CmoCh07G013660 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh07G013660
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	40S ribosomal protein S28
Location	Cmo_Chr07: 7744702 .. 7748207 (+)
RNA-Seq Expression	CmoCh07G013660
Synteny	CmoCh07G013660

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAATCCCAAATCAAACACGCTGTGGTGGTCAAAGTAATGGGTAGAACTGGATCAAGAGGGCAAGTGACGCAAGTGAGAGTTAAGTTTCTCGACGATCAGAATCGATACATCATGAGGAATGTCAAGGGACCTGTGAGGGAAGGTGACATTCTTACTCTACTAGAGTCTGAGAGAGAAGCCAGGAGGTTGCGTTGATGATGCCATGTTCCTGGTTCTCGTGTTACAGTTACCGATGATTTTCCTTCTCATCATAATACACTCTTTACGACTCGAATGATGTCTGCTATCAATTTTCGCATGTTTTCAGAAATCTGGTTTTTGGTTACTGGCATGTTGTGTCTCAAACCTTGGATTTGAAGGTAGAATGTTTGAAGTGGATGAGATAATTTATTTGAATAGTCAAATGATTTAATTATTCTATCTCTATTTTCTGCCAAAAGGGATTATTTTTTGTTTCGAGCGTGAAGAATTTTGGGGCGTACAATAAATTTGGTAATTTAAAATTCAATGACATAATTTTAAAAATTAAGAAAAATGTTACAAAATTTACAATGAATTATGTTAAGCTAAAAATAAAGTACGAATTAAAAATATTCAATTATATATTCAATTTTAAATTTAATTTAATTTAATTTATCAAAGTTTTTTTCTTATTTACTATCTTATTTTTGTAAGTTTTTTTTTCTTAAGAAAAACTCAGCCCACTTTGTAAAATAAAATAAAAACAATTTATAGATGTACAGACCGACCGGACCGGTTCGGTTCGGTTCGATTTAACCTAACCAATTCAGGAGTGGGTATCCCGAAGTCTCACACGCGTCTTTCTTAACACGCGAAGTTTCTCCCTGCTCTTCCAATTTGCCTCTTTCTCTCTCGTCTTCCTCACCGCCGCCCGCAGCCCTTCTCCCGTCGACGTCGGTCCCTTTTCTGGCGACATCAAATCAGGTACTCATGAAGAATAGTCCGGGAGGAATTTTCGGATCTGATTTTTCTTTTCGCAATCCCCCTCGCCTACCCTCTCTTTTCTCTTCCTTGTGTACTATATCTTCTAATTTTCTTTTTTGTGTTTGTTTTTTTATTTTCTTCGATCCATTTTTGTTCTGTTATGAGCTTTAGATTTTCTGTATGGCAAGGTGAAGAAAAGAGACCCCTTTTTGTGGATCTATTCATGTTTTCTTGTTCTATTTTCAAATTATTTGTATGATTTTTTTTTTTTTTAATACAAGTATCTGGATTTTTTTCACCTATCTTTGATGACGATTCTGAAACAACCGTCTTCAATTTCATTCGAAAGATAAATAGAAGTTACTAAGAGGTTCTTAGTAATCCCCAATCTCAGGCTATATGTATTTGATTCTTAGCTGTTGGGATTTATTCTAATTCAACTCAATCTTCCGGGTATTGTTTGCTACTTTTCTACATTGGCAAACTTATATTCAGATTATTTGTTCCTTCTTTCTTCCTGATTGTGATCTTTTGTGGATTTTCCCTTTTGATTATTAGGGAGGAGAGATATGAAGGTGAACCACAGATTTTTTAGTGCTTCTAAATTGAAAACAGATGGTTGAGACTGATATTAATCTTTCACAAAAGAGAGAAGATAAAGAGTATTGGTTGGGTATGTGTATCATGTCATTTGAATTAAGAAGGTAGTTGGGTTTGGAATGATGTCGTAGAATAAAAATCTTTTGAGTGGCTTTAGGGTTTTTATTGGGATTTGATAATTTTGGATGAGAAAGAAGAGAGTAGATGGAAGCAGACACTCAGAAGTCTCTGCAATTAGGGAGTTCATTTCCTTGCCATGTTTGTGTTGTGGGTTTCCTCTGTGGAGTTTGTATTGCTTCTCTATTTCTTGGTGCTTTTACTTTATTTGGTGTCCCTTTGGAATTTGGTTGGAGTTTTTTCTCACCCAATTCAATGTATGCTTCACTTTGGAACTCAACTTCTGAAAATATTAGTAAAAGTTGTCATCATCATAGGAATATTAAGCTTCAGTCATACTATTTTTCATCCAGTTATTGTTTATGTTTCTGTTTCTTTTTTTCTAAACATAATTAGTTATGGTCATGCTACGAAAAAACCTCATTATGACTTTCTTTTGAAATCTAAGAAAAGAAAGAAATCAAAGAGTATTGTCGGAGGTGTACAAAGCTTTTCAATGATGTTGTTTACCGCGCTATATCTTGGTGTAAATTGTCTAATACTTTTGTTTCCTGGAGTCACACCTCCCTCGTAGTAAATTGGGGAGGTTCTTTCTGTAATTATCATGGACAACACATGGCGTTCGTAAATGAAATTGAGAAACAGGAAATTAGAAACAAAAATGTTTGTAAATGAAATCGAGAAGCAGGAAATTAGAAACCAAAATGTTATCTATTGGGGCCTTTACTTAACTTAATAAAGTAGATAGATGTAGCTGGTGGAGTTTGGTGCAGTTTGATCTAATCCTGTGTATAATATGGTTCATTTGACTTGGGAACGTATCGATCCATTGCAGTTAGACGATGGCATCGAAGTACGTTGCAGCTTCTTTAGTCGGAACATTTGCAATTGCGTATATTGCTGATTACCTTGTTTCTGACAAGAAAATATTTGGAGGTAATGATAGTTTCTTTGGACTGCGGCCATTGCTTGGCTTTCAGTTTCTTTGATGTGCTACCATTGCTTTGTTGTGTTGATTTAATTTGTTTTCAGGAACAACCCCAAGTACTGTTTCGAACAGCGAGTGGTGGGAAGAAACTGACAAGAAATTCCAAGCATGGCCTCGTACTGCCGGTCCACCTGTGGTGATGAACCCGATCAGTCGCCAGAATTTCATCGTCAAAACCCGCCCTGAAGCTTAAATGTTACATTAGTTGTGAATCTATACACTTTTGATTGGATGGATCATTCTGGTTTGAAACTACTGCCTAGTCATTAAGCAGTTCTAATCTGCCTTGCCTTCATGTTTTGAGTTGGGAACTTGAAGCAATTCTTGTTGTTCTGATAGTCATTCTTATTTCCTCTTTAAAAGTTGCATCGTTAGTTTGTTATGATGATGATGATGTCATGATGTTGAATCTTAAATAATGCAGTGGAAAATTTCCCACCTCCTTCAGACAACGAGCAATCATCATCTTTCTTATTTACTTTGATTTATGAGATCCCCAAGTTCTTCATAGGTGTCTGGTTTGCTTGTTTATGATTTCTTTGCTTGATAGTCCAAACCCACTGTTAGTTGGTATTGTCGTCTTTGGGTTTTCCTCTAAGGTTTTTAATATTTCGGTTGACGGAGATTTCTTACACCCTTATAAAGAATGTGATTTGTTCTCTCCAATTGACGTGGGATCTCACAACCCACCTTGTCATGTGGGACCTCCCAATTCACCCACCTTTGGGGTTTGATGTCCTTGTTGGCACACCACCTTGTGCCCAGCCCTGTGTCCACCCCCTTTTGGGGCTGAAGGCTGGCACACCAACTTGTGTCCAGCCTCGAGTCCACTCCCTTTCAAGGTTGAGCCTCC

mRNA sequence

ATGGAATCCCAAATCAAACACGCTGTGGTGGTCAAAGTAATGGGTAGAACTGGATCAAGAGGGCAAGTGACGCAAGTGAGAGTTAAGTTTCTCGACGATCAGAATCGATACATCATGAGGAATGTCAAGGGACCTGTGAGGGAAGGTGACATTCTTACTCTACTAGAGTCTGAGAGAGAAGCCAGGAGAAATCTGGTTTTTGGTTACTGGCATGTTGTGTCTCAAACCTTGGATTTGAAGGTAGAATGTTTGAAGAGTGGGTATCCCGAAGTCTCACACGCGTCTTTCTTAACACGCGAAGTTTCTCCCTGCTCTTCCAATTTGCCTCTTTCTCTCTCGTCTTCCTCACCGCCGCCCGCAGCCCTTCTCCCGTCGACGTCGGTCCCTTTTCTGGCGACATCAAATCAGACGATGGCATCGAAGTACGTTGCAGCTTCTTTAGTCGGAACATTTGCAATTGCGTATATTGCTGATTACCTTGTTTCTGACAAGAAAATATTTGGAGGAACAACCCCAAGTACTGTTTCGAACAGCGAGTGGTGGGAAGAAACTGACAAGAAATTCCAAGCATGGCCTCGTACTGCCGGTCCACCTGTGGTGATGAACCCGATCAGTCGCCAGAATTTCATCGTCAAAACCCGCCCTGAAGCTTAAATGTTACATTAGTTGTGAATCTATACACTTTTGATTGGATGGATCATTCTGGTTTGAAACTACTGCCTAGTCATTAAGCAGTTCTAATCTGCCTTGCCTTCATGTTTTGAGTTGGGAACTTGAAGCAATTCTTGTTGTTCTGATAGTCATTCTTATTTCCTCTTTAAAAGTTGCATCGTTAGTTTGTTATGATGATGATGATGTCATGATGTTGAATCTTAAATAATGCAGTGGAAAATTTCCCACCTCCTTCAGACAACGAGCAATCATCATCTTTCTTATTTACTTTGATTTATGAGATCCCCAAGTTCTTCATAGGTGTCTGGTTTGCTTGTTTATGATTTCTTTGCTTGATAGTCCAAACCCACTGTTAGTTGGTATTGTCGTCTTTGGGTTTTCCTCTAAGGTTTTTAATATTTCGGTTGACGGAGATTTCTTACACCCTTATAAAGAATGTGATTTGTTCTCTCCAATTGACGTGGGATCTCACAACCCACCTTGTCATGTGGGACCTCCCAATTCACCCACCTTTGGGGTTTGATGTCCTTGTTGGCACACCACCTTGTGCCCAGCCCTGTGTCCACCCCCTTTTGGGGCTGAAGGCTGGCACACCAACTTGTGTCCAGCCTCGAGTCCACTCCCTTTCAAGGTTGAGCCTCC

Coding sequence (CDS)

ATGGAATCCCAAATCAAACACGCTGTGGTGGTCAAAGTAATGGGTAGAACTGGATCAAGAGGGCAAGTGACGCAAGTGAGAGTTAAGTTTCTCGACGATCAGAATCGATACATCATGAGGAATGTCAAGGGACCTGTGAGGGAAGGTGACATTCTTACTCTACTAGAGTCTGAGAGAGAAGCCAGGAGAAATCTGGTTTTTGGTTACTGGCATGTTGTGTCTCAAACCTTGGATTTGAAGGTAGAATGTTTGAAGAGTGGGTATCCCGAAGTCTCACACGCGTCTTTCTTAACACGCGAAGTTTCTCCCTGCTCTTCCAATTTGCCTCTTTCTCTCTCGTCTTCCTCACCGCCGCCCGCAGCCCTTCTCCCGTCGACGTCGGTCCCTTTTCTGGCGACATCAAATCAGACGATGGCATCGAAGTACGTTGCAGCTTCTTTAGTCGGAACATTTGCAATTGCGTATATTGCTGATTACCTTGTTTCTGACAAGAAAATATTTGGAGGAACAACCCCAAGTACTGTTTCGAACAGCGAGTGGTGGGAAGAAACTGACAAGAAATTCCAAGCATGGCCTCGTACTGCCGGTCCACCTGTGGTGATGAACCCGATCAGTCGCCAGAATTTCATCGTCAAAACCCGCCCTGAAGCTTAA

Protein sequence

MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRNLVFGYWHVVSQTLDLKVECLKSGYPEVSHASFLTREVSPCSSNLPLSLSSSSPPPAALLPSTSVPFLATSNQTMASKYVAASLVGTFAIAYIADYLVSDKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGPPVVMNPISRQNFIVKTRPEA

Homology

[Close]

BLAST of CmoCh07G013660 vs. ExPASy Swiss-Prot
Match: P46302 (40S ribosomal protein S28 OS=Zea mays OX=4577 GN=RPS28 PE=3 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 1.1e-23
Identity = 57/63 (90.48%), Postives = 60/63 (95.24%), Query Frame = 0


Query: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60
          M++Q+K AVVVKVMGRTGSRGQVTQVRVKFLDDQNR IMRNVKGPV EGDILTLLESERE
Sbjct: 1  MDTQVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVCEGDILTLLESERE 60

Query: 61 ARR 64
          ARR
Sbjct: 61 ARR 63

[Close]

BLAST of CmoCh07G013660 vs. ExPASy Swiss-Prot
Match: Q9SR73 (40S ribosomal protein S28-1 OS=Arabidopsis thaliana OX=3702 GN=RPS28A PE=3 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 1.8e-23
Identity = 58/63 (92.06%), Postives = 60/63 (95.24%), Query Frame = 0


Query: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60
          M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF  D +RYIMRNVKGPVREGDILTLLESERE
Sbjct: 1  MDSQIKHAVVVKVMGRTGSRGQVTQVRVKF-TDSDRYIMRNVKGPVREGDILTLLESERE 60

Query: 61 ARR 64
          ARR
Sbjct: 61 ARR 62

[Close]

BLAST of CmoCh07G013660 vs. ExPASy Swiss-Prot
Match: P34789 (40S ribosomal protein S28-2 OS=Arabidopsis thaliana OX=3702 GN=RPS28C PE=3 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 6.8e-23
Identity = 56/63 (88.89%), Postives = 60/63 (95.24%), Query Frame = 0


Query: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60
          M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF  D +R+IMRNVKGPVREGD+LTLLESERE
Sbjct: 1  MDSQIKHAVVVKVMGRTGSRGQVTQVRVKF-TDSDRFIMRNVKGPVREGDVLTLLESERE 60

Query: 61 ARR 64
          ARR
Sbjct: 61 ARR 62

[Close]

BLAST of CmoCh07G013660 vs. ExPASy Swiss-Prot
Match: Q6PBK3 (40S ribosomal protein S28 OS=Danio rerio OX=7955 GN=rps28 PE=3 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 1.3e-18
Identity = 47/59 (79.66%), Postives = 53/59 (89.83%), Query Frame = 0


Query: 5  IKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARR 64
          IK A V KV+GRTGS+GQ TQVRV+F+DD NR I+RNVKGPVREGD+LTLLESEREARR
Sbjct: 9  IKLARVTKVLGRTGSQGQCTQVRVEFMDDSNRSIIRNVKGPVREGDVLTLLESEREARR 67

[Close]

BLAST of CmoCh07G013660 vs. ExPASy Swiss-Prot
Match: Q90YP3 (40S ribosomal protein S28 OS=Ictalurus punctatus OX=7998 GN=rps28 PE=3 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 1.3e-18
Identity = 47/59 (79.66%), Postives = 53/59 (89.83%), Query Frame = 0


Query: 5  IKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARR 64
          IK A V KV+GRTGS+GQ TQVRV+F+DD NR I+RNVKGPVREGD+LTLLESEREARR
Sbjct: 9  IKLARVTKVLGRTGSQGQCTQVRVEFMDDSNRSIIRNVKGPVREGDVLTLLESEREARR 67

[Close]

BLAST of CmoCh07G013660 vs. ExPASy TrEMBL
Match: A0A6J1EBA8 (uncharacterized protein LOC111432556 OS=Cucurbita moschata OX=3662 GN=LOC111432556 PE=4 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 1.7e-37
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 0


Query: 138 MASKYVAASLVGTFAIAYIADYLVSDKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGP 197
           MASKYVAASLVGTFAIAYIADYLVSDKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGP
Sbjct: 1   MASKYVAASLVGTFAIAYIADYLVSDKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGP 60

Query: 198 PVVMNPISRQNFIVKTRPEA 218
           PVVMNPISRQNFIVKTRPEA
Sbjct: 61  PVVMNPISRQNFIVKTRPEA 80

[Close]

BLAST of CmoCh07G013660 vs. ExPASy TrEMBL
Match: A0A6J1HPI7 (uncharacterized protein LOC111466138 OS=Cucurbita maxima OX=3661 GN=LOC111466138 PE=4 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 3.3e-36
Identity = 78/80 (97.50%), Postives = 79/80 (98.75%), Query Frame = 0


Query: 138 MASKYVAASLVGTFAIAYIADYLVSDKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGP 197
           MA+KYVAASLVGTFAIAYIADYLVSDKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGP
Sbjct: 1   MAAKYVAASLVGTFAIAYIADYLVSDKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGP 60

Query: 198 PVVMNPISRQNFIVKTRPEA 218
           PVVMNPISRQNFIVKTR EA
Sbjct: 61  PVVMNPISRQNFIVKTRSEA 80

[Close]

BLAST of CmoCh07G013660 vs. ExPASy TrEMBL
Match: A0A5J4ZM71 (Uncharacterized protein OS=Nyssa sinensis OX=561372 GN=F0562_015655 PE=4 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 5.4e-31
Identity = 65/84 (77.38%), Postives = 75/84 (89.29%), Query Frame = 0


Query: 134 SNQTMASKYVAASLVGTFAIAYIADYLVSDKKIFGGTTPSTVSNSEWWEETDKKFQAWPR 193
           S   MA+KY+ +SLVG+FA+A+  DY+++DKKIFGGTTPSTVSN EWWEETDKKFQAWPR
Sbjct: 61  SRLNMATKYIISSLVGSFALAFACDYIIADKKIFGGTTPSTVSNKEWWEETDKKFQAWPR 120

Query: 194 TAGPPVVMNPISRQNFIVKTRPEA 218
           TAGPPVVMNPISRQNFIVK+  EA
Sbjct: 121 TAGPPVVMNPISRQNFIVKSHSEA 144

[Close]

BLAST of CmoCh07G013660 vs. ExPASy TrEMBL
Match: A0A6J1HS56 (uncharacterized protein LOC111467297 OS=Cucurbita maxima OX=3661 GN=LOC111467297 PE=4 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 9.2e-31
Identity = 66/80 (82.50%), Postives = 72/80 (90.00%), Query Frame = 0


Query: 138 MASKYVAASLVGTFAIAYIADYLVSDKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGP 197
           MA+KY+  S +G FA AY++D LV+DKKIFGGTTPSTV NSEWWEETDKKFQAWPRTAGP
Sbjct: 1   MAAKYIVVSTLGAFAFAYVSDILVADKKIFGGTTPSTVLNSEWWEETDKKFQAWPRTAGP 60

Query: 198 PVVMNPISRQNFIVKTRPEA 218
           PVVMNPISRQNFIVKTR EA
Sbjct: 61  PVVMNPISRQNFIVKTRSEA 80

[Close]

BLAST of CmoCh07G013660 vs. ExPASy TrEMBL
Match: A0A5A7UM13 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold784G00430 PE=4 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 1.2e-30
Identity = 65/77 (84.42%), Postives = 72/77 (93.51%), Query Frame = 0


Query: 138 MASKYVAASLVGTFAIAYIADYLVSDKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGP 197
           MA+KY+  SL+G  A+AYI D+L+SDKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGP
Sbjct: 1   MAAKYIVGSLLGATAVAYIGDHLISDKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGP 60

Query: 198 PVVMNPISRQNFIVKTR 215
           PVVMNPISRQNFIVK+R
Sbjct: 61  PVVMNPISRQNFIVKSR 77

[Close]

BLAST of CmoCh07G013660 vs. NCBI nr
Match: KAG6595666.1 (40S ribosomal protein S28, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 281.2 bits (718), Expect = 7.7e-72
Identity = 155/204 (75.98%), Postives = 158/204 (77.45%), Query Frame = 0


Query: 14  MGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRNLVFGYWHVV 73
           MGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARR          
Sbjct: 1   MGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARR---------- 60

Query: 74  SQTLDLKVECLKSGYPEVSHASFLTREVSPCSSNLPLSLSSSSPPPAALLPSTSVPFLAT 133
                       SGYPEVSHASFLTREVSPCSSNLPLSLSSSSPPPAALLPSTSVPFLAT
Sbjct: 61  ------------SGYPEVSHASFLTREVSPCSSNLPLSLSSSSPPPAALLPSTSVPFLAT 120

Query: 134 SNQTMASKYVAASLVGTFAIAYIADYLVSDKKIFGGTTPSTVSNSEWWEETDKKFQAWPR 193
           SNQ                   + D +   +KIFGGTTPSTVSNSEWWEETDKKFQAWPR
Sbjct: 121 SNQ-------------------LDDGI---EKIFGGTTPSTVSNSEWWEETDKKFQAWPR 160

Query: 194 TAGPPVVMNPISRQNFIVKTRPEA 218
           TAGPPVVMNPISRQNFIVKTRPEA
Sbjct: 181 TAGPPVVMNPISRQNFIVKTRPEA 160

[Close]

BLAST of CmoCh07G013660 vs. NCBI nr
Match: KAG6603220.1 (40S ribosomal protein S28, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 209.9 bits (533), Expect = 2.2e-50
Identity = 120/218 (55.05%), Postives = 138/218 (63.30%), Query Frame = 0


Query: 1   MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGD-ILTLLESER 60
           MESQIKHA+VVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGP++  D +LT  +S  
Sbjct: 1   MESQIKHALVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPLQSSDFLLTFSDSNF 60

Query: 61  EARRNLVFGYWHVVSQTLDLKVECLKSGYPEVSHASFLTREVSPCSSNLPLSLSSSSPPP 120
               +L+       +  L   V+            S    EV    + + L+        
Sbjct: 61  STHSHLLITSTARPAADLSFPVDL------RPISRSLCISEVHRLENRINLT-------- 120

Query: 121 AALLPSTSVPFLATSNQTMASKYVAASLVGTFAIAYIADYLVSDKKIFGGTTPSTVSNSE 180
                             MA+KY+  S +G FA AYI+  LV+DKKIFGGTTP+TV NSE
Sbjct: 121 -----------------KMAAKYIVVSTLGAFAFAYISHILVADKKIFGGTTPTTVLNSE 180

Query: 181 WWEETDKKFQAWPRTAGPPVVMNPISRQNFIVKTRPEA 218
           WWEETDKKFQAWPRTAGPPVVMNPISRQNFIVKTR EA
Sbjct: 181 WWEETDKKFQAWPRTAGPPVVMNPISRQNFIVKTRSEA 187

[Close]

BLAST of CmoCh07G013660 vs. NCBI nr
Match: XP_022925267.1 (uncharacterized protein LOC111432556 [Cucurbita moschata] >KAG7027625.1 hypothetical protein SDJN02_11640 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 166.0 bits (419), Expect = 3.6e-37
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 0


Query: 138 MASKYVAASLVGTFAIAYIADYLVSDKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGP 197
           MASKYVAASLVGTFAIAYIADYLVSDKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGP
Sbjct: 1   MASKYVAASLVGTFAIAYIADYLVSDKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGP 60

Query: 198 PVVMNPISRQNFIVKTRPEA 218
           PVVMNPISRQNFIVKTRPEA
Sbjct: 61  PVVMNPISRQNFIVKTRPEA 80

[Close]

BLAST of CmoCh07G013660 vs. NCBI nr
Match: XP_023517179.1 (uncharacterized protein LOC111781016 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 163.3 bits (412), Expect = 2.3e-36
Identity = 78/80 (97.50%), Postives = 79/80 (98.75%), Query Frame = 0


Query: 138 MASKYVAASLVGTFAIAYIADYLVSDKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGP 197
           MA+KYV ASLVGTFAIAYIADYLVSDKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGP
Sbjct: 1   MAAKYVTASLVGTFAIAYIADYLVSDKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGP 60

Query: 198 PVVMNPISRQNFIVKTRPEA 218
           PVVMNPISRQNFIVKTRPEA
Sbjct: 61  PVVMNPISRQNFIVKTRPEA 80

[Close]

BLAST of CmoCh07G013660 vs. NCBI nr
Match: XP_022966506.1 (uncharacterized protein LOC111466138 [Cucurbita maxima])

HSP 1 Score: 161.8 bits (408), Expect = 6.8e-36
Identity = 78/80 (97.50%), Postives = 79/80 (98.75%), Query Frame = 0


Query: 138 MASKYVAASLVGTFAIAYIADYLVSDKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGP 197
           MA+KYVAASLVGTFAIAYIADYLVSDKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGP
Sbjct: 1   MAAKYVAASLVGTFAIAYIADYLVSDKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGP 60

Query: 198 PVVMNPISRQNFIVKTRPEA 218
           PVVMNPISRQNFIVKTR EA
Sbjct: 61  PVVMNPISRQNFIVKTRSEA 80

[Close]

BLAST of CmoCh07G013660 vs. TAIR 10
Match: AT1G01170.1 (Protein of unknown function (DUF1138) )

HSP 1 Score: 131.7 bits (330), Expect = 7.0e-31
Identity = 58/77 (75.32%), Postives = 67/77 (87.01%), Query Frame = 0


Query: 140 SKYVAASLVGTFAIAYIADYLVSDKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGPPV 199
           +KY+  +L+G+F I+YI D ++SD KIFGGTTP TVSN EWW  TD+KFQAWPRTAGPPV
Sbjct: 7   AKYIIGALIGSFGISYIFDKVISDNKIFGGTTPGTVSNKEWWAATDEKFQAWPRTAGPPV 66

Query: 200 VMNPISRQNFIVKTRPE 217
           VMNPISRQNFIVKTRPE
Sbjct: 67  VMNPISRQNFIVKTRPE 83

[Close]

BLAST of CmoCh07G013660 vs. TAIR 10
Match: AT1G01170.2 (Protein of unknown function (DUF1138) )

HSP 1 Score: 131.7 bits (330), Expect = 7.0e-31
Identity = 58/77 (75.32%), Postives = 67/77 (87.01%), Query Frame = 0


Query: 140 SKYVAASLVGTFAIAYIADYLVSDKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGPPV 199
           +KY+  +L+G+F I+YI D ++SD KIFGGTTP TVSN EWW  TD+KFQAWPRTAGPPV
Sbjct: 7   AKYIIGALIGSFGISYIFDKVISDNKIFGGTTPGTVSNKEWWAATDEKFQAWPRTAGPPV 66

Query: 200 VMNPISRQNFIVKTRPE 217
           VMNPISRQNFIVKTRPE
Sbjct: 67  VMNPISRQNFIVKTRPE 83

[Close]

BLAST of CmoCh07G013660 vs. TAIR 10
Match: AT3G10090.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 110.9 bits (276), Expect = 1.3e-24
Identity = 58/63 (92.06%), Postives = 60/63 (95.24%), Query Frame = 0


Query: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60
          M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF  D +RYIMRNVKGPVREGDILTLLESERE
Sbjct: 1  MDSQIKHAVVVKVMGRTGSRGQVTQVRVKF-TDSDRYIMRNVKGPVREGDILTLLESERE 60

Query: 61 ARR 64
          ARR
Sbjct: 61 ARR 62

[Close]

BLAST of CmoCh07G013660 vs. TAIR 10
Match: AT5G03850.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 110.9 bits (276), Expect = 1.3e-24
Identity = 58/63 (92.06%), Postives = 60/63 (95.24%), Query Frame = 0


Query: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60
          M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF  D +RYIMRNVKGPVREGDILTLLESERE
Sbjct: 1  MDSQIKHAVVVKVMGRTGSRGQVTQVRVKF-TDSDRYIMRNVKGPVREGDILTLLESERE 60

Query: 61 ARR 64
          ARR
Sbjct: 61 ARR 62

[Close]

BLAST of CmoCh07G013660 vs. TAIR 10
Match: AT4G00860.1 (Protein of unknown function (DUF1138) )

HSP 1 Score: 110.2 bits (274), Expect = 2.2e-24
Identity = 46/75 (61.33%), Postives = 60/75 (80.00%), Query Frame = 0


Query: 142 YVAASLVGTFAIAYIADYLVSDKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGPPVVM 201
           Y+  +L G+  +AY+ D ++SD K+FGGTTP T++N EW   T+++ QAWPR AGPPVVM
Sbjct: 6   YIIGALAGSAVVAYVCDKVISDDKLFGGTTPGTITNKEWGAATEERLQAWPRVAGPPVVM 65

Query: 202 NPISRQNFIVKTRPE 217
           NPISRQNFIVK+RPE
Sbjct: 66  NPISRQNFIVKSRPE 80

The following BLAST results are available for this feature:

BLAST of CmoCh07G013660 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P46302	1.1e-23	90.48	40S ribosomal protein S28 OS=Zea mays OX=4577 GN=RPS28 PE=3 SV=1	[more]
Q9SR73	1.8e-23	92.06	40S ribosomal protein S28-1 OS=Arabidopsis thaliana OX=3702 GN=RPS28A PE=3 SV=1	[more]
P34789	6.8e-23	88.89	40S ribosomal protein S28-2 OS=Arabidopsis thaliana OX=3702 GN=RPS28C PE=3 SV=1	[more]
Q6PBK3	1.3e-18	79.66	40S ribosomal protein S28 OS=Danio rerio OX=7955 GN=rps28 PE=3 SV=1	[more]
Q90YP3	1.3e-18	79.66	40S ribosomal protein S28 OS=Ictalurus punctatus OX=7998 GN=rps28 PE=3 SV=1	[more]

BLAST of CmoCh07G013660 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EBA8	1.7e-37	100.00	uncharacterized protein LOC111432556 OS=Cucurbita moschata OX=3662 GN=LOC1114325...	[more]
A0A6J1HPI7	3.3e-36	97.50	uncharacterized protein LOC111466138 OS=Cucurbita maxima OX=3661 GN=LOC111466138...	[more]
A0A5J4ZM71	5.4e-31	77.38	Uncharacterized protein OS=Nyssa sinensis OX=561372 GN=F0562_015655 PE=4 SV=1	[more]
A0A6J1HS56	9.2e-31	82.50	uncharacterized protein LOC111467297 OS=Cucurbita maxima OX=3661 GN=LOC111467297...	[more]
A0A5A7UM13	1.2e-30	84.42	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of CmoCh07G013660 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6595666.1	7.7e-72	75.98	40S ribosomal protein S28, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAG6603220.1	2.2e-50	55.05	40S ribosomal protein S28, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022925267.1	3.6e-37	100.00	uncharacterized protein LOC111432556 [Cucurbita moschata] >KAG7027625.1 hypothet...	[more]
XP_023517179.1	2.3e-36	97.50	uncharacterized protein LOC111781016 [Cucurbita pepo subsp. pepo]	[more]
XP_022966506.1	6.8e-36	97.50	uncharacterized protein LOC111466138 [Cucurbita maxima]	[more]

BLAST of CmoCh07G013660 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G01170.1	7.0e-31	75.32	Protein of unknown function (DUF1138)	[more]
AT1G01170.2	7.0e-31	75.32	Protein of unknown function (DUF1138)	[more]
AT3G10090.1	1.3e-24	92.06	Nucleic acid-binding, OB-fold-like protein	[more]
AT5G03850.1	1.3e-24	92.06	Nucleic acid-binding, OB-fold-like protein	[more]
AT4G00860.1	2.2e-24	61.33	Protein of unknown function (DUF1138)	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	2.40.50.140		coord: 1..64 e-value: 6.1E-34 score: 117.7
None	No IPR available	PANTHER	PTHR34267:SF1	OS11G0161033 PROTEIN	coord: 138..215
IPR000289	Ribosomal protein S28e	PFAM	PF01200	Ribosomal_S28e	coord: 4..63 e-value: 1.9E-30 score: 104.6
IPR000289	Ribosomal protein S28e	HAMAP	MF_00292	Ribosomal_S28e	coord: 1..65 score: 20.442806
IPR000289	Ribosomal protein S28e	CDD	cd04457	S1_S28E	coord: 6..64 e-value: 1.31776E-35 score: 118.121
IPR009515	Protein of unknown function DUF1138	PFAM	PF06592	DUF1138	coord: 140..212 e-value: 1.1E-41 score: 140.7
IPR009515	Protein of unknown function DUF1138	PANTHER	PTHR34267	OS11G0161033 PROTEIN	coord: 138..215
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 2..63

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh07G013660.1	CmoCh07G013660.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome