CmoCh07G014240 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh07G014240
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	30S ribosomal protein S11, chloroplastic
Location	Cmo_Chr07: 8192214 .. 8198215 (+)
RNA-Seq Expression	CmoCh07G014240
Synteny	CmoCh07G014240

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAACAAGCACAAGTCAAGATAAAGGGCTCTGGTCTTGGAAGAGATGCAGTGTTAAGAGCTATTCATAGAAGCGATATACTCTTAAGTTTCATACGGGATGTAACCCCTATGCCACATAATGGTTGTAGGCCCCCGAAAAAACGACGTGTAAAAATAAACAATGAAGAGAAATTTCACCTGTCAAACTATATCTCTCTTGAAAGACAATCCCACAAGAGTTTCATTGTGAGTCTAAACTCAATTGTTATACCTAACACATTTTTTGAAACTTTATCCAAAGGAGAATGGCAGGATGATAAAAAAGAAGAAATGTCTACTTTAGAAAATAATAACGCGTGGGAAGTTGTGTATAGGCCAAAAGGAAAAAATATATAGTTGGGTGTAAGTGGCTTTTCAGAGTAAAGTACAAGGCTGATGGAACGTTGGAAAGGTATAAGGCAAGATTAGTAGCTAAGAGATACACTCAAACTTACAATATAGATTACCATGAGACATTTGCCCCAATTGCAAAAATATTGTTATACTTAGATGCCAACTTAAATTGGCAACTTTCACAGTATGATATGAAGAATGCATTTGCTAAATGAGGAAATCTACATGAGCATTCCTCCAAGATTTGAAAGCTCATGAGGTAAGGTATGCAAATTGAGAAAGATTGTATGGCCTAAAACAATCACCAAAGGGCGTGGTTTGGAAAATTCATAAAGGTAACGAAGGAATGTGGGTATAAGCAAAATCAAGGAGATCACACTCTTTTTATCAAGTATTCAGAATCAAGGGAATTTAGTGTTCTAGTGTATGGAGATGACATCATAGTCATTGAAGATAATGAAGAAGAAAAACTTAAACTAAGAAAAAAATTTGATGAACGAATTTGCAATCTTAGAAGGCTAAAGTACTTCTTCTATATTGAAATAGCGTACTCAACTCAAAGTATTTTCATATCACAATAGAAATATGTGATGGATTTATTGATGGAAATGAGAAAAAACAGATGTATCCACATCAGAAATTGGGAAAGTCAAAAGAAGAACCTATGGTGAACAAAGAAATGTACCCGAGGCTAGTAGGGAAGCTTATATATCCAGCTCACATTTGACCAGACATGGCATACTCAGTAAGTGTAATCAGCCAATTTATGCATCATCTGTGGGAGTCTCACCTTCAGGCAGCTTATAGAGAGTATTACGTATAGAGAGTACTACGTTACTTGAAATGAGCTCCAAGAAAAAAAAAATATTTAAACAGAACAATTCTCTTGCATTGGAAGCTTACACCAATGTTGACTATGTTGGATCAATAATGGACAAAAGATCTACTATGGGGCATTGTACATTTTTTTTAGGTAATTTAGTACCATGGAGAAGCAAAGAAGCAAAATGTGGTGGCTAGATCATCTGTCAAACTACAATTCAGAGCTATTGCACAAGAGTTATGTGAACTTTTATGGTTGAAGATAATCCTTGATGACCTACAAATGAAGGAAAAAGGTCTGATAAAGTTGTATTGTGACAACAAATCTATAACACCTGGAATTTTAAGAAAATAAATAACAGATTTTTTTTCTAAAAAGATTTTAAAAAAGAATGAAGAAGAAAAGGAAAGAAAGTAGAATGGCACACACGCAAGTTAGAGAAGATGACTGTACAATCAAAGATTAGTTTCTTGACTTACATTCCTTTCTTTTTTTAACGAATTTGAAGATAGCCAAATTTCACTAGTGTTATTCTTTTGACTTAATGTAGGGCATATTGAGGAATTTTAGAGAGACTTGAAATATCCTTAAAGACCCGAAACAAATTTGAGAAGTCTACAATCAAGTAAGTAACTATATGGAGCGAGTTTCTCAGAAATACTTGTAGGAGTCGATTAGGAGCAGTGATCGAGTATTATGTTTAGAAGCCTAATTTGACCTAGCCTCAGGATAATTTTGTTTAGATAATGTGAACATTTTACAACTTAGTCCTATTTACAGTTATATAGCTTCAGCACATGTGACTTGTGAACTTTGATAGATCCTTAGGCTTTTATGCTTTCCAGAATGCTGAGGTTGGATTATTATCACGTAATGAGCATGACGAGCATGTTGTATGCTTTTATAAGTTATTAAGCATGATTTAGGGTTTGGATAGCCTATTTGATATGAACCAAGAGACATCAATCATACAATATACTTCAATGAAGATGTGAAGAAAAGGTTGTCAAAATTATCAAAAGATGTTTCTATTCATGCTACATTGAAGAAGAATAAAGTTTGATTGTTGTAAATTTTGGGTGGGTTACAATTTAGAGTAATTTAGAGTTATTGTATTTTAAGACATGTTATTTACTTTAGGTTACATTTAAGACATGAATGTTACGGAATGCCTTTAATAGTTTCATTTTGAGGCTATATAAAGCCATGTATGTTATATTTGTAAGCAGACTTGAAAAATATAGTAAAAGAAGCATTTGTGCTCTTTCTTTAGCCAATGGCTAAGTTTCTTTGCAATTCTATGTAGTTTAAGTTGCATGTAGAATCATTCAAGCTTGACATGATCAATCTTGTTTGTGGAGTGATTCGAATCTCAAGCAAGTGTTCTTGCCTTGAGATATTTGATCAACAAGAATCATTCAAACTAGACATGATCGATCTTGCTTGTGGAGTGATTCGAATCTCAAACAATGTTCTTGCCTTGAGATATTCGATCAACAAGGTAATCTGAATCTTATAATCCTTGTATTGATTCCTTATCTTATCACTATTATTGGCCAGTCATGAATTTGGACTATCGCTATGTGTCATAAAGTACTAGTTATGATTTCCATAGACTATGAGTTACTATTTCACGTATTTTGGTCCTAGCACCTAGTCATGAGTTCCGTAGCCTTTTTGGGTTGACCAAGTACCTTGTAGAGACGGATCGGGCGCAACCCCTATTTATGAACTAACCAACAGAGGTTAGGGTCTACTTATTACACATGACTTAGTTGTCACCCATAGAGAATTTTTGGAGTCATAGAGGGTATACTACTGAAGTACCTACAGTGGTGACTAGTGGAGAGAGTCATGGTCTTTTTACTGTTTAGCTTGCGTGGCGTAGTGACAAGTAGTTTTACTGTTATAGCCTGAAAAAGCAAAGTAACAGATAGTTACTATTCCTAAGATAGGTAATTTTACTGTTCTAACCCGATGAGGGTTCATGAGCAGGTAGTTTACTACCCCAGCCTGGAAAGGACATAGTGGTAGGTAGTTTTATTGTTTTAACTCGATGAGGGTACATGAGTAGGAAGTTTACTATCCCAACCTGGAAAGGGCATAGTGACAAGTAGTTTACTAATCTTAGGAACAGGTAGATGTTGCCCAGTGTCACAATCGCACTCTTGCGGTAGAGGGGCAACAATTGTGCAGCACTTGTTCTAACCCAGCAAACAAGTTAGCCGTGAGAAATTCAAATTTCGCAGACAACGTGGCGTATGCTCAAACCTCGGGTCACGTTTGAAAGAAATGTTTTAGAAAATGTGAGCGAGTAAATACGTTGAAAACAATTTGAAAGAAAGCAATGTTATATGCTAAAAGCGATTAGGCAACAACGACTTTGATAGCATATTACCCGATTGGGAATAAGTGACAACTAATCATATCCCCCTATAGTACATTTTGGAGCATTTTAGCTCTGGAGTTAAAATAAAAGCATGTAAAAGGGGTTTAAAACGGGCATGCAGCCATGGACAACACGTCCTGGACAAGCATGATCGGGACATCTGACATGCGACCATAGACAACACGCCTTAAACAAGCATGACTGTGAGACCCGACACCACTAGGGAGAATCTGCTGATTAGAGCTCAGTAGGTAGATATGTATGGAGTACGGTAATTATTTGGAGCAAAAAGGGCTCCTCCAGGCTTATGAGTATTACCCTAGGGTCCTTCCATAGGTCACTTCAACTCGAGGCGCACTTTGCACAAGAATGACAAAGGACCTAGACATACGTGAAACCTAAAACCAAAAGAAAATAGAAAACATCTAGGTTGTGAACTTGAGAGGGATTGAATACCCCTAAGGGATGTTGAGGCAAGTTGTACAGTGTCCTACCAAGTTTGGTATAGTTGTTTAGCCATAGTTTGGGTGATCACTAAAAACAACTATGAGCACATAGCTTAAGTTTCCGTATATAGGATTAAGTCTGAAATAGCTTAAGTTTCCGTGTATAGGATTAAGTCCGACAAGAGTCTACAAGTAGGTTGCTTACTGAGTATTTTTATACTCATTCCATGTTATTCTATTTTTGTTTTCCCGATGGAGTGTAGACCACTGTTAATGGCGGGAGCGTGCAGAGCCATGTAGTTGTAGGGGGCGCCCTTTAGATCGAGTCATCTTCCTTCTTGTCATTTATTATTATTTTAAATGTTATTGCTCGAAACTTAGGTACTTTTTGTAGACCATTTTGATTTGACTCCGCGGATATTACCTTTAGAATACTTTTATGTCGGATTTGAATGTATTTAAATTTTAAATTCTTTGTCTCCTGTTTTGCAAAAGAAGATTTTACCGCCTTTTTTACCTTGCGTGCATGGCAACCGGTGATGTGATATCGAAAATCAGGTCATTACAACATTAACTATCAGTATTGCCCATAATCCTATCCAGCATGATAGGACAAAATATATTGAACTTGATTGACATTTTATCAAGAATAAATGAGAGGAGATAGTATGCATTAATTTTATGTTATCACAACTTCAACTAGTAGATATACTATCATCTATCAAAAAGACTCACCGTTCAATGTTTCGTGAGTTAGTATCCAAGTTGGAAATGAGTGATATCTATTCCTCATATTCCTCATCTTGAAGGAGATTGTTAAAAGAATGACTTTAATTTAAGGAATATTTACTCCCATCAAAGAAGTTGTGTAATCCCATTAAAGAAGGGAAGTAGTTGACCTCCTAATTTAGATTGATTGTTCTTCAGTATCTAAGAATTTGTTTTTTAAGTTTAAAATGAATAGAAAGTAAGATAATTTACACTTGCAACACACCTACTTTATGTCAAGTGAGCTATGTATTGCCACTTGGCAGCTTAGCTTGGGGACAATAAATTCCCTTATTGATAGGAATTAACAAGGTATATAGTGGTCAGTTTAAAGAGTGCTAAACTGGGAATGTTCTATTTCTTCCATTAGCCAACAGCAACCGTCTTATAATAAAGCTTGGTGTAAATACTTGATTTTGCCAAATCTCGCAGTAGCCTAGAGAATTGGAATAAATGGTTGATTGCATCAAAGAGAAACCAAATGAACAAACTGACCTGCAGTTTAATTGTGATGCCTCTTTCTCTCTCCAAATCCATGTTATCAAGAAACTGATCCTTCATTTCTCGCGTCTGAACGGTACCGGTCATCTGAAGCAATTTATCCGCCAAAGTTGATTTACCATGATCAATGTGCGCAATAATGCAGAAGTTTCTGATGTGCGATATAGGAACCTGCATTTCAGACCTCAGAAAGCCATACCAAATTCGGTTCCCACAAATATGATTCAATTAAAACAAATGGAAACTGAGGAATTACTCGAGCACATTTAACAGGAGATAGACACAGGCTATTTGACGAGACAGTTGCAGAGGTTTAAAATGAGCATCCAAGAAGCAAATATATTCCGGCAAACAGGAGAGAAAACTAAAGACGGATAAAATTGTTAACATTGTGATAGAGAAAGAACCTTCAACAATCGATCCTGGCCGGCTTCAGCAGCGCATTTAGCATCGAAGAGATGTGTTCCAGCAGTCTGACAAAGGACCTTGCCTCTCGATGTTGCAGTTGAAGAAGAGGAAGAGGAGGAAGTGGAGAGGGAGGGAGAAAGTGGGAGTGGAAGTGTTGGGCAATGGAAGAGGGTGCTTCTCCTTGACTGGAGAAGACGACGATGTTGAGTGCATGTGGATAAGAGAGGCGCGAAGGAAAGCTCAGCCGCCATTGTGGTTCTTAGTTGTTTCGGAGGCTTCGCCGTGGGCTTAG

mRNA sequence

ATGCAACAAGCACAAGTCAAGATAAAGGGCTCTGGTCTTGGAAGAGATGCAGTGTTAAGAGCTATTCATAGAAGCGATATACTCTTAAGTTTCATACGGGATCAGTCTGACAAAGGACCTTGCCTCTCGATGTTGCAGTTGAAGAAGAGGAAGAGGAGGAAGTGGAGAGGGAGGGAGAAAGTGGGAGTGGAAGTGTTGGGCAATGGAAGAGGGTGCTTCTCCTTGACTGGAGAAGACGACGATGTTGAGTGCATGTGGATAAGAGAGGCGCGAAGGAAAGCTCAGCCGCCATTGTGGTTCTTAGTTGTTTCGGAGGCTTCGCCGTGGGCTTAG

Coding sequence (CDS)

ATGCAACAAGCACAAGTCAAGATAAAGGGCTCTGGTCTTGGAAGAGATGCAGTGTTAAGAGCTATTCATAGAAGCGATATACTCTTAAGTTTCATACGGGATCAGTCTGACAAAGGACCTTGCCTCTCGATGTTGCAGTTGAAGAAGAGGAAGAGGAGGAAGTGGAGAGGGAGGGAGAAAGTGGGAGTGGAAGTGTTGGGCAATGGAAGAGGGTGCTTCTCCTTGACTGGAGAAGACGACGATGTTGAGTGCATGTGGATAAGAGAGGCGCGAAGGAAAGCTCAGCCGCCATTGTGGTTCTTAGTTGTTTCGGAGGCTTCGCCGTGGGCTTAG

Protein sequence

MQQAQVKIKGSGLGRDAVLRAIHRSDILLSFIRDQSDKGPCLSMLQLKKRKRRKWRGREKVGVEVLGNGRGCFSLTGEDDDVECMWIREARRKAQPPLWFLVVSEASPWA

Homology

[Close]

BLAST of CmoCh07G014240 vs. ExPASy Swiss-Prot
Match: A4QK51 (30S ribosomal protein S11, chloroplastic OS=Arabis hirsuta OX=78191 GN=rps11 PE=3 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 1.0e-06
Identity = 26/34 (76.47%), Postives = 30/34 (88.24%), Query Frame = 0


Query: 1   MQQAQVKIKGSGLGRDAVLRAIHRSDILLSFIRD 35
           MQ+A+V+IKG GLGRDA LRAI RS ILLSF+RD
Sbjct: 88  MQRAEVRIKGPGLGRDAALRAIRRSGILLSFVRD 121

[Close]

BLAST of CmoCh07G014240 vs. ExPASy Swiss-Prot
Match: P56802 (30S ribosomal protein S11, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=rps11 PE=3 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 1.0e-06
Identity = 26/34 (76.47%), Postives = 30/34 (88.24%), Query Frame = 0


Query: 1   MQQAQVKIKGSGLGRDAVLRAIHRSDILLSFIRD 35
           MQ+A+V+IKG GLGRDA LRAI RS ILLSF+RD
Sbjct: 88  MQRAEVRIKGPGLGRDAALRAIRRSGILLSFVRD 121

[Close]

BLAST of CmoCh07G014240 vs. ExPASy Swiss-Prot
Match: A4QKD8 (30S ribosomal protein S11, chloroplastic OS=Barbarea verna OX=50458 GN=rps11 PE=3 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 1.0e-06
Identity = 26/34 (76.47%), Postives = 30/34 (88.24%), Query Frame = 0


Query: 1   MQQAQVKIKGSGLGRDAVLRAIHRSDILLSFIRD 35
           MQ+A+V+IKG GLGRDA LRAI RS ILLSF+RD
Sbjct: 88  MQRAEVRIKGPGLGRDAALRAIRRSGILLSFVRD 121

[Close]

BLAST of CmoCh07G014240 vs. ExPASy Swiss-Prot
Match: A4QKM5 (30S ribosomal protein S11, chloroplastic OS=Capsella bursa-pastoris OX=3719 GN=rps11 PE=3 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 1.0e-06
Identity = 26/34 (76.47%), Postives = 30/34 (88.24%), Query Frame = 0


Query: 1   MQQAQVKIKGSGLGRDAVLRAIHRSDILLSFIRD 35
           MQ+A+V+IKG GLGRDA LRAI RS ILLSF+RD
Sbjct: 88  MQRAEVRIKGPGLGRDAALRAIRRSGILLSFVRD 121

[Close]

BLAST of CmoCh07G014240 vs. ExPASy Swiss-Prot
Match: A4QKW4 (30S ribosomal protein S11, chloroplastic OS=Crucihimalaya wallichii OX=78192 GN=rps11 PE=3 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 1.0e-06
Identity = 26/34 (76.47%), Postives = 30/34 (88.24%), Query Frame = 0


Query: 1   MQQAQVKIKGSGLGRDAVLRAIHRSDILLSFIRD 35
           MQ+A+V+IKG GLGRDA LRAI RS ILLSF+RD
Sbjct: 88  MQRAEVRIKGPGLGRDAALRAIRRSGILLSFVRD 121

[Close]

BLAST of CmoCh07G014240 vs. ExPASy TrEMBL
Match: A0A6H0E837 (Ribosomal protein S11 OS=Hedysarum semenovii OX=1641295 GN=rps11 PE=3 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 4.4e-05
Identity = 28/34 (82.35%), Postives = 30/34 (88.24%), Query Frame = 0


Query: 1   MQQAQVKIKGSGLGRDAVLRAIHRSDILLSFIRD 35
           MQ+A V IKG+GLGRDA LRAIHRSDILL FIRD
Sbjct: 96  MQRADVMIKGTGLGRDAALRAIHRSDILLRFIRD 129

[Close]

BLAST of CmoCh07G014240 vs. ExPASy TrEMBL
Match: A0A097ZRH1 (Ribosomal protein S11 OS=Orobanche latisquama OX=362387 GN=rps11 PE=3 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 9.8e-05
Identity = 27/34 (79.41%), Postives = 31/34 (91.18%), Query Frame = 0


Query: 1   MQQAQVKIKGSGLGRDAVLRAIHRSDILLSFIRD 35
           MQ+A+V IKG GLGRDAVLRAI RSDILL+F+RD
Sbjct: 88  MQRAEVMIKGPGLGRDAVLRAIRRSDILLTFVRD 121

[Close]

BLAST of CmoCh07G014240 vs. ExPASy TrEMBL
Match: A0A6J3XT75 (30S ribosomal protein S11, chloroplastic OS=Silene kiusiana OX=1170223 GN=rps11 PE=3 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 9.8e-05
Identity = 27/34 (79.41%), Postives = 30/34 (88.24%), Query Frame = 0


Query: 1   MQQAQVKIKGSGLGRDAVLRAIHRSDILLSFIRD 35
           MQ+A+V IKG GLGRDA LRAIHRS ILLSF+RD
Sbjct: 88  MQRAEVMIKGPGLGRDAALRAIHRSGILLSFVRD 121

[Close]

BLAST of CmoCh07G014240 vs. ExPASy TrEMBL
Match: A0A6M8YPM2 (30S ribosomal protein S11, chloroplastic OS=Chamira circaeoides OX=300841 GN=rps11 PE=3 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 1.7e-04
Identity = 27/34 (79.41%), Postives = 30/34 (88.24%), Query Frame = 0


Query: 1   MQQAQVKIKGSGLGRDAVLRAIHRSDILLSFIRD 35
           MQ+A+VKIKG GLGRDA LRAI RS ILLSF+RD
Sbjct: 88  MQRAEVKIKGPGLGRDAALRAIRRSGILLSFVRD 121

[Close]

BLAST of CmoCh07G014240 vs. ExPASy TrEMBL
Match: A0A1Z1CL84 (30S ribosomal protein S11, chloroplastic OS=Albizia odoratissima OX=1191454 GN=rps11 PE=3 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 1.7e-04
Identity = 27/34 (79.41%), Postives = 31/34 (91.18%), Query Frame = 0


Query: 1   MQQAQVKIKGSGLGRDAVLRAIHRSDILLSFIRD 35
           MQ+A+V+IKG+GLGRDA LRAI RS ILLSFIRD
Sbjct: 88  MQRAEVRIKGAGLGRDAALRAIRRSGILLSFIRD 121

[Close]

BLAST of CmoCh07G014240 vs. NCBI nr
Match: YP_009767454.1 (ribosomal protein S11 [Hedysarum semenovii] >QIS98072.1 ribosomal protein S11 [Hedysarum semenovii])

HSP 1 Score: 57.4 bits (137), Expect = 9.1e-05
Identity = 28/34 (82.35%), Postives = 30/34 (88.24%), Query Frame = 0


Query: 1   MQQAQVKIKGSGLGRDAVLRAIHRSDILLSFIRD 35
           MQ+A V IKG+GLGRDA LRAIHRSDILL FIRD
Sbjct: 96  MQRADVMIKGTGLGRDAALRAIHRSDILLRFIRD 129

[Close]

BLAST of CmoCh07G014240 vs. NCBI nr
Match: YP_009108226.1 (ribosomal protein S11 [Orobanche latisquama] >CDI06852.1 ribosomal protein S11 [Orobanche latisquama])

HSP 1 Score: 56.2 bits (134), Expect = 2.0e-04
Identity = 27/34 (79.41%), Postives = 31/34 (91.18%), Query Frame = 0


Query: 1   MQQAQVKIKGSGLGRDAVLRAIHRSDILLSFIRD 35
           MQ+A+V IKG GLGRDAVLRAI RSDILL+F+RD
Sbjct: 88  MQRAEVMIKGPGLGRDAVLRAIRRSDILLTFVRD 121

[Close]

BLAST of CmoCh07G014240 vs. NCBI nr
Match: YP_009859831.1 (ribosomal protein S11 [Silene kiusiana] >AWX05958.1 ribosomal protein S11 [Silene kiusiana])

HSP 1 Score: 56.2 bits (134), Expect = 2.0e-04
Identity = 27/34 (79.41%), Postives = 30/34 (88.24%), Query Frame = 0


Query: 1   MQQAQVKIKGSGLGRDAVLRAIHRSDILLSFIRD 35
           MQ+A+V IKG GLGRDA LRAIHRS ILLSF+RD
Sbjct: 88  MQRAEVMIKGPGLGRDAALRAIHRSGILLSFVRD 121

[Close]

BLAST of CmoCh07G014240 vs. NCBI nr
Match: YP_009382994.1 (ribosomal protein S11 [Albizia odoratissima] >APA32845.1 ribosomal protein S11 [Albizia odoratissima])

HSP 1 Score: 55.5 bits (132), Expect = 3.5e-04
Identity = 27/34 (79.41%), Postives = 31/34 (91.18%), Query Frame = 0


Query: 1   MQQAQVKIKGSGLGRDAVLRAIHRSDILLSFIRD 35
           MQ+A+V+IKG+GLGRDA LRAI RS ILLSFIRD
Sbjct: 88  MQRAEVRIKGAGLGRDAALRAIRRSGILLSFIRD 121

[Close]

BLAST of CmoCh07G014240 vs. NCBI nr
Match: YP_009890944.1 (ribosomal protein S11 [Aphragmus involucratus] >QKK37317.1 ribosomal protein S11 [Aphragmus involucratus])

HSP 1 Score: 55.5 bits (132), Expect = 3.5e-04
Identity = 27/34 (79.41%), Postives = 30/34 (88.24%), Query Frame = 0


Query: 1   MQQAQVKIKGSGLGRDAVLRAIHRSDILLSFIRD 35
           MQ+A+VKIKG GLGRDA LRAI RS ILLSF+RD
Sbjct: 88  MQRAEVKIKGPGLGRDAALRAIRRSGILLSFVRD 121

[Close]

BLAST of CmoCh07G014240 vs. TAIR 10
Match: ATCG00750.1 (ribosomal protein S11 )

HSP 1 Score: 54.3 bits (129), Expect = 7.2e-08
Identity = 26/34 (76.47%), Postives = 30/34 (88.24%), Query Frame = 0


Query: 1   MQQAQVKIKGSGLGRDAVLRAIHRSDILLSFIRD 35
           MQ+A+V+IKG GLGRDA LRAI RS ILLSF+RD
Sbjct: 88  MQRAEVRIKGPGLGRDAALRAIRRSGILLSFVRD 121

The following BLAST results are available for this feature:

BLAST of CmoCh07G014240 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A4QK51	1.0e-06	76.47	30S ribosomal protein S11, chloroplastic OS=Arabis hirsuta OX=78191 GN=rps11 PE=...	[more]
P56802	1.0e-06	76.47	30S ribosomal protein S11, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=rps1...	[more]
A4QKD8	1.0e-06	76.47	30S ribosomal protein S11, chloroplastic OS=Barbarea verna OX=50458 GN=rps11 PE=...	[more]
A4QKM5	1.0e-06	76.47	30S ribosomal protein S11, chloroplastic OS=Capsella bursa-pastoris OX=3719 GN=r...	[more]
A4QKW4	1.0e-06	76.47	30S ribosomal protein S11, chloroplastic OS=Crucihimalaya wallichii OX=78192 GN=...	[more]

BLAST of CmoCh07G014240 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6H0E837	4.4e-05	82.35	Ribosomal protein S11 OS=Hedysarum semenovii OX=1641295 GN=rps11 PE=3 SV=1	[more]
A0A097ZRH1	9.8e-05	79.41	Ribosomal protein S11 OS=Orobanche latisquama OX=362387 GN=rps11 PE=3 SV=1	[more]
A0A6J3XT75	9.8e-05	79.41	30S ribosomal protein S11, chloroplastic OS=Silene kiusiana OX=1170223 GN=rps11 ...	[more]
A0A6M8YPM2	1.7e-04	79.41	30S ribosomal protein S11, chloroplastic OS=Chamira circaeoides OX=300841 GN=rps...	[more]
A0A1Z1CL84	1.7e-04	79.41	30S ribosomal protein S11, chloroplastic OS=Albizia odoratissima OX=1191454 GN=r...	[more]

BLAST of CmoCh07G014240 vs. NCBI nr


Match Name	E-value	Identity	Description
YP_009767454.1	9.1e-05	82.35	ribosomal protein S11 [Hedysarum semenovii] >QIS98072.1 ribosomal protein S11 [H...	[more]
YP_009108226.1	2.0e-04	79.41	ribosomal protein S11 [Orobanche latisquama] >CDI06852.1 ribosomal protein S11 [...	[more]
YP_009859831.1	2.0e-04	79.41	ribosomal protein S11 [Silene kiusiana] >AWX05958.1 ribosomal protein S11 [Silen...	[more]
YP_009382994.1	3.5e-04	79.41	ribosomal protein S11 [Albizia odoratissima] >APA32845.1 ribosomal protein S11 [...	[more]
YP_009890944.1	3.5e-04	79.41	ribosomal protein S11 [Aphragmus involucratus] >QKK37317.1 ribosomal protein S11...	[more]

BLAST of CmoCh07G014240 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00750.1	7.2e-08	76.47	ribosomal protein S11	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001971	Ribosomal protein S11	PFAM	PF00411	Ribosomal_S11	coord: 1..35 e-value: 1.2E-5 score: 25.7

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh07G014240.1	CmoCh07G014240.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006351	transcription, DNA-templated
biological_process	GO:0006412	translation
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity
molecular_function	GO:0046983	protein dimerization activity
molecular_function	GO:0019843	rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome