CmoCh07G010400 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh07G010400
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionUnknown protein
LocationCmo_Chr07: 5269496 .. 5270210 (+)
RNA-Seq ExpressionCmoCh07G010400
SyntenyCmoCh07G010400
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GTTTGAAATGAGCAAGCTTCAAGTTTCCGATCAAAATCAAAGCACTTGAGTTCCGTTGGTCGTTTAAGAAGAAAGAAGAAAAATGCCGAAGTGTGGATGTGGCTCTGCCTGCAACTGCGATCTCAACAACTGCTCGTACGTAGTTTCTTCTTTTTGTGTTCACCAAATTTTCCCGAGAAAGGCGCAGGGGCTTGTTTGTTTCTCGGGAATTTGATTTTCTCGAGAAAATTCTGACTCTGTGTTTGATTTATTTTGTGTGTAGATGCAAACATGATGCCGCTCCCATCATGAAACAGTATGAATTTCCAGCCATCATTCGTGTTTTTAGAAGTTTTTAATATAAGATTTTGATCTTTTATTTGTTCGTTTTATAGATTATATTTGTGTTTTTTGTAAAGCAGGAACTTGTCAGGCGGCTGCAAATGTGGAGCGAATTGCAGTTGCGACCCATGCAACTGCAAATGAAAGGCGTCGGAGTTTTCGATATGAAAAGGCATAAATTAGAGTAAGGGTTGGGTATGGTTCTGTGTGTTTGTGTGTGTAAGGTGTTTGACAAAATGCCGCTTACAAATACTTCAAAGAAATAATGAACCACATATATCTATGTACCTTTGTTTTCTGATGTTATTTCAAATGGGCTGGTTATGACTGCCCAATTTCTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATT

mRNA sequence

GTTTGAAATGAGCAAGCTTCAAGTTTCCGATCAAAATCAAAGCACTTGAGTTCCGTTGGTCGTTTAAGAAGAAAGAAGAAAAATGCCGAAGTGTGGATGTGGCTCTGCCTGCAACTGCGATCTCAACAACTGCTCATGCAAACATGATGCCGCTCCCATCATGAAACAGTATGAATTTCCAGCCATCATTCGTGTTTTTAGAAGAACTTGTCAGGCGGCTGCAAATGTGGAGCGAATTGCAGTTGCGACCCATGCAACTGCAAATGAAAGGCGTCGGAGTTTTCGATATGAAAAGGCATAAATTAGAGTAAGGGTTGGGTATGGTTCTGTGTGTTTGTGTGTGTAAGGTGTTTGACAAAATGCCGCTTACAAATACTTCAAAGAAATAATGAACCACATATATCTATGTACCTTTGTTTTCTGATGTTATTTCAAATGGGCTGGTTATGACTGCCCAATTTCTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATT

Coding sequence (CDS)

ATGCCGAAGTGTGGATGTGGCTCTGCCTGCAACTGCGATCTCAACAACTGCTCATGCAAACATGATGCCGCTCCCATCATGAAACAGTATGAATTTCCAGCCATCATTCGTGTTTTTAGAAGAACTTGTCAGGCGGCTGCAAATGTGGAGCGAATTGCAGTTGCGACCCATGCAACTGCAAATGAAAGGCGTCGGAGTTTTCGATATGAAAAGGCATAA

Protein sequence

MPKCGCGSACNCDLNNCSCKHDAAPIMKQYEFPAIIRVFRRTCQAAANVERIAVATHATANERRRSFRYEKA
Homology
[Close]
BLAST of CmoCh07G010400 vs. ExPASy TrEMBL
Match: A0A6J1HPV6 (uncharacterized protein LOC111466261 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111466261 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 2.5e-09
Identity = 29/29 (100.00%), Postives = 29/29 (100.00%), Query Frame = 0 

Query: 1  MPKCGCGSACNCDLNNCSCKHDAAPIMKQ 30
          MPKCGCGSACNCDLNNCSCKHDAAPIMKQ
Sbjct: 53 MPKCGCGSACNCDLNNCSCKHDAAPIMKQ 81

[Close]
BLAST of CmoCh07G010400 vs. ExPASy TrEMBL
Match: A0A6J1HS62 (uncharacterized protein LOC111466261 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111466261 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 9.6e-09
Identity = 28/28 (100.00%), Postives = 28/28 (100.00%), Query Frame = 0 

Query: 1  MPKCGCGSACNCDLNNCSCKHDAAPIMK 29
          MPKCGCGSACNCDLNNCSCKHDAAPIMK
Sbjct: 53 MPKCGCGSACNCDLNNCSCKHDAAPIMK 80

[Close]
BLAST of CmoCh07G010400 vs. NCBI nr
Match: KAG7027334.1 (hypothetical protein SDJN02_11346 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 88.2 bits (217), Expect = 3.2e-14
Identity = 39/44 (88.64%), Postives = 39/44 (88.64%), Query Frame = 0 

Query: 1  MPKCGCGSACNCDLNNCSCKHDAAPIMKQYEFPAIIRVFRRTCQ 45
          MPKCGCGSACNCDLNNCSCKHDAAPIMKQYEFPAIIR   R  Q
Sbjct: 1  MPKCGCGSACNCDLNNCSCKHDAAPIMKQYEFPAIIRELVRRLQ 44

[Close]
BLAST of CmoCh07G010400 vs. NCBI nr
Match: XP_022966636.1 (uncharacterized protein LOC111466261 isoform X2 [Cucurbita maxima])

HSP 1 Score: 70.9 bits (172), Expect = 5.2e-09
Identity = 29/29 (100.00%), Postives = 29/29 (100.00%), Query Frame = 0 

Query: 1  MPKCGCGSACNCDLNNCSCKHDAAPIMKQ 30
          MPKCGCGSACNCDLNNCSCKHDAAPIMKQ
Sbjct: 53 MPKCGCGSACNCDLNNCSCKHDAAPIMKQ 81

[Close]
BLAST of CmoCh07G010400 vs. NCBI nr
Match: XP_022966635.1 (uncharacterized protein LOC111466261 isoform X1 [Cucurbita maxima])

HSP 1 Score: 68.9 bits (167), Expect = 2.0e-08
Identity = 28/28 (100.00%), Postives = 28/28 (100.00%), Query Frame = 0 

Query: 1  MPKCGCGSACNCDLNNCSCKHDAAPIMK 29
          MPKCGCGSACNCDLNNCSCKHDAAPIMK
Sbjct: 53 MPKCGCGSACNCDLNNCSCKHDAAPIMK 80

The following BLAST results are available for this feature:
BLAST of CmoCh07G010400 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh07G010400 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1HPV62.5e-09100.00uncharacterized protein LOC111466261 isoform X2 OS=Cucurbita maxima OX=3661 GN=L... [more]
A0A6J1HS629.6e-09100.00uncharacterized protein LOC111466261 isoform X1 OS=Cucurbita maxima OX=3661 GN=L... [more]
BLAST of CmoCh07G010400 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7027334.13.2e-1488.64hypothetical protein SDJN02_11346 [Cucurbita argyrosperma subsp. argyrosperma][more]
XP_022966636.15.2e-09100.00uncharacterized protein LOC111466261 isoform X2 [Cucurbita maxima][more]
XP_022966635.12.0e-08100.00uncharacterized protein LOC111466261 isoform X1 [Cucurbita maxima][more]
BLAST of CmoCh07G010400 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh07G010400.1CmoCh07G010400.1mRNA