CmoCh07G010600 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh07G010600
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Retrotransposon protein, putative, Ty1-copia subclass
Location	Cmo_Chr07: 5389659 .. 5391240 (+)
RNA-Seq Expression	CmoCh07G010600
Synteny	CmoCh07G010600

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGATAACAACCTTTAGCACTTTATTCCTAAAGAAAGATCTCATATATGAAGAGGAACGTTCGAGATCTCACCTTGCGGATTTCTCTCGAATCTTGACAGAAGATGGAACTTCAAAAACACGAGTCCTCCTTTTCTTCAAGAAGAAGCTCCAACGTGTAAGTCTTGGTCGAGAGTGAACTTCGATGGTGGTTCTCCGACGAGAATGTTAGATAAAACCTGAGGTTTTCCTTATTTAGATTTACACGTTTTCATTAGTTGATTGAATACCTTCGTTTGACCATTTGACGAACACGTCTAATTACCAAACTTTTAGATGGCAATTTTGTAGGAAGTGGCCCAGATTTAGTTGGCCATTCTCCAGCCATTTTTAAGGATAACTTAGATATTTAAATAGGTAAATCTGTTTAGAAGATCTTATCACCTCATTTTAAGCAAAAGTCTTCAGCAATTCTCTATATGTTATTTTTCGCATTTTTATTTTCTTCCAACAACTTCCCGTCAAACGATTTCCTCTCACCGGATGTCACTTGCCGATTATCAAAAAACAACAAGTGGTATCAGAGCCCAGTTGAAGCCATCGGTGGTATATCATTGCGGAGGAGCCAACCTTATCAACAGTCAAGTTGAATAGCTCAAGTGGTTAGAGCGTCGACCTAACAACGCACAGATCTTAGGTTTGAGTAGAAGAAAATGCAAAGCACAAAAATACACATCGTGGGGTCCATCCCGAGCAGGCTCGCTCACTCCTCCACACCGCCACCAAGTGCCAGCATCTCCATCACCACCACGAAGAGGCCGACGCCGTGATGACGGGCGTCGAGTTGTCGTTGAGTGAGTGATCAGGGAGACAACGACCGCTATCGTTCAATATCCGATGTTGACAAGGTCCAACTACAACGAGTGGACCTTGTTGATGCGCATCAACCTACAGGCGCAAGGGTTATGGTACGCTGTCGAGCCAGAGGAAGAAGAAACGATTGAGTACCGGGAGGATCGGCTGGCGTTCGCCACCATATTTACGATCTGTGCCCCCAGACGTCTCTCTCCACCAAGCGCACCGCACAATCGGCCTACAAGGGAATCAAATACCATCGGGTCGGTGTACAACGAGTGCAGAAATCCAACATCGAGCAGCTGCAGCAGGAGCTCTCGGAGATCCGCTTTAAGGACGGCGAATCCGTCGATGATTTTTCAATGCGGATCACGGGGCTTGCCAACAGCATCACCACTTTCGGTGGCAGCATGAGCGAGACAGAAATCGTGAAGAAGATGCTGCAGGTCGTCCCCGATCACCTCGAGCAAGTCGCAATTTCAATTGAGACATTGCTTGACGTGAACGACCTAATGGTGGAAGAGGTGATCGGAAGACTGCGTAACGTCGAGCAGTGGAAGAAAAATACTATTTCAGCTCTCAACAAGGAGAGTTGTCTACTCCTCACGGAGGAGGAATGGCTTGCACGCCTAAAGCTCCGTGACGACATCGGCGAGAGCAATGGGCAATACTGTTTTAGCTCTCAACAAGGAGAGTTGTCTACTCCTCACGGAGGAGGAATGGCTTGCACGCCTAAAGCTCCATGA

mRNA sequence

ATGAAGATAACAACCTTTAGCACTTTATTCCTAAAGAAAGATCTCATATATGAAGAGGAACGTTCGAGATCTCACCTTGCGGATTTCTCTCGAATCTTGACAGAAGATGGAACTTCAAAAACACGAGTCCTCCTTTTCTTCAAGAAGAAGCTCCAACGTACGTCTCTCTCCACCAAGCGCACCGCACAATCGGCCTACAAGGGAATCAAATACCATCGGGTCGGTGTACAACGAGTGCAGAAATCCAACATCGAGCAGCTGCAGCAGGAGCTCTCGGAGATCCGCTTTAAGGACGGCGAATCCGTCGATGATTTTTCAATGCGGATCACGGGGCTTGCCAACAGCATCACCACTTTCGGTGGCAGCATGAGCGAGACAGAAATCGTGAAGAAGATGCTGCAGGTCGTCCCCGATCACCTCGAGCAAGTCGCAATTTCAATTGAGACATTGCTTGACGTGAACGACCTAATGGTGGAAGAGGTGATCGGAAGACTGCGTAACGTCGAGCAGTGGAAGAAAAATACTATTTCAGCTCTCAACAAGGAGAGTTGTCTACTCCTCACGGAGGAGGAATGGCTTGCACGCCTAAAGCTCCGTGACGACATCGGCGAGAGCAATGGGCAATACTGTTTTAGCTCTCAACAAGGAGAGTTGTCTACTCCTCACGGAGGAGGAATGGCTTGCACGCCTAAAGCTCCATGA

Coding sequence (CDS)

ATGAAGATAACAACCTTTAGCACTTTATTCCTAAAGAAAGATCTCATATATGAAGAGGAACGTTCGAGATCTCACCTTGCGGATTTCTCTCGAATCTTGACAGAAGATGGAACTTCAAAAACACGAGTCCTCCTTTTCTTCAAGAAGAAGCTCCAACGTACGTCTCTCTCCACCAAGCGCACCGCACAATCGGCCTACAAGGGAATCAAATACCATCGGGTCGGTGTACAACGAGTGCAGAAATCCAACATCGAGCAGCTGCAGCAGGAGCTCTCGGAGATCCGCTTTAAGGACGGCGAATCCGTCGATGATTTTTCAATGCGGATCACGGGGCTTGCCAACAGCATCACCACTTTCGGTGGCAGCATGAGCGAGACAGAAATCGTGAAGAAGATGCTGCAGGTCGTCCCCGATCACCTCGAGCAAGTCGCAATTTCAATTGAGACATTGCTTGACGTGAACGACCTAATGGTGGAAGAGGTGATCGGAAGACTGCGTAACGTCGAGCAGTGGAAGAAAAATACTATTTCAGCTCTCAACAAGGAGAGTTGTCTACTCCTCACGGAGGAGGAATGGCTTGCACGCCTAAAGCTCCGTGACGACATCGGCGAGAGCAATGGGCAATACTGTTTTAGCTCTCAACAAGGAGAGTTGTCTACTCCTCACGGAGGAGGAATGGCTTGCACGCCTAAAGCTCCATGA

Protein sequence

MKITTFSTLFLKKDLIYEEERSRSHLADFSRILTEDGTSKTRVLLFFKKKLQRTSLSTKRTAQSAYKGIKYHRVGVQRVQKSNIEQLQQELSEIRFKDGESVDDFSMRITGLANSITTFGGSMSETEIVKKMLQVVPDHLEQVAISIETLLDVNDLMVEEVIGRLRNVEQWKKNTISALNKESCLLLTEEEWLARLKLRDDIGESNGQYCFSSQQGELSTPHGGGMACTPKAP

Homology

[Close]

BLAST of CmoCh07G010600 vs. ExPASy TrEMBL
Match: Q01HC5 (H0807C06-H0308C08.8 protein OS=Oryza sativa OX=4530 GN=H0807C06-H0308C08.8 PE=4 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 6.0e-36
Identity = 90/185 (48.65%), Postives = 125/185 (67.57%), Query Frame = 0


Query: 55  SLSTKRTAQSAYKGIKYHRVGVQRVQKSNIEQLQQELSEIRFKDGESVDDFSMRITGLAN 114
           +L+ K T Q A++ IK  R+GVQ V+++N +QL++E  +I FKDGE+VDDFSMRI  LAN
Sbjct: 171 TLAVKETVQEAWEAIKTRRIGVQHVREANAQQLRREFGDILFKDGETVDDFSMRIGVLAN 230

Query: 115 SITTFGGSMSETEIVKKMLQVVPDHLEQVAISIETLLDVNDLMVEEVIGRLRNVEQWKKN 174
           ++ T G +++E E+V+K+LQVVP+HL+Q+AISIETLLDVN+L +EEV GRLR+VEQ K+ 
Sbjct: 231 NLRTLGDNITEAEVVQKLLQVVPEHLQQIAISIETLLDVNELSLEEVTGRLRSVEQSKQR 290

Query: 175 ----TISALNKESCLLLTEEEWLARLK----LRDDIGESNGQYCFSSQQGELSTPHGGGM 232
                 S ++   CLL TEEEWLA+ +    L+D    S+G       QG  +   G   
Sbjct: 291 KAVAASSRVDAYGCLLFTEEEWLAKFRKAASLQDAAHSSSGGNSDGQGQGHGNKDDGASK 350

[Close]

BLAST of CmoCh07G010600 vs. ExPASy TrEMBL
Match: A0A5S6RCQ1 (Putative pol polyprotein OS=Oryza sativa subsp. japonica OX=39947 GN=OSJNBb0042K08.6 PE=4 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 1.3e-35
Identity = 86/161 (53.42%), Postives = 120/161 (74.53%), Query Frame = 0


Query: 55  SLSTKRTAQSAYKGIKYHRVGVQRVQKSNIEQLQQELSEIRFKDGESVDDFSMRITGLAN 114
           +L+ K TAQ A++ IK  R+GVQRV++ N +QL++E  +I FKDGE+VDDFSMRI GLAN
Sbjct: 202 TLAVKETAQEAWEAIKTRRIGVQRVREVNAQQLRREFGDILFKDGETVDDFSMRIGGLAN 261

Query: 115 SITTFGGSMSETEIVKKMLQVVPDHLEQVAISIETLLDVNDLMVEEVIGRLRNVEQWKKN 174
           ++ T G +++E E+V+K+LQVVP+HL+Q+AISIETLLDVN++ +EEV GRLR+VEQ K+ 
Sbjct: 262 NLRTLGDNITEAEVVQKLLQVVPEHLQQIAISIETLLDVNEVSLEEVTGRLRSVEQRKQR 321

Query: 175 TISALNKE----SCLLLTEEEWLARLK----LRDDIGESNG 208
             +A + +      LL TEEEWLA+ +    L+D    S G
Sbjct: 322 KTAAASSQVDANGRLLFTEEEWLAKFRKAASLQDAAHSSGG 362

[Close]

BLAST of CmoCh07G010600 vs. ExPASy TrEMBL
Match: Q8SAW7 (Retrotransposon protein, putative, Ty1-copia subclass OS=Oryza sativa subsp. japonica OX=39947 GN=LOC_Os10g07460 PE=4 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 1.3e-35
Identity = 86/161 (53.42%), Postives = 120/161 (74.53%), Query Frame = 0


Query: 55  SLSTKRTAQSAYKGIKYHRVGVQRVQKSNIEQLQQELSEIRFKDGESVDDFSMRITGLAN 114
           +L+ K TAQ A++ IK  R+GVQRV++ N +QL++E  +I FKDGE+VDDFSMRI GLAN
Sbjct: 202 TLAVKETAQEAWEAIKTRRIGVQRVREVNAQQLRREFGDILFKDGETVDDFSMRIGGLAN 261

Query: 115 SITTFGGSMSETEIVKKMLQVVPDHLEQVAISIETLLDVNDLMVEEVIGRLRNVEQWKKN 174
           ++ T G +++E E+V+K+LQVVP+HL+Q+AISIETLLDVN++ +EEV GRLR+VEQ K+ 
Sbjct: 262 NLRTLGDNITEAEVVQKLLQVVPEHLQQIAISIETLLDVNEVSLEEVTGRLRSVEQRKQR 321

Query: 175 TISALNKE----SCLLLTEEEWLARLK----LRDDIGESNG 208
             +A + +      LL TEEEWLA+ +    L+D    S G
Sbjct: 322 KTAAASSQVDANGRLLFTEEEWLAKFRKAASLQDAAHSSGG 362

[Close]

BLAST of CmoCh07G010600 vs. ExPASy TrEMBL
Match: Q7XPB1 (OSJNBb0026E15.10 protein OS=Oryza sativa subsp. japonica OX=39947 GN=OSJNBb0026E15.10 PE=4 SV=2)

HSP 1 Score: 158.3 bits (399), Expect = 3.9e-35
Identity = 86/161 (53.42%), Postives = 121/161 (75.16%), Query Frame = 0


Query: 55  SLSTKRTAQSAYKGIKYHRVGVQRVQKSNIEQLQQELSEIRFKDGESVDDFSMRITGLAN 114
           +L+ K TAQ A++ IK  R+GVQRV+++N +QL++E  +I FKD E+VDDFSMRI GLAN
Sbjct: 108 TLAVKETAQEAWEAIKTRRIGVQRVREANAQQLRREFGDILFKDDETVDDFSMRIGGLAN 167

Query: 115 SITTFGGSMSETEIVKKMLQVVPDHLEQVAISIETLLDVNDLMVEEVIGRLRNVEQWKKN 174
           ++ T G +++E E+V+K+LQVVP+HL+Q+AISIETLLDVN+L +EEV GRLR+VEQ K+ 
Sbjct: 168 NLRTLGDNITEAEVVQKLLQVVPEHLQQIAISIETLLDVNELSLEEVTGRLRSVEQRKQC 227

Query: 175 TISA----LNKESCLLLTEEEWLARLK----LRDDIGESNG 208
             +A    ++    LL TEEEWLA+ +    L+D    S+G
Sbjct: 228 KTAAASSRVDANGRLLFTEEEWLAKFRKAASLQDAAHSSSG 268

[Close]

BLAST of CmoCh07G010600 vs. ExPASy TrEMBL
Match: Q7X7K3 (OSJNBb0046P18.1 protein OS=Oryza sativa subsp. japonica OX=39947 GN=OSJNBb0046P18.1 PE=4 SV=2)

HSP 1 Score: 156.8 bits (395), Expect = 1.1e-34
Identity = 88/185 (47.57%), Postives = 124/185 (67.03%), Query Frame = 0


Query: 55  SLSTKRTAQSAYKGIKYHRVGVQRVQKSNIEQLQQELSEIRFKDGESVDDFSMRITGLAN 114
           +L+ K T Q A++ IK  R+GVQ V+++N +QL++E  +I FKDGE+VDDFSMRI  LAN
Sbjct: 171 TLAVKETVQEAWEAIKTRRIGVQHVREANAQQLRREFGDIIFKDGETVDDFSMRIGVLAN 230

Query: 115 SITTFGGSMSETEIVKKMLQVVPDHLEQVAISIETLLDVNDLMVEEVIGRLRNVEQWKKN 174
           ++ T G ++++ E+V+K+LQVVP+HL+Q+AISIETLLDVN+L +EEV G LR+VEQ K+ 
Sbjct: 231 NLRTLGDNITDAEVVQKLLQVVPEHLQQIAISIETLLDVNELSLEEVTGSLRSVEQRKQR 290

Query: 175 ----TISALNKESCLLLTEEEWLARLK----LRDDIGESNGQYCFSSQQGELSTPHGGGM 232
                 S ++   CLL TEEEWLA+ +    L+D    S+G       QG  +   G   
Sbjct: 291 KAVAASSRVDAYGCLLFTEEEWLAKFRKAASLQDAAHSSSGGNSDRQGQGRGNKDDGASK 350

[Close]

BLAST of CmoCh07G010600 vs. NCBI nr
Match: CAH68021.1 (H0807C06-H0308C08.8 [Oryza sativa])

HSP 1 Score: 161.0 bits (406), Expect = 1.2e-35
Identity = 90/185 (48.65%), Postives = 125/185 (67.57%), Query Frame = 0


Query: 55  SLSTKRTAQSAYKGIKYHRVGVQRVQKSNIEQLQQELSEIRFKDGESVDDFSMRITGLAN 114
           +L+ K T Q A++ IK  R+GVQ V+++N +QL++E  +I FKDGE+VDDFSMRI  LAN
Sbjct: 171 TLAVKETVQEAWEAIKTRRIGVQHVREANAQQLRREFGDILFKDGETVDDFSMRIGVLAN 230

Query: 115 SITTFGGSMSETEIVKKMLQVVPDHLEQVAISIETLLDVNDLMVEEVIGRLRNVEQWKKN 174
           ++ T G +++E E+V+K+LQVVP+HL+Q+AISIETLLDVN+L +EEV GRLR+VEQ K+ 
Sbjct: 231 NLRTLGDNITEAEVVQKLLQVVPEHLQQIAISIETLLDVNELSLEEVTGRLRSVEQSKQR 290

Query: 175 ----TISALNKESCLLLTEEEWLARLK----LRDDIGESNGQYCFSSQQGELSTPHGGGM 232
                 S ++   CLL TEEEWLA+ +    L+D    S+G       QG  +   G   
Sbjct: 291 KAVAASSRVDAYGCLLFTEEEWLAKFRKAASLQDAAHSSSGGNSDGQGQGHGNKDDGASK 350

[Close]

BLAST of CmoCh07G010600 vs. NCBI nr
Match: AAL77140.1 (Putative pol polyprotein [Oryza sativa Japonica Group] >AAP52245.1 retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa Japonica Group])

HSP 1 Score: 159.8 bits (403), Expect = 2.8e-35
Identity = 86/161 (53.42%), Postives = 120/161 (74.53%), Query Frame = 0


Query: 55  SLSTKRTAQSAYKGIKYHRVGVQRVQKSNIEQLQQELSEIRFKDGESVDDFSMRITGLAN 114
           +L+ K TAQ A++ IK  R+GVQRV++ N +QL++E  +I FKDGE+VDDFSMRI GLAN
Sbjct: 202 TLAVKETAQEAWEAIKTRRIGVQRVREVNAQQLRREFGDILFKDGETVDDFSMRIGGLAN 261

Query: 115 SITTFGGSMSETEIVKKMLQVVPDHLEQVAISIETLLDVNDLMVEEVIGRLRNVEQWKKN 174
           ++ T G +++E E+V+K+LQVVP+HL+Q+AISIETLLDVN++ +EEV GRLR+VEQ K+ 
Sbjct: 262 NLRTLGDNITEAEVVQKLLQVVPEHLQQIAISIETLLDVNEVSLEEVTGRLRSVEQRKQR 321

Query: 175 TISALNKE----SCLLLTEEEWLARLK----LRDDIGESNG 208
             +A + +      LL TEEEWLA+ +    L+D    S G
Sbjct: 322 KTAAASSQVDANGRLLFTEEEWLAKFRKAASLQDAAHSSGG 362

[Close]

BLAST of CmoCh07G010600 vs. NCBI nr
Match: CAE03692.2 (OSJNBb0026E15.10 [Oryza sativa Japonica Group])

HSP 1 Score: 158.3 bits (399), Expect = 8.0e-35
Identity = 86/161 (53.42%), Postives = 121/161 (75.16%), Query Frame = 0


Query: 55  SLSTKRTAQSAYKGIKYHRVGVQRVQKSNIEQLQQELSEIRFKDGESVDDFSMRITGLAN 114
           +L+ K TAQ A++ IK  R+GVQRV+++N +QL++E  +I FKD E+VDDFSMRI GLAN
Sbjct: 108 TLAVKETAQEAWEAIKTRRIGVQRVREANAQQLRREFGDILFKDDETVDDFSMRIGGLAN 167

Query: 115 SITTFGGSMSETEIVKKMLQVVPDHLEQVAISIETLLDVNDLMVEEVIGRLRNVEQWKKN 174
           ++ T G +++E E+V+K+LQVVP+HL+Q+AISIETLLDVN+L +EEV GRLR+VEQ K+ 
Sbjct: 168 NLRTLGDNITEAEVVQKLLQVVPEHLQQIAISIETLLDVNELSLEEVTGRLRSVEQRKQC 227

Query: 175 TISA----LNKESCLLLTEEEWLARLK----LRDDIGESNG 208
             +A    ++    LL TEEEWLA+ +    L+D    S+G
Sbjct: 228 KTAAASSRVDANGRLLFTEEEWLAKFRKAASLQDAAHSSSG 268

[Close]

BLAST of CmoCh07G010600 vs. NCBI nr
Match: CAE03285.2 (OSJNBb0046P18.1 [Oryza sativa Japonica Group])

HSP 1 Score: 156.8 bits (395), Expect = 2.3e-34
Identity = 88/185 (47.57%), Postives = 124/185 (67.03%), Query Frame = 0


Query: 55  SLSTKRTAQSAYKGIKYHRVGVQRVQKSNIEQLQQELSEIRFKDGESVDDFSMRITGLAN 114
           +L+ K T Q A++ IK  R+GVQ V+++N +QL++E  +I FKDGE+VDDFSMRI  LAN
Sbjct: 171 TLAVKETVQEAWEAIKTRRIGVQHVREANAQQLRREFGDIIFKDGETVDDFSMRIGVLAN 230

Query: 115 SITTFGGSMSETEIVKKMLQVVPDHLEQVAISIETLLDVNDLMVEEVIGRLRNVEQWKKN 174
           ++ T G ++++ E+V+K+LQVVP+HL+Q+AISIETLLDVN+L +EEV G LR+VEQ K+ 
Sbjct: 231 NLRTLGDNITDAEVVQKLLQVVPEHLQQIAISIETLLDVNELSLEEVTGSLRSVEQRKQR 290

Query: 175 ----TISALNKESCLLLTEEEWLARLK----LRDDIGESNGQYCFSSQQGELSTPHGGGM 232
                 S ++   CLL TEEEWLA+ +    L+D    S+G       QG  +   G   
Sbjct: 291 KAVAASSRVDAYGCLLFTEEEWLAKFRKAASLQDAAHSSSGGNSDRQGQGRGNKDDGASK 350

[Close]

BLAST of CmoCh07G010600 vs. NCBI nr
Match: ABA94350.1 (retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa Japonica Group])

HSP 1 Score: 154.8 bits (390), Expect = 8.9e-34
Identity = 80/147 (54.42%), Postives = 115/147 (78.23%), Query Frame = 0


Query: 55  SLSTKRTAQSAYKGIKYHRVGVQRVQKSNIEQLQQELSEIRFKDGESVDDFSMRITGLAN 114
           +L+ K TAQ A++ IK  R+GVQ V+++N +QL++E  +I F+DGE+VD+FSMRI GLAN
Sbjct: 181 TLAVKETAQEAWEAIKTRRIGVQCVREANAQQLRREFGDILFEDGETVDNFSMRIGGLAN 240

Query: 115 SITTFGGSMSETEIVKKMLQVVPDHLEQVAISIETLLDVNDLMVEEVIGRLRNVEQWKKN 174
           ++ T G +++E E+V+K+LQVVP+HL+Q+AISIETLLDVN+L +EEV GRLR+VEQ K+ 
Sbjct: 241 NLRTLGDNITEAEVVQKLLQVVPEHLQQIAISIETLLDVNELSLEEVTGRLRSVEQRKQR 300

Query: 175 TISA----LNKESCLLLTEEEWLARLK 198
             +A    ++    LL TEEEWLA+ +
Sbjct: 301 KTAAASSRVDANGRLLFTEEEWLAKFR 327

The following BLAST results are available for this feature:

BLAST of CmoCh07G010600 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh07G010600 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
Q01HC5	6.0e-36	48.65	H0807C06-H0308C08.8 protein OS=Oryza sativa OX=4530 GN=H0807C06-H0308C08.8 PE=4 ...	[more]
A0A5S6RCQ1	1.3e-35	53.42	Putative pol polyprotein OS=Oryza sativa subsp. japonica OX=39947 GN=OSJNBb0042K...	[more]
Q8SAW7	1.3e-35	53.42	Retrotransposon protein, putative, Ty1-copia subclass OS=Oryza sativa subsp. jap...	[more]
Q7XPB1	3.9e-35	53.42	OSJNBb0026E15.10 protein OS=Oryza sativa subsp. japonica OX=39947 GN=OSJNBb0026E...	[more]
Q7X7K3	1.1e-34	47.57	OSJNBb0046P18.1 protein OS=Oryza sativa subsp. japonica OX=39947 GN=OSJNBb0046P1...	[more]

BLAST of CmoCh07G010600 vs. NCBI nr


Match Name	E-value	Identity	Description
CAH68021.1	1.2e-35	48.65	H0807C06-H0308C08.8 [Oryza sativa]	[more]
AAL77140.1	2.8e-35	53.42	Putative pol polyprotein [Oryza sativa Japonica Group] >AAP52245.1 retrotranspos...	[more]
CAE03692.2	8.0e-35	53.42	OSJNBb0026E15.10 [Oryza sativa Japonica Group]	[more]
CAE03285.2	2.3e-34	47.57	OSJNBb0046P18.1 [Oryza sativa Japonica Group]	[more]
ABA94350.1	8.9e-34	54.42	retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa Japonica Gro...	[more]

BLAST of CmoCh07G010600 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 76..174 e-value: 6.3E-11 score: 42.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 213..233
None	No IPR available	PANTHER	PTHR34676:SF11	ZINC FINGER, CCHC-TYPE-RELATED	coord: 58..208
None	No IPR available	PANTHER	PTHR34676	FAMILY NOT NAMED	coord: 58..208

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh07G010600.1	CmoCh07G010600.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding