CmoCh07G011520 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh07G011520
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Unknown protein
Location	Cmo_Chr07: 6191935 .. 6192477 (+)
RNA-Seq Expression	CmoCh07G011520
Synteny	CmoCh07G011520

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGAGCCCCAAACTCGAGAAACTTTCGCCCAAAATCCATCACTCTCAATTCTCTCCCGCTCCTCTTTCGTTGCCGCCGATTCAGATCCCGCCGATCATCCTCTAGCACCACCTGCCGTAGCCGTTACCGTCACAGCCGCCTCCGATTCCAGTGATGTTGCTATCGAGGATCCCGATTTGCTTCGAGAACCTAAACGCCGAAAGCACTGTCCGACGGCGCTCGAGAATCTGGACGAATTGACGTCAGCGTCGAACTCCAGCTTCGCCTTCACTTTCGACACCAAATTCTGCGGGTTCTCCGCGGAGATCACTCCGAAATTCGGATCGTTCAACTCGATCGCACACGAAACCGAGACGAAGAAGAAGAAGAAAGAACAGAGATCGGTTCTCGATTTGGCGAGCGGAGTAAGAGGAGACGAAGAAGAGGAGAAATTAGATTCCGTACAGCGCGAACAAGATGAACAAGAAATCAAAGTCACCGATGCGTTGCTAGAAGCAATTGGAGAAGGAAGAGAAGGTCTGGAATCTGTGGCGGATTGA

mRNA sequence

ATGGCAGAGCCCCAAACTCGAGAAACTTTCGCCCAAAATCCATCACTCTCAATTCTCTCCCGCTCCTCTTTCGTTGCCGCCGATTCAGATCCCGCCGATCATCCTCTAGCACCACCTGCCGTAGCCGTTACCGTCACAGCCGCCTCCGATTCCAGTGATGTTGCTATCGAGGATCCCGATTTGCTTCGAGAACCTAAACGCCGAAAGCACTGTCCGACGGCGCTCGAGAATCTGGACGAATTGACGTCAGCGTCGAACTCCAGCTTCGCCTTCACTTTCGACACCAAATTCTGCGGGTTCTCCGCGGAGATCACTCCGAAATTCGGATCGTTCAACTCGATCGCACACGAAACCGAGACGAAGAAGAAGAAGAAAGAACAGAGATCGGTTCTCGATTTGGCGAGCGGAGTAAGAGGAGACGAAGAAGAGGAGAAATTAGATTCCGTACAGCGCGAACAAGATGAACAAGAAATCAAAGTCACCGATGCGTTGCTAGAAGCAATTGGAGAAGGAAGAGAAGGTCTGGAATCTGTGGCGGATTGA

Coding sequence (CDS)

ATGGCAGAGCCCCAAACTCGAGAAACTTTCGCCCAAAATCCATCACTCTCAATTCTCTCCCGCTCCTCTTTCGTTGCCGCCGATTCAGATCCCGCCGATCATCCTCTAGCACCACCTGCCGTAGCCGTTACCGTCACAGCCGCCTCCGATTCCAGTGATGTTGCTATCGAGGATCCCGATTTGCTTCGAGAACCTAAACGCCGAAAGCACTGTCCGACGGCGCTCGAGAATCTGGACGAATTGACGTCAGCGTCGAACTCCAGCTTCGCCTTCACTTTCGACACCAAATTCTGCGGGTTCTCCGCGGAGATCACTCCGAAATTCGGATCGTTCAACTCGATCGCACACGAAACCGAGACGAAGAAGAAGAAGAAAGAACAGAGATCGGTTCTCGATTTGGCGAGCGGAGTAAGAGGAGACGAAGAAGAGGAGAAATTAGATTCCGTACAGCGCGAACAAGATGAACAAGAAATCAAAGTCACCGATGCGTTGCTAGAAGCAATTGGAGAAGGAAGAGAAGGTCTGGAATCTGTGGCGGATTGA

Protein sequence

MAEPQTRETFAQNPSLSILSRSSFVAADSDPADHPLAPPAVAVTVTAASDSSDVAIEDPDLLREPKRRKHCPTALENLDELTSASNSSFAFTFDTKFCGFSAEITPKFGSFNSIAHETETKKKKKEQRSVLDLASGVRGDEEEEKLDSVQREQDEQEIKVTDALLEAIGEGREGLESVAD

Homology

[Close]

BLAST of CmoCh07G011520 vs. ExPASy TrEMBL
Match: A0A0A0L245 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G420180 PE=4 SV=1)

HSP 1 Score: 186.8 bits (473), Expect = 7.9e-44
Identity = 114/175 (65.14%), Postives = 126/175 (72.00%), Query Frame = 0


Query: 1   MAEPQTRETFAQNPSLSILSRSSF--VAADSDPADHPLAPPAVAVTVTAASDSSDVAIED 60
           MAEPQTRE  AQN SLS LSRSSF   A D DP D PL+PPAVAV            +ED
Sbjct: 1   MAEPQTRENLAQNLSLSPLSRSSFSPAAVDPDPVDPPLSPPAVAV------------LED 60

Query: 61  PDLLREPKRRKHCPTALENLDELTSASNSSFAFTFDTKFCGFSAEITPKFGSFNSIAHET 120
           PDL+REPKRRKHCPTALENLDELTSASNSSFAFTFDTKFCGFSAEITPKFGSFNSIA E 
Sbjct: 61  PDLIREPKRRKHCPTALENLDELTSASNSSFAFTFDTKFCGFSAEITPKFGSFNSIAPEM 120

Query: 121 ETKKKKKEQRSVLDLASGVRGDEEEEKLDSVQREQDEQEIKVTDALLEAIGEGRE 174
           E  +KK E+   +         EEEE +  V+ E++E+EI + DALLEAI E  E
Sbjct: 121 ERNQKKAEREVRV---------EEEESVHKVE-EEEEEEIGIADALLEAINEEEE 153

[Close]

BLAST of CmoCh07G011520 vs. ExPASy TrEMBL
Match: A0A5D3CCB2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold447G00340 PE=4 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 5.0e-38
Identity = 99/145 (68.28%), Postives = 107/145 (73.79%), Query Frame = 0


Query: 1   MAEPQTRETFAQNPSLSILSRSSF--VAADSDPADHPLAPPAVAVTVTAASDSSDVAIED 60
           MAEPQTRE  AQN SLS LSRSSF   A D DP D PL+PPAVA             ++D
Sbjct: 1   MAEPQTRENLAQNLSLSPLSRSSFSPPAVDPDPVDPPLSPPAVA------------PLQD 60

Query: 61  PDLLREPKRRKHCPTALENLDELTSASNSSFAFTFDTKFCGFSAEITPKFGSFNSIAHET 120
           PDL+REPKRRKHCPTALENLDELTSASNSSFAFTFDTKFCGFSAEITPKFGSFNSIA E 
Sbjct: 61  PDLIREPKRRKHCPTALENLDELTSASNSSFAFTFDTKFCGFSAEITPKFGSFNSIAPEM 120

Query: 121 ETKKKKKEQRSVLDLASGVRGDEEE 144
           E  +KK+E+         VR +EEE
Sbjct: 121 ERNQKKEERE--------VRVEEEE 125

[Close]

BLAST of CmoCh07G011520 vs. ExPASy TrEMBL
Match: M1CPV9 (Uncharacterized protein OS=Solanum tuberosum OX=4113 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 1.5e-13
Identity = 54/124 (43.55%), Postives = 77/124 (62.10%), Query Frame = 0


Query: 27  ADSDPADHPLAPPAVAVTVTAASDSSDVAIEDPDLLREPKRRKHCPTALENLDELTSASN 86
           ++S+ +D PL       + TA S      IEDPD+LR+PKRRK+CP+AL+  D + S SN
Sbjct: 20  SNSNSSDDPLP------STTAESWEEKPEIEDPDILRQPKRRKNCPSALDKFDSVNSGSN 79

Query: 87  SSFAFTFDTKFCGFSA-EITPKFGSFNSIAHETETKKKKKEQRSVLDLASGVRGDEEEEK 146
             F+F+FD+KF G S  E+TPKFGSFN +  +  + K  K + +VL+       D++EEK
Sbjct: 80  FGFSFSFDSKFSGCSTPEVTPKFGSFNRV--KPGSTKDPKSEETVLEEEDEDDDDDDEEK 135

Query: 147 LDSV 150
            D V
Sbjct: 140 PDVV 135

[Close]

BLAST of CmoCh07G011520 vs. ExPASy TrEMBL
Match: A0A0V0HAK9 (Putative ovule protein OS=Solanum chacoense OX=4108 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 3.2e-13
Identity = 55/124 (44.35%), Postives = 77/124 (62.10%), Query Frame = 0


Query: 27  ADSDPADHPLAPPAVAVTVTAASDSSDVAIEDPDLLREPKRRKHCPTALENLDELTSASN 86
           ++S+  D P +PP      TA S      IEDPD+LR+PKRRK+CP+AL+  D + S SN
Sbjct: 20  SNSNSGDDP-SPP-----TTAESWEEKPEIEDPDILRQPKRRKNCPSALDKFDSVNSGSN 79

Query: 87  SSFAFTFDTKFCGFSA-EITPKFGSFNSIAHETETKKKKKEQRSVLDLASGVRGDEEEEK 146
             F+F+FD+KF G S  E+TPKFGSFN +  +  + K  K + +VL+       D++EEK
Sbjct: 80  FGFSFSFDSKFSGCSTPEVTPKFGSFNRV--KPGSTKDPKSEETVLEEEDEDDDDDDEEK 135

Query: 147 LDSV 150
            D V
Sbjct: 140 PDVV 135

[Close]

BLAST of CmoCh07G011520 vs. ExPASy TrEMBL
Match: A0A3Q7JFM8 (Uncharacterized protein OS=Solanum lycopersicum OX=4081 GN=101250353 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 8.0e-12
Identity = 54/124 (43.55%), Postives = 77/124 (62.10%), Query Frame = 0


Query: 27  ADSDPADHPLAPPAVAVTVTAASDSSDVAIEDPDLLREPKRRKHCPTALENLDELTSASN 86
           ++S+  D P +PP      TA S      IEDPD++R+ KRRK+CP+AL+  D + S SN
Sbjct: 20  SNSNSGDDP-SPP-----TTAESWEEKPEIEDPDIIRQAKRRKNCPSALDKFDSVNSGSN 79

Query: 87  SSFAFTFDTKFCGFSA-EITPKFGSFNSIAHETETKKKKKEQRSVLDLASGVRGDEEEEK 146
             F+F+FD+KF G S  E+TPKFGSFN +  +  + K  K + +VL+    V  ++EEEK
Sbjct: 80  FGFSFSFDSKFSGCSTPEVTPKFGSFNRV--KPGSTKDPKSEETVLE----VEDEDEEEK 131

Query: 147 LDSV 150
            D V
Sbjct: 140 PDVV 131

[Close]

BLAST of CmoCh07G011520 vs. NCBI nr
Match: KAG6595438.1 (hypothetical protein SDJN03_11991, partial [Cucurbita argyrosperma subsp. sororia] >KAG7027436.1 hypothetical protein SDJN02_11449, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 332.4 bits (851), Expect = 2.4e-87
Identity = 180/181 (99.45%), Postives = 180/181 (99.45%), Query Frame = 0


Query: 1   MAEPQTRETFAQNPSLSILSRSSFVAADSDPADHPLAPPAVAVTVTAASDSSDVAIEDPD 60
           MAEPQTRETFAQNPSLSILSRSSFVAADSDPADHPLAPPAVAVTVTAASDSSDVAIEDPD
Sbjct: 1   MAEPQTRETFAQNPSLSILSRSSFVAADSDPADHPLAPPAVAVTVTAASDSSDVAIEDPD 60

Query: 61  LLREPKRRKHCPTALENLDELTSASNSSFAFTFDTKFCGFSAEITPKFGSFNSIAHETET 120
           LLREPKRRKHCPTALENLDELTSASNSSFAFTFDTKFCGFSAEITPKFGSFNSIAHETET
Sbjct: 61  LLREPKRRKHCPTALENLDELTSASNSSFAFTFDTKFCGFSAEITPKFGSFNSIAHETET 120

Query: 121 -KKKKKEQRSVLDLASGVRGDEEEEKLDSVQREQDEQEIKVTDALLEAIGEGREGLESVA 180
            KKKKKEQRSVLDLASGVRGDEEEEKLDSVQREQDEQEIKVTDALLEAIGEGREGLESVA
Sbjct: 121 KKKKKKEQRSVLDLASGVRGDEEEEKLDSVQREQDEQEIKVTDALLEAIGEGREGLESVA 180

[Close]

BLAST of CmoCh07G011520 vs. NCBI nr
Match: KAG6604296.1 (hypothetical protein SDJN03_04905, partial [Cucurbita argyrosperma subsp. sororia] >KAG7034454.1 hypothetical protein SDJN02_04183, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 222.2 bits (565), Expect = 3.5e-54
Identity = 132/187 (70.59%), Postives = 146/187 (78.07%), Query Frame = 0


Query: 1   MAEPQTRETFAQNPSLSILSRSSFVAADSDPADHPLAPPAVAVTVTAASDSSDVAIEDPD 60
           MAEPQTRE FAQNPSLS LSRSSF AAD DP +  L P  +A  V+AA+D SDV IEDPD
Sbjct: 1   MAEPQTRENFAQNPSLSPLSRSSFSAADPDPGERSLVPTTLA--VSAAADFSDVGIEDPD 60

Query: 61  LLREPKRRKHCPTALENLDELTSASNSSFAFTFDTKFCGFSAEITPKFGSFNSIAHETE- 120
           L+REPKRRKHCP+ALENLDELTSASNSSF FTFDTKFCG SAEITPKFGSFNSI  E E 
Sbjct: 61  LIREPKRRKHCPSALENLDELTSASNSSFGFTFDTKFCGVSAEITPKFGSFNSIVSEMES 120

Query: 121 TKKKKKEQRSVLDLASGVRGDEEEEKL------DSVQREQDEQEIKVTDALLEAIGEGRE 180
           TKK+KKEQR VLD AS  RGDEE E+       +  + E++E+E +V DALLEAI  G  
Sbjct: 121 TKKEKKEQRLVLDSASKTRGDEEREESVNRGTEEEEEEEEEEEEKEVADALLEAIEGG-- 180

[Close]

BLAST of CmoCh07G011520 vs. NCBI nr
Match: KGN54677.1 (hypothetical protein Csa_012626 [Cucumis sativus])

HSP 1 Score: 186.8 bits (473), Expect = 1.6e-43
Identity = 114/175 (65.14%), Postives = 126/175 (72.00%), Query Frame = 0


Query: 1   MAEPQTRETFAQNPSLSILSRSSF--VAADSDPADHPLAPPAVAVTVTAASDSSDVAIED 60
           MAEPQTRE  AQN SLS LSRSSF   A D DP D PL+PPAVAV            +ED
Sbjct: 1   MAEPQTRENLAQNLSLSPLSRSSFSPAAVDPDPVDPPLSPPAVAV------------LED 60

Query: 61  PDLLREPKRRKHCPTALENLDELTSASNSSFAFTFDTKFCGFSAEITPKFGSFNSIAHET 120
           PDL+REPKRRKHCPTALENLDELTSASNSSFAFTFDTKFCGFSAEITPKFGSFNSIA E 
Sbjct: 61  PDLIREPKRRKHCPTALENLDELTSASNSSFAFTFDTKFCGFSAEITPKFGSFNSIAPEM 120

Query: 121 ETKKKKKEQRSVLDLASGVRGDEEEEKLDSVQREQDEQEIKVTDALLEAIGEGRE 174
           E  +KK E+   +         EEEE +  V+ E++E+EI + DALLEAI E  E
Sbjct: 121 ERNQKKAEREVRV---------EEEESVHKVE-EEEEEEIGIADALLEAINEEEE 153

[Close]

BLAST of CmoCh07G011520 vs. NCBI nr
Match: KAA0025819.1 (uncharacterized protein E6C27_scaffold34G00730 [Cucumis melo var. makuwa] >TYK09637.1 uncharacterized protein E5676_scaffold447G00340 [Cucumis melo var. makuwa])

HSP 1 Score: 167.5 bits (423), Expect = 1.0e-37
Identity = 99/145 (68.28%), Postives = 107/145 (73.79%), Query Frame = 0


Query: 1   MAEPQTRETFAQNPSLSILSRSSF--VAADSDPADHPLAPPAVAVTVTAASDSSDVAIED 60
           MAEPQTRE  AQN SLS LSRSSF   A D DP D PL+PPAVA             ++D
Sbjct: 1   MAEPQTRENLAQNLSLSPLSRSSFSPPAVDPDPVDPPLSPPAVA------------PLQD 60

Query: 61  PDLLREPKRRKHCPTALENLDELTSASNSSFAFTFDTKFCGFSAEITPKFGSFNSIAHET 120
           PDL+REPKRRKHCPTALENLDELTSASNSSFAFTFDTKFCGFSAEITPKFGSFNSIA E 
Sbjct: 61  PDLIREPKRRKHCPTALENLDELTSASNSSFAFTFDTKFCGFSAEITPKFGSFNSIAPEM 120

Query: 121 ETKKKKKEQRSVLDLASGVRGDEEE 144
           E  +KK+E+         VR +EEE
Sbjct: 121 ERNQKKEERE--------VRVEEEE 125

[Close]

BLAST of CmoCh07G011520 vs. NCBI nr
Match: KAG5583307.1 (hypothetical protein H5410_053934 [Solanum commersonii])

HSP 1 Score: 85.1 bits (209), Expect = 6.7e-13
Identity = 56/126 (44.44%), Postives = 77/126 (61.11%), Query Frame = 0


Query: 25  VAADSDPADHPLAPPAVAVTVTAASDSSDVAIEDPDLLREPKRRKHCPTALENLDELTSA 84
           V ++S+  D P +PP      TA        IEDPD+LR+PKRRK+CP+AL+  D L S 
Sbjct: 18  VPSNSNSGDDP-SPP-----TTAEIWEEKPEIEDPDILRQPKRRKNCPSALDKFDSLNSG 77

Query: 85  SNSSFAFTFDTKFCGFSA-EITPKFGSFNSIAHETETKKKKKEQRSVLDLASGVRGDEEE 144
           SN  F+F+FD+KF G S  E+TPKFGSFN +  +  + K  K + +VL+       D++E
Sbjct: 78  SNFGFSFSFDSKFSGCSTPEVTPKFGSFNRV--KPGSTKDPKSEETVLEEEDEDDDDDDE 135

Query: 145 EKLDSV 150
           EK D V
Sbjct: 138 EKPDVV 135

The following BLAST results are available for this feature:

BLAST of CmoCh07G011520 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh07G011520 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L245	7.9e-44	65.14	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G420180 PE=4 SV=1	[more]
A0A5D3CCB2	5.0e-38	68.28	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
M1CPV9	1.5e-13	43.55	Uncharacterized protein OS=Solanum tuberosum OX=4113 PE=4 SV=1	[more]
A0A0V0HAK9	3.2e-13	44.35	Putative ovule protein OS=Solanum chacoense OX=4108 PE=4 SV=1	[more]
A0A3Q7JFM8	8.0e-12	43.55	Uncharacterized protein OS=Solanum lycopersicum OX=4081 GN=101250353 PE=4 SV=1	[more]

BLAST of CmoCh07G011520 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6595438.1	2.4e-87	99.45	hypothetical protein SDJN03_11991, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6604296.1	3.5e-54	70.59	hypothetical protein SDJN03_04905, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KGN54677.1	1.6e-43	65.14	hypothetical protein Csa_012626 [Cucumis sativus]	[more]
KAA0025819.1	1.0e-37	68.28	uncharacterized protein E6C27_scaffold34G00730 [Cucumis melo var. makuwa] >TYK09...	[more]
KAG5583307.1	6.7e-13	44.44	hypothetical protein H5410_053934 [Solanum commersonii]	[more]

BLAST of CmoCh07G011520 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 139..159
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 118..155

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh07G011520.1	CmoCh07G011520.1	mRNA