CmoCh08G000490 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh08G000490
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Cupin_3 domain-containing protein
Location	Cmo_Chr08: 269772 .. 270535 (+)
RNA-Seq Expression	CmoCh08G000490
Synteny	CmoCh08G000490

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GATGAAGAAAAGAAGTAAAACCCTCCTTATTTGTCTCTCTATAAATCTCCCACAACCTTCTTCCTTTTCTCATTATATTCCATTCAAGATCAAAAGATTCCTTTTCTCTTCTCTTTCTTGTTCTTTCTCTATAAAAAAAAAATGGCCAATGAAGAAGGAAACAGTAACAATCCTTCAACAAACAACCTCAGAATCATCGTAGAAAGGAACCCTTCTCAAGCCAAGCTTTCTCTGCTCAACATCCAGAGCTGGCCAAAGTAAGTATATTGTAATCTATCGGTTTAAGCTTTCGCGTAAGTTCGAGCCTTTAGCCTTTGGGTCTGAGCTGGGGTGGGTGATGGTTGAGTAATTTTTGTGTAGGTGGGGATGCTCGGCGGGGAAATACCAGCTGAAGTTCGAGGCAGAAGAGACGTGCTACTTGGTGAAGGGAAAAGTGAAGGCTTATGCCAAAGGATCGGCTGAGACTGAATATACAGAATTCGGGGCTGGTGATTTGGTCACCATTCCTAAAGGCCTTAGCTGCACTTGGGATGTTTCTGTTGCTGTTGATAAGTTCTACAAGTTTGAATCTCCATCTTCATCTTAATTTGCTATTACCTCCATTTTCATTCTTTCCCCCTTTTTTCTAATTTCTACTCGTCGTGTAAATATATTCTTTTTATTTGTGCCCTTATTTCGTCGTGTGGTCGTCCTCTTCTCTCGATAATGGAGGAGAAACGAGTTAGACAATTAACCAGTAAAAGTATTACTCAATTGACATAAAA

mRNA sequence

GATGAAGAAAAGAAGTAAAACCCTCCTTATTTGTCTCTCTATAAATCTCCCACAACCTTCTTCCTTTTCTCATTATATTCCATTCAAGATCAAAAGATTCCTTTTCTCTTCTCTTTCTTGTTCTTTCTCTATAAAAAAAAAATGGCCAATGAAGAAGGAAACAGTAACAATCCTTCAACAAACAACCTCAGAATCATCGTAGAAAGGAACCCTTCTCAAGCCAAGCTTTCTCTGCTCAACATCCAGAGCTGGCCAAAGTGGGGATGCTCGGCGGGGAAATACCAGCTGAAGTTCGAGGCAGAAGAGACGTGCTACTTGGTGAAGGGAAAAGTGAAGGCTTATGCCAAAGGATCGGCTGAGACTGAATATACAGAATTCGGGGCTGGTGATTTGGTCACCATTCCTAAAGGCCTTAGCTGCACTTGGGATGTTTCTGTTGCTGTTGATAAGTTCTACAAGTTTGAATCTCCATCTTCATCTTAATTTGCTATTACCTCCATTTTCATTCTTTCCCCCTTTTTTCTAATTTCTACTCGTCGTGTAAATATATTCTTTTTATTTGTGCCCTTATTTCGTCGTGTGGTCGTCCTCTTCTCTCGATAATGGAGGAGAAACGAGTTAGACAATTAACCAGTAAAAGTATTACTCAATTGACATAAAA

Coding sequence (CDS)

ATGGCCAATGAAGAAGGAAACAGTAACAATCCTTCAACAAACAACCTCAGAATCATCGTAGAAAGGAACCCTTCTCAAGCCAAGCTTTCTCTGCTCAACATCCAGAGCTGGCCAAAGTGGGGATGCTCGGCGGGGAAATACCAGCTGAAGTTCGAGGCAGAAGAGACGTGCTACTTGGTGAAGGGAAAAGTGAAGGCTTATGCCAAAGGATCGGCTGAGACTGAATATACAGAATTCGGGGCTGGTGATTTGGTCACCATTCCTAAAGGCCTTAGCTGCACTTGGGATGTTTCTGTTGCTGTTGATAAGTTCTACAAGTTTGAATCTCCATCTTCATCTTAA

Protein sequence

MANEEGNSNNPSTNNLRIIVERNPSQAKLSLLNIQSWPKWGCSAGKYQLKFEAEETCYLVKGKVKAYAKGSAETEYTEFGAGDLVTIPKGLSCTWDVSVAVDKFYKFESPSSS

Homology

[Close]

BLAST of CmoCh08G000490 vs. ExPASy TrEMBL
Match: A0A6J1H6X6 (uncharacterized protein LOC111460998 OS=Cucurbita moschata OX=3662 GN=LOC111460998 PE=4 SV=1)

HSP 1 Score: 231.1 bits (588), Expect = 2.3e-57
Identity = 113/113 (100.00%), Postives = 113/113 (100.00%), Query Frame = 0


Query: 1   MANEEGNSNNPSTNNLRIIVERNPSQAKLSLLNIQSWPKWGCSAGKYQLKFEAEETCYLV 60
           MANEEGNSNNPSTNNLRIIVERNPSQAKLSLLNIQSWPKWGCSAGKYQLKFEAEETCYLV
Sbjct: 1   MANEEGNSNNPSTNNLRIIVERNPSQAKLSLLNIQSWPKWGCSAGKYQLKFEAEETCYLV 60

Query: 61  KGKVKAYAKGSAETEYTEFGAGDLVTIPKGLSCTWDVSVAVDKFYKFESPSSS 114
           KGKVKAYAKGSAETEYTEFGAGDLVTIPKGLSCTWDVSVAVDKFYKFESPSSS
Sbjct: 61  KGKVKAYAKGSAETEYTEFGAGDLVTIPKGLSCTWDVSVAVDKFYKFESPSSS 113

[Close]

BLAST of CmoCh08G000490 vs. ExPASy TrEMBL
Match: A0A6J1KU03 (uncharacterized protein LOC111498188 OS=Cucurbita maxima OX=3661 GN=LOC111498188 PE=4 SV=1)

HSP 1 Score: 229.9 bits (585), Expect = 5.1e-57
Identity = 112/113 (99.12%), Postives = 113/113 (100.00%), Query Frame = 0


Query: 1   MANEEGNSNNPSTNNLRIIVERNPSQAKLSLLNIQSWPKWGCSAGKYQLKFEAEETCYLV 60
           MANEEGNSNNPSTNNLRIIVERNPS+AKLSLLNIQSWPKWGCSAGKYQLKFEAEETCYLV
Sbjct: 1   MANEEGNSNNPSTNNLRIIVERNPSEAKLSLLNIQSWPKWGCSAGKYQLKFEAEETCYLV 60

Query: 61  KGKVKAYAKGSAETEYTEFGAGDLVTIPKGLSCTWDVSVAVDKFYKFESPSSS 114
           KGKVKAYAKGSAETEYTEFGAGDLVTIPKGLSCTWDVSVAVDKFYKFESPSSS
Sbjct: 61  KGKVKAYAKGSAETEYTEFGAGDLVTIPKGLSCTWDVSVAVDKFYKFESPSSS 113

[Close]

BLAST of CmoCh08G000490 vs. ExPASy TrEMBL
Match: A0A1S3CBJ5 (uncharacterized protein LOC103498932 OS=Cucumis melo OX=3656 GN=LOC103498932 PE=4 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 3.2e-43
Identity = 99/125 (79.20%), Postives = 100/125 (80.00%), Query Frame = 0


Query: 1   MANEEG----NSNNPSTNN-LRIIVERNPSQAKLSLLNIQSWPKWGCSAGKYQLKFEAEE 60
           MANEEG    N NNPSTNN L+IIVERNPSQAKLS LNI  WPKWGCSAGKYQLKFEAEE
Sbjct: 1   MANEEGGNNNNHNNPSTNNSLKIIVERNPSQAKLSQLNIHRWPKWGCSAGKYQLKFEAEE 60

Query: 61  TCYLVKGKVKAYAKG---------SAETEYTEFGAGDLVTIPKGLSCTWDVSVAVDKFYK 112
           TCYLVKGKVKAY KG         S   EY EFGAGDLV IPKGLSCTWDVSVAVDKFYK
Sbjct: 61  TCYLVKGKVKAYPKGIDSSSSSSSSCCEEYIEFGAGDLVIIPKGLSCTWDVSVAVDKFYK 120

[Close]

BLAST of CmoCh08G000490 vs. ExPASy TrEMBL
Match: A0A7N2MLC2 (Cupin_3 domain-containing protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 2.5e-40
Identity = 84/106 (79.25%), Postives = 96/106 (90.57%), Query Frame = 0


Query: 8   SNNPSTNNLRIIVERNPSQAKLSLLNIQSWPKWGCSAGKYQLKFEAEETCYLVKGKVKAY 67
           SN+ S++NLRI+VERNPS+++LS LNI+ WPKWGCS GKYQLKF+AEE CYLVKGKVKAY
Sbjct: 5   SNSSSSHNLRILVERNPSESQLSELNIKGWPKWGCSPGKYQLKFDAEEICYLVKGKVKAY 64

Query: 68  AKGSAETEYTEFGAGDLVTIPKGLSCTWDVSVAVDKFYKFESPSSS 114
            KGS  +E+ EFGAGDLVTIPKGLSCTWDVSVAVDK+YKFES SSS
Sbjct: 65  PKGS--SEFVEFGAGDLVTIPKGLSCTWDVSVAVDKYYKFESTSSS 108

[Close]

BLAST of CmoCh08G000490 vs. ExPASy TrEMBL
Match: A0A444YMD7 (Cupin_3 domain-containing protein OS=Arachis hypogaea OX=3818 GN=Ahy_A06g027816 PE=4 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 7.4e-40
Identity = 85/109 (77.98%), Postives = 97/109 (88.99%), Query Frame = 0


Query: 5   EGNSNNPSTNNLRIIVERNPSQAKLSLLNIQSWPKWGCSAGKYQLKFEAEETCYLVKGKV 64
           E NS+N  +NNLRI +ERNPSQ++LS LNI+ WPKWGCS GKYQLKF+AEETCYL+KGKV
Sbjct: 3   EDNSSN--SNNLRITIERNPSQSRLSELNIKCWPKWGCSPGKYQLKFDAEETCYLLKGKV 62

Query: 65  KAYAKGSAETEYTEFGAGDLVTIPKGLSCTWDVSVAVDKFYKFESPSSS 114
           KAY KGS  +++ EFGAGDLVTIPKGLSCTWDVSVAVDK+YKFES SSS
Sbjct: 63  KAYPKGS--SDFVEFGAGDLVTIPKGLSCTWDVSVAVDKYYKFESESSS 107

[Close]

BLAST of CmoCh08G000490 vs. NCBI nr
Match: XP_022960185.1 (uncharacterized protein LOC111460998 [Cucurbita moschata] >XP_022960186.1 uncharacterized protein LOC111460998 [Cucurbita moschata] >XP_023513548.1 uncharacterized protein LOC111778119 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 231.1 bits (588), Expect = 4.7e-57
Identity = 113/113 (100.00%), Postives = 113/113 (100.00%), Query Frame = 0


Query: 1   MANEEGNSNNPSTNNLRIIVERNPSQAKLSLLNIQSWPKWGCSAGKYQLKFEAEETCYLV 60
           MANEEGNSNNPSTNNLRIIVERNPSQAKLSLLNIQSWPKWGCSAGKYQLKFEAEETCYLV
Sbjct: 1   MANEEGNSNNPSTNNLRIIVERNPSQAKLSLLNIQSWPKWGCSAGKYQLKFEAEETCYLV 60

Query: 61  KGKVKAYAKGSAETEYTEFGAGDLVTIPKGLSCTWDVSVAVDKFYKFESPSSS 114
           KGKVKAYAKGSAETEYTEFGAGDLVTIPKGLSCTWDVSVAVDKFYKFESPSSS
Sbjct: 61  KGKVKAYAKGSAETEYTEFGAGDLVTIPKGLSCTWDVSVAVDKFYKFESPSSS 113

[Close]

BLAST of CmoCh08G000490 vs. NCBI nr
Match: KAG7025258.1 (hypothetical protein SDJN02_11753 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 230.3 bits (586), Expect = 8.1e-57
Identity = 112/113 (99.12%), Postives = 113/113 (100.00%), Query Frame = 0


Query: 1   MANEEGNSNNPSTNNLRIIVERNPSQAKLSLLNIQSWPKWGCSAGKYQLKFEAEETCYLV 60
           MANEEGNSNNPSTNNLRIIVERNPSQAKLS+LNIQSWPKWGCSAGKYQLKFEAEETCYLV
Sbjct: 1   MANEEGNSNNPSTNNLRIIVERNPSQAKLSMLNIQSWPKWGCSAGKYQLKFEAEETCYLV 60

Query: 61  KGKVKAYAKGSAETEYTEFGAGDLVTIPKGLSCTWDVSVAVDKFYKFESPSSS 114
           KGKVKAYAKGSAETEYTEFGAGDLVTIPKGLSCTWDVSVAVDKFYKFESPSSS
Sbjct: 61  KGKVKAYAKGSAETEYTEFGAGDLVTIPKGLSCTWDVSVAVDKFYKFESPSSS 113

[Close]

BLAST of CmoCh08G000490 vs. NCBI nr
Match: XP_023005099.1 (uncharacterized protein LOC111498188 [Cucurbita maxima] >XP_023005100.1 uncharacterized protein LOC111498188 [Cucurbita maxima] >XP_023005101.1 uncharacterized protein LOC111498188 [Cucurbita maxima])

HSP 1 Score: 229.9 bits (585), Expect = 1.1e-56
Identity = 112/113 (99.12%), Postives = 113/113 (100.00%), Query Frame = 0


Query: 1   MANEEGNSNNPSTNNLRIIVERNPSQAKLSLLNIQSWPKWGCSAGKYQLKFEAEETCYLV 60
           MANEEGNSNNPSTNNLRIIVERNPS+AKLSLLNIQSWPKWGCSAGKYQLKFEAEETCYLV
Sbjct: 1   MANEEGNSNNPSTNNLRIIVERNPSEAKLSLLNIQSWPKWGCSAGKYQLKFEAEETCYLV 60

Query: 61  KGKVKAYAKGSAETEYTEFGAGDLVTIPKGLSCTWDVSVAVDKFYKFESPSSS 114
           KGKVKAYAKGSAETEYTEFGAGDLVTIPKGLSCTWDVSVAVDKFYKFESPSSS
Sbjct: 61  KGKVKAYAKGSAETEYTEFGAGDLVTIPKGLSCTWDVSVAVDKFYKFESPSSS 113

[Close]

BLAST of CmoCh08G000490 vs. NCBI nr
Match: KAG6592849.1 (hypothetical protein SDJN03_12325, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 229.9 bits (585), Expect = 1.1e-56
Identity = 111/113 (98.23%), Postives = 113/113 (100.00%), Query Frame = 0


Query: 1   MANEEGNSNNPSTNNLRIIVERNPSQAKLSLLNIQSWPKWGCSAGKYQLKFEAEETCYLV 60
           MANEEGNSNNPSTNNLRII+ERNPSQAKLS+LNIQSWPKWGCSAGKYQLKFEAEETCYLV
Sbjct: 1   MANEEGNSNNPSTNNLRIIIERNPSQAKLSMLNIQSWPKWGCSAGKYQLKFEAEETCYLV 60

Query: 61  KGKVKAYAKGSAETEYTEFGAGDLVTIPKGLSCTWDVSVAVDKFYKFESPSSS 114
           KGKVKAYAKGSAETEYTEFGAGDLVTIPKGLSCTWDVSVAVDKFYKFESPSSS
Sbjct: 61  KGKVKAYAKGSAETEYTEFGAGDLVTIPKGLSCTWDVSVAVDKFYKFESPSSS 113

[Close]

BLAST of CmoCh08G000490 vs. NCBI nr
Match: XP_038906875.1 (uncharacterized protein LOC120092760 [Benincasa hispida])

HSP 1 Score: 187.2 bits (474), Expect = 7.8e-44
Identity = 97/119 (81.51%), Postives = 100/119 (84.03%), Query Frame = 0


Query: 1   MAN--EEGNSNNPSTNNLRIIVERNPSQAKLSLLNIQSWPKWGCSAGKYQLKFEAEETCY 60
           MAN  EEGN N  + NNL+IIVERNPSQAKLS LNI  WPKWGCSAGKYQLKFEAEETCY
Sbjct: 1   MANNEEEGNKNPSTNNNLKIIVERNPSQAKLSQLNIHGWPKWGCSAGKYQLKFEAEETCY 60

Query: 61  LVKGKVKAYAKG------SAETEYTEFGAGDLVTIPKGLSCTWDVSVAVDKFYKFESPS 112
           LVKGKVKAY KG      S+  EYTEFGAGDLVTIPKGLSCTWDVSVAVDKFYKFES S
Sbjct: 61  LVKGKVKAYPKGIDSSSSSSCEEYTEFGAGDLVTIPKGLSCTWDVSVAVDKFYKFESQS 119

[Close]

BLAST of CmoCh08G000490 vs. TAIR 10
Match: AT3G04300.1 (RmlC-like cupins superfamily protein )

HSP 1 Score: 141.4 bits (355), Expect = 4.6e-34
Identity = 64/97 (65.98%), Postives = 75/97 (77.32%), Query Frame = 0


Query: 16  LRIIVERNPSQAKLSLLNIQSWPKWGCSAGKYQLKFEAEETCYLVKGKVKAYAKGSAETE 75
           + I++E NPS  +LS L + SWPKW C  GKY L FE  ETCYLVKGKVK Y KGS  +E
Sbjct: 1   MNIVIENNPSSRRLSDLGVMSWPKWSCQPGKYALVFEERETCYLVKGKVKVYPKGS--SE 60

Query: 76  YTEFGAGDLVTIPKGLSCTWDVSVAVDKFYKFESPSS 113
           + EFGAGDLVTIPKGLSCTWDVS+ +DK YKF+ P+S
Sbjct: 61  FVEFGAGDLVTIPKGLSCTWDVSLFIDKHYKFDPPTS 95

[Close]

BLAST of CmoCh08G000490 vs. TAIR 10
Match: AT4G28703.1 (RmlC-like cupins superfamily protein )

HSP 1 Score: 135.2 bits (339), Expect = 3.3e-32
Identity = 66/102 (64.71%), Postives = 77/102 (75.49%), Query Frame = 0


Query: 15  NLRIIVERNPSQAKLSLLNIQSWPKWGCSAGKYQLKFEAEETCYLVKGKVKAYAK----- 74
           N RIIVE+NPSQA+L  L  +SWPKWGCS GKY LK+EAEE CY+++GKVK Y K     
Sbjct: 5   NPRIIVEQNPSQARLDELKFKSWPKWGCSPGKYHLKYEAEEICYILRGKVKVYPKPPPSS 64

Query: 75  -GSAETEY-TEFGAGDLVTIPKGLSCTWDVSVAVDKFYKFES 110
              AE E+  EFGAGD+VT PKGLSCTWDVS++VDK Y F S
Sbjct: 65  SSDAEVEWCVEFGAGDIVTFPKGLSCTWDVSLSVDKHYIFLS 106

[Close]

BLAST of CmoCh08G000490 vs. TAIR 10
Match: AT4G10300.1 (RmlC-like cupins superfamily protein )

HSP 1 Score: 120.2 bits (300), Expect = 1.1e-27
Identity = 55/97 (56.70%), Postives = 69/97 (71.13%), Query Frame = 0


Query: 12  STNNLRIIVERNPSQAKLSLLNIQSWPKWGCSAGKYQLKFEAEETCYLVKGKVKAYAKGS 71
           ST  L I +E+NP ++KL+ L ++SWPKWGC   K+   + A+ETCYL++GKVK Y  GS
Sbjct: 40  STEKLGITIEKNPPESKLTQLGVRSWPKWGCPPSKFPWTYSAKETCYLLQGKVKVYPNGS 99

Query: 72  AETEYTEFGAGDLVTIPKGLSCTWDVSVAVDKFYKFE 109
              E  E  AGD V  PKG+SCTWDVSVAVDK Y+FE
Sbjct: 100 --DEGVEIEAGDFVVFPKGMSCTWDVSVAVDKHYQFE 134

The following BLAST results are available for this feature:

BLAST of CmoCh08G000490 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh08G000490 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1H6X6	2.3e-57	100.00	uncharacterized protein LOC111460998 OS=Cucurbita moschata OX=3662 GN=LOC1114609...	[more]
A0A6J1KU03	5.1e-57	99.12	uncharacterized protein LOC111498188 OS=Cucurbita maxima OX=3661 GN=LOC111498188...	[more]
A0A1S3CBJ5	3.2e-43	79.20	uncharacterized protein LOC103498932 OS=Cucumis melo OX=3656 GN=LOC103498932 PE=...	[more]
A0A7N2MLC2	2.5e-40	79.25	Cupin_3 domain-containing protein OS=Quercus lobata OX=97700 PE=4 SV=1	[more]
A0A444YMD7	7.4e-40	77.98	Cupin_3 domain-containing protein OS=Arachis hypogaea OX=3818 GN=Ahy_A06g027816 ...	[more]

BLAST of CmoCh08G000490 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022960185.1	4.7e-57	100.00	uncharacterized protein LOC111460998 [Cucurbita moschata] >XP_022960186.1 unchar...	[more]
KAG7025258.1	8.1e-57	99.12	hypothetical protein SDJN02_11753 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_023005099.1	1.1e-56	99.12	uncharacterized protein LOC111498188 [Cucurbita maxima] >XP_023005100.1 uncharac...	[more]
KAG6592849.1	1.1e-56	98.23	hypothetical protein SDJN03_12325, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_038906875.1	7.8e-44	81.51	uncharacterized protein LOC120092760 [Benincasa hispida]	[more]

BLAST of CmoCh08G000490 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G04300.1	4.6e-34	65.98	RmlC-like cupins superfamily protein	[more]
AT4G28703.1	3.3e-32	64.71	RmlC-like cupins superfamily protein	[more]
AT4G10300.1	1.1e-27	56.70	RmlC-like cupins superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008579	(S)-ureidoglycine aminohydrolase, cupin-3 domain	PFAM	PF05899	Cupin_3	coord: 32..105 e-value: 3.6E-26 score: 90.6
IPR014710	RmlC-like jelly roll fold	GENE3D	2.60.120.10	Jelly Rolls	coord: 7..107 e-value: 7.4E-33 score: 114.2
None	No IPR available	PANTHER	PTHR33271:SF3	OS02G0620400 PROTEIN	coord: 1..110
None	No IPR available	PANTHER	PTHR33271	OS04G0445200 PROTEIN	coord: 1..110
None	No IPR available	CDD	cd02227	cupin_TM1112-like	coord: 36..107 e-value: 3.71947E-27 score: 93.0287
IPR011051	RmlC-like cupin domain superfamily	SUPERFAMILY	51182	RmlC-like cupins	coord: 33..105

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh08G000490.1	CmoCh08G000490.1	mRNA