CmoCh07G012340 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh07G012340
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionProline-rich receptor-like protein kinase PERK2
LocationCmo_Chr07: 6744224 .. 6744592 (+)
RNA-Seq ExpressionCmoCh07G012340
SyntenyCmoCh07G012340
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCTCTTCCAACTACTTCATCATACCTTTCATGGCTACTTTAGTGTTTTCGGCCATCGACACTGGCCGAGCAGCTCGTCATCTCCTGCAAATCGCTTCACCGAGCGTGCCAGGGTTGCCCTCATTGCCTCCTCTCCCGTCGTTGCCAAACCCGACAACAGGGTCAGGAATCCCTTCTATCCCAAGCCTCCCACAACCAACGTTGCCAACTACTCAACCATCCCTCCCTAAGTTACCACCATTTCCAACCTTCCCTAGCAACATCCCGACTGGAATGGCGCTGCCTCCGCTCCCGACAACTTTGCTTCCAAACCTACCCTCGATCCCTTCCCTCACTCCACCGCCGACCACCACCTCTTCACCTTGA

mRNA sequence

ATGGCCTCTTCCAACTACTTCATCATACCTTTCATGGCTACTTTAGTGTTTTCGGCCATCGACACTGGCCGAGCAGCTCGTCATCTCCTGCAAATCGCTTCACCGAGCGTGCCAGGGTTGCCCTCATTGCCTCCTCTCCCGTCGTTGCCAAACCCGACAACAGGGTCAGGAATCCCTTCTATCCCAAGCCTCCCACAACCAACGTTGCCAACTACTCAACCATCCCTCCCTAAGTTACCACCATTTCCAACCTTCCCTAGCAACATCCCGACTGGAATGGCGCTGCCTCCGCTCCCGACAACTTTGCTTCCAAACCTACCCTCGATCCCTTCCCTCACTCCACCGCCGACCACCACCTCTTCACCTTGA

Coding sequence (CDS)

ATGGCCTCTTCCAACTACTTCATCATACCTTTCATGGCTACTTTAGTGTTTTCGGCCATCGACACTGGCCGAGCAGCTCGTCATCTCCTGCAAATCGCTTCACCGAGCGTGCCAGGGTTGCCCTCATTGCCTCCTCTCCCGTCGTTGCCAAACCCGACAACAGGGTCAGGAATCCCTTCTATCCCAAGCCTCCCACAACCAACGTTGCCAACTACTCAACCATCCCTCCCTAAGTTACCACCATTTCCAACCTTCCCTAGCAACATCCCGACTGGAATGGCGCTGCCTCCGCTCCCGACAACTTTGCTTCCAAACCTACCCTCGATCCCTTCCCTCACTCCACCGCCGACCACCACCTCTTCACCTTGA

Protein sequence

MASSNYFIIPFMATLVFSAIDTGRAARHLLQIASPSVPGLPSLPPLPSLPNPTTGSGIPSIPSLPQPTLPTTQPSLPKLPPFPTFPSNIPTGMALPPLPTTLLPNLPSIPSLTPPPTTTSSP
Homology
BLAST of CmoCh07G012340 vs. ExPASy TrEMBL
Match: A0A6J1J782 (uncharacterized protein LOC111483197 OS=Cucurbita maxima OX=3661 GN=LOC111483197 PE=4 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 7.7e-35
Identity = 92/124 (74.19%), Postives = 99/124 (79.84%), Query Frame = 0

Query: 1   MASSNYFIIPFMATLVFSAIDTGRAARHLLQIASPSVPGLPSLPPLPSLPNPTTGSGIPS 60
           MASSNYFI+ FMATLVFSAIDTGRAAR LLQ A PSVPGLPSLPPLP  P   T  G+PS
Sbjct: 1   MASSNYFIMAFMATLVFSAIDTGRAARRLLQTAQPSVPGLPSLPPLPPFP---TVPGMPS 60

Query: 61  IPSLPQPTLPTTQPSLPKLPPFPTFPSNIPTGMALPPLPT--TLLPNLPSIPSLTPPPTT 120
           IP+LPQPTLPTTQPSLPK+PP P+FP  IPTG+ LPPLPT  +     PSIP LTPPP  
Sbjct: 61  IPNLPQPTLPTTQPSLPKMPPLPSFPGGIPTGVTLPPLPTLPSFPTTFPSIPFLTPPPAA 120

Query: 121 TSSP 123
           TSSP
Sbjct: 121 TSSP 121

BLAST of CmoCh07G012340 vs. ExPASy TrEMBL
Match: A0A6J1E948 (uncharacterized protein LOC111430528 OS=Cucurbita moschata OX=3662 GN=LOC111430528 PE=4 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 2.0e-30
Identity = 86/116 (74.14%), Postives = 93/116 (80.17%), Query Frame = 0

Query: 11  FMATLVFSAIDTGRAARHLLQIASPSVPGLPSLPPLPSLPNPTTGSGIPSIPSLPQPTLP 70
           FMATLVFSAIDTGRAAR LLQ A PSVPGLPSLPPLP  P   T  G+PSIP+LPQPTLP
Sbjct: 3   FMATLVFSAIDTGRAARRLLQTAQPSVPGLPSLPPLPPFP---TVPGMPSIPNLPQPTLP 62

Query: 71  TTQPSLPKLPPFPTFPSNIPTGMALPPLPTTLLPN----LPSIPSLTPPPTTTSSP 123
           TTQPSLPK+PP P+FP +IPTG+ LPPLPT  LP+     PSIP LTPPP  TSSP
Sbjct: 63  TTQPSLPKMPPLPSFPGSIPTGVTLPPLPT--LPSFPMTFPSIPFLTPPPAATSSP 113

BLAST of CmoCh07G012340 vs. ExPASy TrEMBL
Match: A0A0A0KWI7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G182290 PE=4 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 2.9e-26
Identity = 83/129 (64.34%), Postives = 94/129 (72.87%), Query Frame = 0

Query: 1   MASSNYFI-IPFMATLVFSAIDTGRAARHLLQIASPSVPGLPSLPPL---PSLPNPTTGS 60
           M S  YF+ + FMATLVFSAID+ RAAR LLQ A P++PGLPSLP L   P LP    G 
Sbjct: 1   MVSPKYFMTLTFMATLVFSAIDSSRAARRLLQTAPPNMPGLPSLPKLMGMPPLPPLPMGP 60

Query: 61  GIPSIPSLPQPTLPTTQPSLPKLPPFPTFPSNIP-TGMALPPLPT--TLLPNLPSIPSLT 120
           G+PSIP+LPQPT PT QPSLPKLPP P+ P NIP TG+  PPLPT  ++    PSIP LT
Sbjct: 61  GMPSIPNLPQPTFPTIQPSLPKLPPLPSLPVNIPATGVVFPPLPTLPSIPTTFPSIPFLT 120

Query: 121 PPPTTTSSP 123
           PPP TTSSP
Sbjct: 121 PPPATTSSP 129

BLAST of CmoCh07G012340 vs. ExPASy TrEMBL
Match: A0A5A7TLS8 (Proline-rich receptor-like protein kinase PERK2 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G00030 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 5.0e-26
Identity = 88/133 (66.17%), Postives = 96/133 (72.18%), Query Frame = 0

Query: 1   MASSNYFII-PFMATLVFSAIDTGRAARHLLQIASPSVPGLPSLPP---LPSLPNPTTGS 60
           MAS  YFII  FMATLVFSAIDT RAAR LLQ A P++PGLPSLP    LP LP    G 
Sbjct: 1   MASPKYFIILTFMATLVFSAIDTSRAARCLLQTAPPNMPGLPSLPKPIGLPPLPPLPMGP 60

Query: 61  GIPSIPSLPQPTLPTTQPSLPKLPPFPTFPSNIP-TGMALPPLPTTL--LPNL----PSI 120
           G+ SIP+ PQPT PT QPSLPKLPP P+ P NIP TG  LPPLPT+L  LP++    PSI
Sbjct: 61  GMSSIPNFPQPTFPTIQPSLPKLPPLPSLPLNIPTTGAVLPPLPTSLPTLPSIPTTFPSI 120

Query: 121 PSLTPPPTTTSSP 123
           P LTPPP T SSP
Sbjct: 121 PFLTPPPATHSSP 133

BLAST of CmoCh07G012340 vs. ExPASy TrEMBL
Match: A0A5D3E045 (Proline-rich receptor-like protein kinase PERK2 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G00030 PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 2.1e-24
Identity = 86/134 (64.18%), Postives = 92/134 (68.66%), Query Frame = 0

Query: 1   MASSNYF-IIPFMATLVFSAIDTGRAARHLLQIASPSVPGLPSLPP---LPSLPNPTTGS 60
           MAS  YF I+ FMATLVFSAIDT RAAR LLQ A P++PGLPSLP    LP LP    G 
Sbjct: 1   MASPKYFMILTFMATLVFSAIDTSRAARCLLQTAPPNMPGLPSLPKPIGLPPLPPLPMGP 60

Query: 61  GIPSIPSLPQPTLPTTQPSLPKLPPFPTFPSNIP-TGMALPPLPTTLLPNLPSIPS---- 120
           G  SIP+ PQPT PT QPSLPKLPP P+ P NIP TG  LPPL T  LP LPSIP+    
Sbjct: 61  GTSSIPNFPQPTFPTIQPSLPKLPPLPSLPLNIPTTGAVLPPL-TNSLPTLPSIPTTFPS 120

Query: 121 ---LTPPPTTTSSP 123
              LTPPP T SSP
Sbjct: 121 IPFLTPPPATHSSP 133

BLAST of CmoCh07G012340 vs. NCBI nr
Match: KAG7027509.1 (hypothetical protein SDJN02_11523, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 216.5 bits (550), Expect = 1.3e-52
Identity = 118/122 (96.72%), Postives = 119/122 (97.54%), Query Frame = 0

Query: 1   MASSNYFIIPFMATLVFSAIDTGRAARHLLQIASPSVPGLPSLPPLPSLPNPTTGSGIPS 60
           MASSNY II FMATLVFSAIDTGRAARHLLQIASPSVPGLPSLPPLP LPNPTTGSGIPS
Sbjct: 1   MASSNYLIIAFMATLVFSAIDTGRAARHLLQIASPSVPGLPSLPPLPPLPNPTTGSGIPS 60

Query: 61  IPSLPQPTLPTTQPSLPKLPPFPTFPSNIPTGMALPPLPTTLLPNLPSIPSLTPPPTTTS 120
           IPSLPQPTLPTTQPSLPKLPPFPTFPSNIPTGMALPPLPTTLLPNLPSIPSLTPPPTT+S
Sbjct: 61  IPSLPQPTLPTTQPSLPKLPPFPTFPSNIPTGMALPPLPTTLLPNLPSIPSLTPPPTTSS 120

Query: 121 SP 123
           SP
Sbjct: 121 SP 122

BLAST of CmoCh07G012340 vs. NCBI nr
Match: KAG6595525.1 (hypothetical protein SDJN03_12078, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 216.1 bits (549), Expect = 1.7e-52
Identity = 118/122 (96.72%), Postives = 119/122 (97.54%), Query Frame = 0

Query: 1   MASSNYFIIPFMATLVFSAIDTGRAARHLLQIASPSVPGLPSLPPLPSLPNPTTGSGIPS 60
           MASSNY II FMATLVFSAIDTGRAARHLLQIASPSVPGLPSLPPLPSLPNPT GSGIPS
Sbjct: 1   MASSNYLIIAFMATLVFSAIDTGRAARHLLQIASPSVPGLPSLPPLPSLPNPTIGSGIPS 60

Query: 61  IPSLPQPTLPTTQPSLPKLPPFPTFPSNIPTGMALPPLPTTLLPNLPSIPSLTPPPTTTS 120
           IPSLPQPTLPTTQPSLPKLPPFPTFPSNIPTGMALPPLPTTLLPNLPSIPSLTPPPTT+S
Sbjct: 61  IPSLPQPTLPTTQPSLPKLPPFPTFPSNIPTGMALPPLPTTLLPNLPSIPSLTPPPTTSS 120

Query: 121 SP 123
           SP
Sbjct: 121 SP 122

BLAST of CmoCh07G012340 vs. NCBI nr
Match: XP_023518060.1 (proline-rich receptor-like protein kinase PERK2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 199.9 bits (507), Expect = 1.3e-47
Identity = 111/125 (88.80%), Postives = 116/125 (92.80%), Query Frame = 0

Query: 1   MASSNYFIIPFMATLVFSAIDTGRAARHLLQIASPSVPGLPS---LPPLPSLPNPTTGSG 60
           MAS  Y II F+ATLVFSAIDTGRAARHLLQ A P+VPGLPS   LPPLP++PNPTTGSG
Sbjct: 1   MASFKYLIIAFVATLVFSAIDTGRAARHLLQTAPPNVPGLPSLPPLPPLPTMPNPTTGSG 60

Query: 61  IPSIPSLPQPTLPTTQPSLPKLPPFPTFPSNIPTGMALPPLPTTLLPNLPSIPSLTPPPT 120
           IPSIPSLPQPTLPTTQPSLPKLPPFPTFPSNIPTGMALPPLPTTLLPNLPSIPSLTPPPT
Sbjct: 61  IPSIPSLPQPTLPTTQPSLPKLPPFPTFPSNIPTGMALPPLPTTLLPNLPSIPSLTPPPT 120

Query: 121 TTSSP 123
           T+SSP
Sbjct: 121 TSSSP 125

BLAST of CmoCh07G012340 vs. NCBI nr
Match: XP_023518061.1 (protein PELPK1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 186.4 bits (472), Expect = 1.4e-43
Identity = 107/128 (83.59%), Postives = 112/128 (87.50%), Query Frame = 0

Query: 1   MASSNYFIIPFMATLVFSAIDTGRAARHLLQIASPSVPGLPS---LPPLPSLPNPTTGSG 60
           MASS Y II FM TL+FSAIDTGRAARHLLQ A P+VP LPS   LPPLP++PNPTTG G
Sbjct: 1   MASSKYLIIAFMVTLMFSAIDTGRAARHLLQTAPPNVPRLPSLPPLPPLPTMPNPTTGPG 60

Query: 61  IPSIPSLPQ---PTLPTTQPSLPKLPPFPTFPSNIPTGMALPPLPTTLLPNLPSIPSLTP 120
           IPSIPSLPQ   PTLPTTQPSLPKLPP P+FP NIPTGMALPPLPTTLLPNLPSIPSLTP
Sbjct: 61  IPSIPSLPQPTLPTLPTTQPSLPKLPPLPSFPRNIPTGMALPPLPTTLLPNLPSIPSLTP 120

Query: 121 PPTTTSSP 123
           PPTTTSSP
Sbjct: 121 PPTTTSSP 128

BLAST of CmoCh07G012340 vs. NCBI nr
Match: KAG6595524.1 (hypothetical protein SDJN03_12077, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 172.9 bits (437), Expect = 1.7e-39
Identity = 101/125 (80.80%), Postives = 108/125 (86.40%), Query Frame = 0

Query: 1   MASSNYFIIPFMATLVFSAIDTGRAARHLLQIASPSVPGLPS---LPPLPSLPNPTTGSG 60
           MASS Y II FMATL+FSAI+TGRAARHLLQ A P+VPGLPS   LPPLP++PNPTTG G
Sbjct: 1   MASSKYLIIAFMATLMFSAINTGRAARHLLQTAPPNVPGLPSLPPLPPLPTMPNPTTGPG 60

Query: 61  IPSIPSLPQPTLPTTQPSLPKLPPFPTFPSNIPTGMALPPLPTTLLPNLPSIPSLTPPPT 120
           IPSIPSLPQPTLPTTQPSLPKL P       +PTGMALPPLPTTLLPNLPSIPSLTPPP+
Sbjct: 61  IPSIPSLPQPTLPTTQPSLPKLSP-------LPTGMALPPLPTTLLPNLPSIPSLTPPPS 118

Query: 121 TTSSP 123
           TTSSP
Sbjct: 121 TTSSP 118

BLAST of CmoCh07G012340 vs. TAIR 10
Match: AT5G15780.1 (Pollen Ole e 1 allergen and extensin family protein )

HSP 1 Score: 45.4 bits (106), Expect = 3.7e-05
Identity = 38/93 (40.86%), Postives = 51/93 (54.84%), Query Frame = 0

Query: 34  SPSVPGLPSLPPLPSLPNPTTGSGIPSIPSLPQPTLPTTQPSLPKLPPFPTFPS-NIPTG 93
           +P +P  PSLPP+P +P P T   IP +P+ P PTLP   P++P LPP P  P   I   
Sbjct: 289 NPLIPSPPSLPPIPLIPTPPTLPTIPLLPTPPTPTLPPI-PTIPTLPPLPVLPPVPIVNP 348

Query: 94  MALPPLPTTL---LPNLPSIPSLTPPPTTTSSP 123
            +LPP P +    LP +P +P + P P     P
Sbjct: 349 PSLPPPPPSFPVPLPPVPGLPGIPPVPLIPGIP 380

BLAST of CmoCh07G012340 vs. TAIR 10
Match: AT4G38080.1 (hydroxyproline-rich glycoprotein family protein )

HSP 1 Score: 44.7 bits (104), Expect = 6.3e-05
Identity = 40/112 (35.71%), Postives = 57/112 (50.89%), Query Frame = 0

Query: 5   NYFIIPFMATLVFSAIDTGRAA-RHLLQIASPSVPGLPSLPPLPSLPNPTTGSGIPSIPS 64
           N F+   +  L F++  T  +A RHLLQ    + P   + PPLP     TT   +PS+P+
Sbjct: 6   NSFVTSLVIALTFTSFFTSLSAHRHLLQSTPVTQPPALTFPPLPK----TTMPPVPSLPT 65

Query: 65  LPQPTLPTTQPSLPKLPPFPTFPSNIPTGMALPPLPTTLLPNLPSIPSLTPP 116
             Q TLP  QP+LP+    P  PS       +P LP  + P +P+IP +  P
Sbjct: 66  PGQQTLPQPQPTLPQPTGLPPMPST-----QIPSLPNQVQPTIPNIPQINFP 108

BLAST of CmoCh07G012340 vs. TAIR 10
Match: AT2G22510.1 (hydroxyproline-rich glycoprotein family protein )

HSP 1 Score: 44.3 bits (103), Expect = 8.3e-05
Identity = 44/127 (34.65%), Postives = 61/127 (48.03%), Query Frame = 0

Query: 6   YFIIPFMATLVFSAIDTG-RAARHLLQIASPSVP------------GLPSLPPLPSLPNP 65
           +++   +  L F++  TG  A+RHLLQ      P             +P  PP  SLP P
Sbjct: 3   HWLSSLVIALTFTSFFTGLSASRHLLQSTPAITPPVTTTFPPLPTTTMPPFPPSTSLPQP 62

Query: 66  TTGSGIPS--IPSLPQPTLPTTQPSLPKLPPFPTFPSNIPTGMALPPLPTTLLPNLPSIP 118
           T    +PS  IPSLP P  P   P+ P++   P FP +IP        P  L  ++P+IP
Sbjct: 63  TAFPPLPSSQIPSLPNPAQPINIPNFPQI-NIPNFPISIPNN-----FPFNLPTSIPTIP 122

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1J7827.7e-3574.19uncharacterized protein LOC111483197 OS=Cucurbita maxima OX=3661 GN=LOC111483197... [more]
A0A6J1E9482.0e-3074.14uncharacterized protein LOC111430528 OS=Cucurbita moschata OX=3662 GN=LOC1114305... [more]
A0A0A0KWI72.9e-2664.34Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G182290 PE=4 SV=1[more]
A0A5A7TLS85.0e-2666.17Proline-rich receptor-like protein kinase PERK2 isoform X2 OS=Cucumis melo var. ... [more]
A0A5D3E0452.1e-2464.18Proline-rich receptor-like protein kinase PERK2 isoform X2 OS=Cucumis melo var. ... [more]
Match NameE-valueIdentityDescription
KAG7027509.11.3e-5296.72hypothetical protein SDJN02_11523, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6595525.11.7e-5296.72hypothetical protein SDJN03_12078, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_023518060.11.3e-4788.80proline-rich receptor-like protein kinase PERK2 [Cucurbita pepo subsp. pepo][more]
XP_023518061.11.4e-4383.59protein PELPK1-like [Cucurbita pepo subsp. pepo][more]
KAG6595524.11.7e-3980.80hypothetical protein SDJN03_12077, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
AT5G15780.13.7e-0540.86Pollen Ole e 1 allergen and extensin family protein [more]
AT4G38080.16.3e-0535.71hydroxyproline-rich glycoprotein family protein [more]
AT2G22510.18.3e-0534.65hydroxyproline-rich glycoprotein family protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 37..122
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 38..52
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 63..93
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 100..122
NoneNo IPR availablePANTHERPTHR33088:SF30LEGUMINOSIN GROUP485 SECRETED PEPTIDEcoord: 1..122
IPR044659Protein PELPK-likePANTHERPTHR33088MUCIN-2coord: 1..122

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh07G012340.1CmoCh07G012340.1mRNA