSACANLEKLCIGKQIHSHIVTTGFDISGIVLNALISMYSRCG 328

Query: 61  ------ELDKMRQDRSVL---WIMMFDGHVRLGHLKNAKNLFDEMPHRSEVSWNVMISGY 117
                  L + R  + +    +  + DG+++LG +  AKN+F  +  R  V+W  MI GY
Sbjct: 329 GVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNQAKNIFVSLKDRDVVAWTAMIVGY 388

The following BLAST results are available for this feature:
BLAST of CmoCh08G000620 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9FI803.2e-3048.98Pentatricopeptide repeat-containing protein At5g48910 OS=Arabidopsis thaliana OX... [more]
Q9SJG69.7e-1939.55Pentatricopeptide repeat-containing protein At2g42920, chloroplastic OS=Arabidop... [more]
Q9LN011.1e-1736.00Pentatricopeptide repeat-containing protein At1g08070, chloroplastic OS=Arabidop... [more]
Q9FG161.7e-1534.68Pentatricopeptide repeat-containing protein At5g06540 OS=Arabidopsis thaliana OX... [more]
Q9SHZ82.2e-1536.09Pentatricopeptide repeat-containing protein At2g22070 OS=Arabidopsis thaliana OX... [more]
BLAST of CmoCh08G000620 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1GQB63.8e-4263.76pentatricopeptide repeat-containing protein At5g48910 OS=Cucurbita moschata OX=3... [more]
A0A6J1JUY81.4e-4163.09pentatricopeptide repeat-containing protein At5g48910 OS=Cucurbita maxima OX=366... [more]
A0A6J1DF391.2e-4059.62pentatricopeptide repeat-containing protein At5g48910 OS=Momordica charantia OX=... [more]
A0A1S3C6Q91.4e-3961.07pentatricopeptide repeat-containing protein At5g48910 isoform X2 OS=Cucumis melo... [more]
A0A5A7TFK41.4e-3961.07Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946... [more]
BLAST of CmoCh08G000620 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6592860.13.0e-5796.43Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma sub... [more]
KAG7014490.17.9e-4263.76Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma sub... [more]
KAG6575967.17.9e-4263.76Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma sub... [more]
XP_022953669.17.9e-4263.76pentatricopeptide repeat-containing protein At5g48910 [Cucurbita moschata] >XP_0... [more]
XP_023548635.17.9e-4263.76pentatricopeptide repeat-containing protein At5g48910 [Cucurbita pepo subsp. pep... [more]
BLAST of CmoCh08G000620 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G48910.12.3e-3148.98Pentatricopeptide repeat (PPR) superfamily protein [more]
AT2G42920.16.9e-2039.55Pentatricopeptide repeat (PPR-like) superfamily protein [more]
AT1G08070.17.6e-1936.00Tetratricopeptide repeat (TPR)-like superfamily protein [more]
AT5G06540.11.2e-1634.68Pentatricopeptide repeat (PPR) superfamily protein [more]
AT2G22070.11.6e-1636.09pentatricopeptide (PPR) repeat-containing protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 155..158
NoneNo IPR availablePANTHERPTHR47924PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEINcoord: 5..124
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 1..151
e-value: 4.7E-16
score: 61.0
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 94..118
e-value: 1.6E-7
score: 31.1
coord: 63..89
e-value: 0.0022
score: 18.1
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 94..118
e-value: 5.9E-6
score: 24.1
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 92..126
score: 9.920034

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh08G000620.1CmoCh08G000620.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding